Nanjie Deng

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and MicrobiologyPhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants”.

Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants

Science Advances(2023)10.1126/sciadv.adg5953

N/A

0.843DataRank · unranked

38 citations

Dario Oliveira Passos, Zelin Shan, Steven J. Smith, Qinfang Sun, Avik Biswas +14 more

Molecular Dynamics Free Energy Simulations Reveal the Mechanism for the Antiviral Resistance of the M66I HIV-1 Capsid Mutation

Viruses(2021)10.3390/v13050920

N/A

0.442DataRank · unranked

18 citations

Ronald M. Levy, Karen A. Kirby, Zhengqiang Wang, Stefan G. Sarafianos, Nanjie Deng +1 more

Thermodynamic Decomposition of Solvation Free Energies with Particle Mesh Ewald and Long-Range Lennard-Jones Interactions in Grid Inhomogeneous Solvation Theory

ChemRxiv(2020)10.26434/chemrxiv.13140011.v2

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0DataRank · unranked

4 citations

Anthony Cruz, Daniel R. Roe, Andrew C. Simmonett, Lauren Wickstrom, Nanjie Deng +2 more

Thermodynamic Decomposition of Solvation Free Energies with Particle Mesh Ewald and Long-Range Lennard-Jones Interactions in Grid Inhomogeneous Solvation Theory

ChemRxiv(2020)10.26434/chemrxiv.13140011.v1

N/A

0DataRank · unranked

1 citations

Anthony Cruz, Daniel R. Roe, Andrew C. Simmonett, Lauren Wickstrom, Nanjie Deng +2 more

Thermodynamic Decomposition of Solvation Free Energies with Particle Mesh Ewald and Long-Range Lennard-Jones Interactions in Grid Inhomogeneous Solvation Theory

Journal of Chemical Theory and Computation(2021)10.1021/acs.jctc.0c01185

N/A

0DataRank · unranked

40 citations

Anthony Cruz, Daniel R. Roe, Andrew C. Simmonett, Lauren Wickstrom, Nanjie Deng +2 more

Evaluating Molecular Docking Software for Small Molecule Binding to G-Quadruplex DNA

International Journal of Molecular Sciences(2021)10.3390/ijms221910801

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0DataRank · unranked

32 citations

Kassandra R. Warnecke, Kai‐Bo Wang, Nanjie Deng, Danzhou Yang, Jonathan Dickerhoff

Application of the alchemical transfer and potential of mean force methods to the SAMPL8 host-guest blinded challenge

Journal of Computer-Aided Molecular Design(2022)10.1007/s10822-021-00437-y

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0DataRank · unranked

14 citations

Joe Z. Wu, Sheenam Khuttan, Tom Kurtzman, Nanjie Deng, Emilio Gallicchio +1 more

Structure-based virtual screening workflow to identify antivirals targeting HIV-1 capsid

Journal of Computer-Aided Molecular Design(2022)10.1007/s10822-022-00446-5

N/A

0DataRank · unranked

8 citations

Avik Biswas, R. S. K. Vijayan, Pierrick Craveur, Stefano Forli, Arthur J. Olson +6 more

Developing end-point methods for absolute binding free energy calculation using the Boltzmann-quasiharmonic model

Physical Chemistry Chemical Physics(2022)10.1039/d1cp05075c

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0DataRank · unranked

7 citations

Emilio Gallicchio, Lieyang Chen, Tom Kurtzman, Nanjie Deng, Lauren Wickstrom

Mechanisms of HIV-1 Integrase Resistance to Dolutegravir and Potent Inhibition of Drug Resistant Variants

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.04.519057

N/A

0DataRank · unranked

3 citations

Dario Oliveira Passos, Zelin Shan, Steven J. Smith, Qinfang Sun, Avik Biswas +12 more

Elucidating the molecular determinants for binding modes of a third-generation HIV-1 integrase strand transfer inhibitor: Importance of side chain and solvent reorganization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.29.569269

N/A

0DataRank · unranked

0 citations

Avik Biswas, Dmitry Lyumkis, Ronald Levy, Nanjie Deng, Qinfang Sun

Elucidating the Molecular Determinants of the Binding Modes of a Third-Generation HIV-1 Integrase Strand Transfer Inhibitor: The Importance of Side Chain and Solvent Reorganization

Viruses(2024)10.3390/v16010076

N/A

0DataRank · unranked

6 citations

Avik Biswas, Dmitry Lyumkis, Ronald Levy, Nanjie Deng, Qinfang Sun

Exploring the Free-Energy Landscape and Thermodynamics of Protein-Protein Association

Biophysical Journal(2020)10.1016/j.bpj.2020.08.005

N/A

0DataRank · unranked

28 citations

Lauren Wickstrom, Mamuka Kvaratskhelia, Emilio Gallicchio, Ronald M. Levy, Nanjie Deng +1 more

Structural basis for nucleolin recognition of MYC promoter G-quadruplex

Science(2025)10.1126/science.adr1752

N/A

0DataRank · unranked

40 citations

Jonathan Dickerhoff, Ke‐wei Zheng, Satchal K. Erramilli, Hanqiao Feng, Guanhui Wu +15 more

Computational design of small molecular modulators of protein–protein interactions with a novel thermodynamic cycle: Allosteric inhibitors of HIV‐1 integrase

Protein Science(2020)10.1002/pro.4004

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0DataRank · unranked

8 citations

Vijayan S. K. Ramaswamy, Ronald M. Levy, Nanjie Deng, Qinfang Sun