Edward M. Marcotte

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.3Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

HumanNet v3: an improved database of human gene networks for disease research

Nucleic Acids Research(2021)10.1093/nar/gkab1048

Top 7%

3.4DataRank

Top 7%138 citations

Seungbyn Baek, Junha Cha, Sunmo Yang, Eiru Kim, Edward M. Marcotte +3 more

Papers

Driven by 54 papers — median percentile 84. Top paper: “HumanNet v3: an improved database of human gene networks for disease research”.

HumanNet v3: an improved database of human gene networks for disease research

Nucleic Acids Research(2021)10.1093/nar/gkab1048

Top 7%

3.4DataRank

Top 7%138 citations

Seungbyn Baek, Junha Cha, Sunmo Yang, Eiru Kim, Edward M. Marcotte +3 more

Abundances of transcripts, proteins, and metabolites in the cell cycle of budding yeast reveal coordinate control of lipid metabolism

Molecular Biology of the Cell(2020)10.1091/mbc.e19-12-0708

Top 16%

1.3DataRank

Top 16%50 citations

Ophelia Papoulas, Nairita Maitra, Riddhiman K. Garge, Brian K. Kennedy, Birgit Schilling +3 more

The emerging landscape of single-molecule protein sequencing technologies

Nature Methods(2021)10.1038/s41592-021-01143-1

N/A

0.886DataRank · unranked

367 citations

Peggy R. Bohländer, Mingjie Dai, Mike Filius, Cecil J. Howard, Xander F. van Kooten +38 more

hu.MAP 2.0: Integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.15.298216

Top 37%

0.526DataRank

Top 37%6 citations

John B. Wallingford, Edward M. Marcotte, Kevin Drew

Improving integrative 3D modeling into low‐ to medium‐resolution electron microscopy structures with evolutionary couplings

Protein Science(2021)10.1002/pro.4067

N/A

0.165DataRank · unranked

2 citations

David W. Taylor, Edward M. Marcotte, Caitlyn L McCafferty

Systematic Profiling of Ale Yeast Protein Dynamics across Fermentation and Repitching

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.21.558736

N/A

0.165DataRank · unranked

2 citations

Renee C. Geck, Joseph O. Armstrong, Barbara Dunn, Daniel R. Boutz, Anna Battenhouse +9 more

Combinatorial phosphorylation on CTD of RNA polymerase II selectively controls transcription and export of protein-coding mRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.13.632769

N/A

0.165DataRank · unranked

2 citations

Seema Irani, Haley A. Hardtke, Renee Stephenson, Brendan M. Floyd, Rosamaria Y. Moreno +4 more

Moving towards sequencing-based metabolomics

Trends in Genetics(2025)10.1016/j.tig.2025.04.006

N/A

0.104DataRank · unranked

1 citations

Andrew D. Ellington, Edward M. Marcotte, Alia Clark‐ElSayed

A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.26.966754

N/A

0DataRank · unranked

4 citations

Chanjae Lee, Rachael M. Cox, Vy Dang, Caitlin C. Devitt, Ophelia Papoulas +4 more

Solid-Phase Peptide Capture and Release for Bulk and Single-Molecule Proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.13.904540

N/A

0DataRank · unranked

1 citations

Brendan M. Floyd, Angela M. Bardo, Jagannath Swaminathan, Edward M. Marcotte, Eric V. Anslyn +1 more

Twinfilin1 controls lamellipodial protrusive activity and actin turnover during vertebrate gastrulation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.03.281659

N/A

0DataRank · unranked

1 citations

Chanjae Lee, Rachael M. Cox, Ophelia Papoulas, José Alvarado, Edward M. Marcotte +2 more

Antifungal benzimidazoles disrupt vasculature by targeting one of nine β-tubulins

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.15.298828

N/A

0DataRank · unranked

1 citations

Hye Young Ji, Chanjae Lee, Jimmy Gollihar, Aashiq H. Kachroo, John B. Wallingford +2 more

Systematic Identification of Protein Phosphorylation-Mediated Interactions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.18.304121

N/A

0DataRank · unranked

0 citations

Kevin Drew, Edward M. Marcotte, Brendan M. Floyd

Photoredox-Catalyzed Decarboxylative C -Terminal Differentiation for Bulk- and Single-Molecule Proteomics

ACS Chemical Biology(2021)10.1021/acschembio.1c00631

N/A

0DataRank · unranked

25 citations

Brendan M. Floyd, Maheshwerreddy Chilamari, James P. Mapes, Jagannath Swaminathan, Steven Bloom +3 more

Co-fractionation/mass spectrometry to identify protein complexes

STAR Protocols(2021)10.1016/j.xpro.2021.100370

N/A

0DataRank · unranked

26 citations

Ophelia Papoulas, Kevin Drew, Vy Dang, Janelle C. Leggere, Wisath Sae-Lee +2 more

Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks

PLoS ONE(2021)10.1371/journal.pone.0262056

N/A

0DataRank · unranked

25 citations

Edward M. Marcotte, Meghana V. Palukuri

Spatiotemporal transcriptional dynamics of the cycling mouse oviduct

Developmental Biology(2021)10.1016/j.ydbio.2021.03.018

N/A

0DataRank · unranked

17 citations

Anna Battenhouse, Riddhiman K. Garge, Ngan Kim Tran, Edward M. Marcotte, John B. Wallingford +1 more

Twinfilin1 controls lamellipodial protrusive activity and actin turnover during vertebrate gastrulation

Journal of Cell Science(2021)10.1242/jcs.254011

N/A

0DataRank · unranked

13 citations

Chanjae Lee, Rachael M. Cox, Ophelia Papoulas, José Alvarado, Shashank Shekhar +3 more

Discovery of new vascular disrupting agents based on evolutionarily conserved drug action, pesticide resistance mutations, and humanized yeast

Genetics(2021)10.1093/genetics/iyab101

N/A

0DataRank · unranked

11 citations

Hye Young Ji, Chanjae Lee, Jimmy Gollihar, Aashiq H. Kachroo, John B Wallingford +2 more

Synthetic repertoires derived from convalescent COVID-19 patients enable discovery of SARS-CoV-2 neutralizing antibodies and a novel quaternary binding modality

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.07.438849

N/A

0DataRank · unranked

15 citations

Ching‐Lin Hsieh, Andrew P. Horton, Elizabeth C. Gardner, Foteini Bartzoka, Nianshuang Wang +35 more

Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.22.449395

N/A

0DataRank · unranked

5 citations

Edward M. Marcotte, Meghana V. Palukuri

The protein organization of a red blood cell

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.10.472004

N/A

0DataRank · unranked

3 citations

Caitlyn L McCafferty, Eric J. Verbeke, Pierre C. Havugimana, Ophelia Papoulas, Claire D. McWhite +8 more

Photoredox-catalyzed decarboxylative C -terminal differentiation for bulk and single molecule proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.08.451692

N/A

0DataRank · unranked

2 citations

Brendan M. Floyd, Maheshwerreddy Chilamari, James P. Mapes, Jagannath Swaminathan, Steven Bloom +3 more

Spatiotemporal transcriptional dynamics of the cycling mouse oviduct

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.15.426867

N/A

0DataRank · unranked

1 citations

Anna Battenhouse, Riddhiman K. Garge, Ngan Kim Tran, Edward M. Marcotte, John B. Wallingford +1 more

The protein organization of a red blood cell

Cell Reports(2022)10.1016/j.celrep.2022.111103

N/A

0DataRank · unranked

82 citations

Caitlyn L McCafferty, Eric J. Verbeke, Pierre C. Havugimana, Ophelia Papoulas, Claire D. McWhite +8 more

Protein Sequencing, One Molecule at a Time

Annual Review of Biophysics(2022)10.1146/annurev-biophys-102121-103615

N/A

0DataRank · unranked

45 citations

Edward M. Marcotte, Brendan M. Floyd

Functional expression of opioid receptors and other human GPCRs in yeast engineered to produce human sterols

Nature Communications(2022)10.1038/s41467-022-30570-7

N/A

0DataRank · unranked

25 citations

Colleen J. Mulvihill, Riddhiman K. Garge, Daniel R. Boutz, Olivier Rousseau, Brendan M. Floyd +8 more

Alternative proteoforms and proteoform-dependent assemblies in humans and plants

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.21.508930

N/A

0DataRank · unranked

3 citations

Wisath Sae-Lee, Yaning Yuan, Anna L. Mallam, Nicolas A. Gort-Freitas, Silvia Ramundo +3 more

Rapid, scalable, combinatorial genome engineering by Marker-less Enrichment and Recombination of Genetically Engineered loci (MERGE)

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.17.496490

N/A

0DataRank · unranked

1 citations

Brittany M. Greco, Jon M. Laurent, Michelle Vandeloo, Edward M. Marcotte, Aashiq H. Kachroo +1 more

Humanized CB1R and CB2R yeast biosensors enable facile screening of cannabinoid compounds

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.12.511978

N/A

0DataRank · unranked

1 citations

Josh Lutgens, Jimmy Gollihar, Petra Bachanová, Edward M. Marcotte, Andrew D. Ellington +2 more

Native doublet microtubules from Tetrahymena thermophila reveal the importance of outer junction proteins

Nature Communications(2023)10.1038/s41467-023-37868-0

N/A

0DataRank · unranked

120 citations

Corbin Black, Ewa Joachimiak, Shun Kai Yang, Thibault Legal, Katya Peri +11 more

Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism

Nature Communications(2023)10.1038/s41467-023-41480-7

N/A

0DataRank · unranked

40 citations

Sumita Majhi, Caitlyn L McCafferty, Babak Nami, Corbin Black, Shun Kai Yang +8 more

Distinctive interactomes of RNA polymerase II phosphorylation during different stages of transcription

iScience(2023)10.1016/j.isci.2023.107581

N/A

0DataRank · unranked

13 citations

Kyle J. Juetten, Svetlana Panina, Jamie P. Butalewicz, Brendan M. Floyd, Mukesh Kumar Venkat Ramani +4 more

Systematic profiling of ale yeast protein dynamics across fermentation and repitching

G3 Genes Genomes Genetics(2023)10.1093/g3journal/jkad293

N/A

0DataRank · unranked

6 citations

Renee C. Geck, Joseph O. Armstrong, Barbara Dunn, Daniel R. Boutz, Anna Battenhouse +9 more

SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode

Communications Biology(2023)10.1038/s42003-023-05649-6

N/A

0DataRank · unranked

8 citations

Ching‐Lin Hsieh, Andrew P. Horton, Elizabeth C. Gardner, Ling Zhou, Foteini Bartzoka +25 more

Rapid, scalable, combinatorial genome engineering by marker-less enrichment and recombination of genetically engineered loci in yeast

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100464

N/A

0DataRank · unranked

5 citations

Brittany M. Greco, Jon M. Laurent, Riddhiman K. Garge, Daniel R. Boutz, Michelle Vandeloo +3 more

Protein nonadditive expression and solubility contribute to heterosis in Arabidopsis hybrids and allotetraploids

Frontiers in Plant Science(2023)10.3389/fpls.2023.1252564

N/A

0DataRank · unranked

2 citations

Dongqing Xu, Ophelia Papoulas, Daniel R. Boutz, Edward M. Marcotte, Z. Jeffrey Chen +1 more

Robust and scalable single-molecule protein sequencing with fluorosequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.15.558007

N/A

0DataRank · unranked

7 citations

Julia Stover, Heather D. Stout, Tucker M. Folsom, Emily Babcock, Sandra Loudwig +17 more

Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.31.543107

N/A

0DataRank · unranked

3 citations

Sumita Majhi, Caitie L. McCaffrey, Babak Nami, Corbin Black, Shun Kai Yang +8 more

Protein nonadditive expression and solubility in Arabidopsis hybrids and allotetraploids

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.01.530688

N/A

0DataRank · unranked

0 citations

Dongqing Xu, Ophelia Papoulas, Daniel R. Boutz, Edward M. Marcotte, Z. Jeffrey Chen +1 more

Label-free proteomic comparison reveals ciliary and non-ciliary phenotypes of IFT-A mutants

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.08.531778

N/A

0DataRank · unranked

0 citations

Jaime V.K. Hibbard, Ophelia Papoulas, Chanjae Lee, Chad G. Pearson, Edward M. Marcotte +2 more

Mining patents with large language models elucidates the chemical function landscape

Digital Discovery(2024)10.1039/d4dd00011k

N/A

0DataRank · unranked

12 citations

Claus O. Wilke, Edward M. Marcotte, Andrew D. Ellington, Clayton W. Kosonocky

Alternative proteoforms and proteoform-dependent assemblies in humans and plants

Molecular Systems Biology(2024)10.1038/s44320-024-00048-3

N/A

0DataRank · unranked

8 citations

Wisath Sae-Lee, Yaning Yuan, Anna L. Mallam, Nicolas A. Gort-Freitas, Silvia Ramundo +3 more

Label-free proteomic comparison reveals ciliary and nonciliary phenotypes of IFT-A mutants

Molecular Biology of the Cell(2024)10.1091/mbc.e23-03-0084

N/A

0DataRank · unranked

3 citations

Jaime V.K. Hibbard, Ophelia Papoulas, Chanjae Lee, Chad G. Pearson, Edward M. Marcotte +2 more

Systematic mapping of TF-mediated cell fate changes by a pooled induction coupled with scRNA-seq and multi-omics approaches

Genome Research(2024)10.1101/gr.277926.123

N/A

0DataRank · unranked

4 citations

Qingqing Guo, Mijeong Kim, Joon Hyuk Choi, Alia Segura, Alper Genceroglu +8 more

A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies

Cell(2020)10.1016/j.cell.2020.02.049

N/A

0DataRank · unranked

245 citations

Ophelia Papoulas, Kevin Drew, Rachael M. Cox, Viviana June, Oliver Xiaoou Dong +9 more

Serendipity and the Slime Mold: A Visual Survey of High-Molecular-Weight Protein Assemblies Reveals the Structure of the Polyketide Synthase Pks16

Molecular & Cellular Proteomics(2025)10.1016/j.mcpro.2025.101484

N/A

0DataRank · unranked

0 citations

Adrian T. Keatinge‐Clay, Edward M. Marcotte, Gabriel Hoogerbrugge

Functional partitioning of a liquid-like organelle during assembly of axonemal dyneins

eLife(2020)10.7554/elife.58662

N/A

0DataRank · unranked

56 citations

Rachael M. Cox, Ophelia Papoulas, Amjad Horani, Kevin Drew, Caitlin C. Devitt +4 more

Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs

PLoS Biology(2020)10.1371/journal.pbio.3000627

N/A

0DataRank · unranked

65 citations

Riddhiman K. Garge, A Teufel, Claus O. Wilke, Aashiq H. Kachroo, Edward M. Marcotte +1 more

Solid-Phase Peptide Capture and Release for Bulk and Single-Molecule Proteomics

ACS Chemical Biology(2020)10.1021/acschembio.0c00040

N/A

0DataRank · unranked

20 citations

Brendan M. Floyd, Angela M. Bardo, Jagannath Swaminathan, Edward M. Marcotte, Eric V. Anslyn +1 more

Structural Biology in the Multi-Omics Era

Journal of Chemical Information and Modeling(2020)10.1021/acs.jcim.9b01164

N/A

0DataRank · unranked

17 citations

Eric J. Verbeke, Edward M. Marcotte, David W. Taylor, Caitlyn L McCafferty

Systematic Humanization of the Yeast Cytoskeleton Discerns Functionally Replaceable from Divergent Human Genes

Genetics(2020)10.1534/genetics.120.303378

N/A

0DataRank · unranked

22 citations

Jon M. Laurent, Aashiq H. Kachroo, Edward M. Marcotte, Riddhiman K. Garge

Next-Generation TLC: A Quantitative Platform for Parallel Spotting and Imaging

The Journal of Organic Chemistry(2020)10.1021/acs.joc.0c00349

N/A

0DataRank · unranked

16 citations

Sarah R. Moor, Hyun Hwa Jo, Pedro Metola, Leo A. Joyce, Edward M. Marcotte +3 more

Functional partitioning of a liquid-like organelle during assembly of axonemal dyneins

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.21.052837

N/A

0DataRank · unranked

6 citations

Rachael M. Cox, Ophelia Papoulas, Amjad Horani, Kevin Drew, Caitlin C. Devitt +4 more

Edward M. Marcotte

Indexed papers

Top data-sharing exemplar

Papers