🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Yara Seif

University of California San Diego

ORCID: 0000-0001-8813-5679

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 13 papers. Top paper: “Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media”.

Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media

GigaScience(2021)10.1093/gigascience/giaa156

N/A

0.548DataRank · unranked

15 citations

Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson +14 more

Revealing 29 sets of independently modulated genes in Staphylococcus aureus , their regulators and role in key physiological responses

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.18.997296

N/A

0.330DataRank · unranked

8 citations

Hannah Tsunemoto, Yara Seif, Anand V. Sastry, Richard Szubin, Sibei Xu +7 more

Profiling the effect of nafcillin on HA-MRSA D592 using bacteriological and physiological media

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.30.070904

N/A

0DataRank · unranked

3 citations

Saugat Poudel, Hannah Tsunemoto, Richard Szubin, Michael J. Meehan, Connor A. Olson +15 more

Characterizing the response of Acinetobacter baumannii ATCC 17978 to azithromycin in multiple in vitro growth conditions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.19.079962

N/A

0DataRank · unranked

2 citations

Yara Seif, Hannah Tsunemoto, Saugat Poudel, Michael J. Meehan, Richard Szubin +15 more

Pangenome analytics reveal two-component systems as conserved targets in ESKAPEE pathogens

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.25.061994

N/A

0DataRank · unranked

0 citations

Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M. Monk +2 more

Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.06.079640

N/A

0DataRank · unranked

0 citations

Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson +14 more

Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens

mSystems(2021)10.1128/msystems.00981-20

N/A

0DataRank · unranked

45 citations

Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M. Monk +2 more

Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus

Communications Biology(2021)10.1038/s42003-021-02339-z

N/A

0DataRank · unranked

39 citations

Yara Seif, George Sakoulas, Connor A. Olson, Ying Hefner, Amitesh Anand +6 more

Path to improving the life cycle and quality of genome-scale models of metabolism

Cell Systems(2021)10.1016/j.cels.2021.06.005

N/A

0DataRank · unranked

31 citations

Bernhard Ø. Palsson, Yara Seif

Elucidating the CodY regulon in Staphylococcus aureus USA300 substrains

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.08.426013

N/A

0DataRank · unranked

4 citations

Saugat Poudel, Yara Seif, Zeyang Shen, Bernhard Ø. Palsson, Ye Gao

Metabolic and genetic basis for auxotrophies in Gram-negative species

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1910499117

N/A

0DataRank · unranked

65 citations

Kumari Sonal Choudhary, Ying Hefner, Amitesh Anand, Laurence Yang, Bernhard Ø. Palsson +1 more

Elucidating the CodY regulon in Staphylococcus aureus USA300 substrains TCH1516 and LAC

mSystems(2023)10.1128/msystems.00279-23

N/A

0DataRank · unranked

14 citations

Saugat Poudel, Yara Seif, Zeyang Shen, Bernhard Ø. Palsson, Ye Gao

Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.07.138933

N/A

0DataRank · unranked

5 citations

Yara Seif, George Sakoulas, Connor A. Olson, Richard Szubin, Bernhard Ø. Palsson +3 more