Ali Shojaie

Also affiliated with Cancer Research And Biostatistics

MathematicsBiochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Derivation and external validation of community-acquired pneumonia subphenotypes in Southeast Asia: a secondary analysis of prospective cohort studies

EClinicalMedicine(2025)10.1016/j.eclinm.2025.103572

Top 100%

0DataRank

Top 100%0 citations

Prapassorn Poolchanuan, Jesse Ross, Lu Xia, Leila R. Zelnick, Viriya Hantrakun +15 more

Papers

Driven by 49 papers — median percentile 0. Top paper: “Identification of circulating proteins associated with general cognitive function among middle-aged and older adults”.

Identification of circulating proteins associated with general cognitive function among middle-aged and older adults

Communications Biology(2023)10.1038/s42003-023-05454-1

N/A

0.689DataRank · unranked

22 citations

Alison E. Fohner, Qiong Yang, Jennifer A. Brody, Gail Davies, Jie Yao +52 more

Plasma lipidomic profiles after a low and high glycemic load dietary pattern in a randomized controlled crossover feeding study

Metabolomics(2020)10.1007/s11306-020-01746-3

N/A

0.527DataRank · unranked

13 citations

Sandi L. Navarro, Ali Shojaie, Timothy W. Randolph, Lisa Bettcher, Cynthia Le +7 more

The functional impact of rare variation across the regulatory cascade

Cell Genomics(2023)10.1016/j.xgen.2023.100401

N/A

0.526DataRank · unranked

15 citations

Nicole M. Ferraro, Benjamin J. Strober, François Aguet, Silva Kasela, Marios Arvanitis +33 more

Network structure mediates functional reorganization induced by optogenetic stimulation of non-human primate sensorimotor cortex

iScience(2022)10.1016/j.isci.2022.104285

N/A

0.523DataRank · unranked

17 citations

Alexander Greaves-Tunnell, Eric Shea-Brown, Zaïd Harchaoui, Ali Shojaie, Azadeh Yazdan-Shahmorad +1 more

Proteomics and Population Biology in the Cardiovascular Health Study (CHS): design of a study with mentored access and active data sharing

European Journal of Epidemiology(2022)10.1007/s10654-022-00888-z

N/A

0.505DataRank · unranked

28 citations

Caitlin McHugh, Jennifer A. Brody, Joshua C. Bis, Colleen M. Sitlani, Traci M. Bartz +33 more

Determinants of mosaic chromosomal alteration fitness

Nature Communications(2024)10.1038/s41467-024-48190-8

N/A

0.345DataRank · unranked

9 citations

Taralynn Mack, Hannah Poisner, Yasminka A. Jakubek, Adrienne M. Stilp, Braxton D. Mitchell +39 more

The Dietary Biomarkers Development Consortium: An Initiative for Discovery and Validation of Dietary Biomarkers for Precision Nutrition

Current Developments in Nutrition(2025)10.1016/j.cdnut.2025.107435

N/A

0.312DataRank · unranked

5 citations

Qi Sun, Shilpa N Bhupathiraju, Jeannette M. Schenk, Darya O. Mishchuk, James R. Bain +29 more

Statistical Significance in High-dimensional Linear Mixed Models

PubMed(2020)10.1145/3412815.3416883

N/A

0.274DataRank · unranked

3 citations

Mathias Drton, Ali Shojaie, Lina Lin

Causal Structural Learning via Local Graphs

SIAM Journal on Mathematics of Data Science(2023)10.1137/20m1362796

N/A

0.241DataRank · unranked

4 citations

Mathias Drton, Ali Shojaie, Wenyu Chen

Dysregulated immunologic landscape of the early host response in melioidosis

JCI Insight(2024)10.1172/jci.insight.179106

N/A

0.208DataRank · unranked

3 citations

Lu Xia, Barbara Kronsteiner, Thatcha Yimthin, Rungnapa Phunpang, Adul Dulsuk +14 more

Deep Learning Prediction of Left Atrial Structure and Function from 12-lead Electrocardiograms

medRxiv(2025)10.1101/2025.09.29.25336490

N/A

0.197DataRank · unranked

2 citations

Vidhushei Yogeswaran, Kerri L. Wiggins, Colleen M. Sitlani, Joshua C Bis, Lin Y. Chen +10 more

GAD65Abs Are Not Associated With Beta-Cell Dysfunction in Patients With T2D in the GRADE Study

Journal of the Endocrine Society(2024)10.1210/jendso/bvad179

N/A

0.165DataRank · unranked

2 citations

Ali Shojaie, Barbara Brooks‐Worrell, Sepideh Dibay, Kristina M. Utzschneider, Steven E. Kahn +12 more

Metabolic plasticity of the gut microbiome in response to diets differing in glycemic load in a randomized, crossover, controlled feeding study

American Journal of Clinical Nutrition(2025)10.1016/j.ajcnut.2025.06.026

N/A

0.165DataRank · unranked

2 citations

Orsalem J. Kahsai, Keith R. Curtis, Sandi L. Navarro, Yuzheng Zhang, Timothy W. Randolph +8 more

Determinants of mosaic chromosomal alteration fitness

medRxiv(2023)10.1101/2023.10.20.23297280

N/A

0.104DataRank · unranked

1 citations

Taralynn Mack, Hannah Poisner, Yasminka A. Jakubek, Adrienne M. Stilp, Braxton D. Mitchell +39 more

Prioritization of causal genes from genome-wide association studies by Bayesian data integration across loci

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012725

N/A

0.104DataRank · unranked

1 citations

Marios Arvanitis, ThuyVy Duong, Jennifer A. Brody, Alexis Battle, Nona Sotoodehnia +4 more

Principal Component Analysis Balancing Prediction and Approximation Accuracy for Spatial Data

Journal of Computational and Graphical Statistics(2025)10.1080/10618600.2025.2518185

N/A

0.104DataRank · unranked

1 citations

Magali N. Blanco, Timothy V. Larson, Lianne Sheppard, Adam A. Szpiro, Ali Shojaie +1 more

Plasma Metabolomics Reveals Distinct Biological and Diagnostic Signatures for Melioidosis

American Journal of Respiratory and Critical Care Medicine(2023)10.1164/rccm.202207-1349oc

N/A

0DataRank · unranked

10 citations

Viriya Hantrakun, Prapit Teparrukkul, Gumphol Wongsuvan, Taniya Kaewarpai, Adul Dulsuk +8 more

Generalized matrix decomposition regression: Estimation and inference for two-way structured data

The Annals of Applied Statistics(2023)10.1214/23-aoas1746

N/A

0DataRank · unranked

2 citations

Ali Shojaie, Timothy W. Randolph, Parker Knight, Jing Ma, Yue Wang

Proteomic Signatures of Right Ventricular Outcomes in Pulmonary Arterial Hypertension

Circulation Heart Failure(2024)10.1161/circheartfailure.124.012067

N/A

0DataRank · unranked

7 citations

Lu Xia, Olivier Boucherat, Karthik Suresh, Anna R. Hemnes, Sébastien Bonnet +7 more

Iterative Data-adaptive Autoregressive (IDAR) whitening procedure for long and short TR fMRI

Frontiers in Neuroscience(2024)10.3389/fnins.2024.1381722

N/A

0DataRank · unranked

4 citations

Jason Webster, Thomas J. Grabowski, Ali Shojaie, Hesamoddin Jahanian, Kun Yue

Statistical inference on qualitative differences in the magnitude of an effect

Statistics in Medicine(2024)10.1002/sim.10025

N/A

0DataRank · unranked

1 citations

Ali Shojaie, Aaron Hudson

Learning Directed Acyclic Graphs from Partial Orderings

arXiv (Cornell University)(2024)10.48550/arxiv.2403.16031

N/A

0DataRank · unranked

1 citations

Wenyu Chen, Ali Shojaie

Integer Programming for Learning Directed Acyclic Graphs from Non-identifiable Gaussian Models

arXiv (Cornell University)(2024)10.48550/arxiv.2404.12592

N/A

0DataRank · unranked

0 citations

Armeen Taeb, Si̇mge Küçükyavuz, Ali Shojaie, Tong Xu

Determinants of mosaic chromosomal alteration fitness

UNC Libraries(2024)10.17615/yx5k-ka41

N/A

0DataRank · unranked

0 citations

Taralynn Mack, Margaret F. Doyle, Yash Pershad, Paul L. Auer, Jeong H. Yun +39 more

An Asymptotically Optimal Coordinate Descent Algorithm for Learning Bayesian Networks from Gaussian Models

arXiv (Cornell University)(2024)10.48550/arxiv.2408.11977

N/A

0DataRank · unranked

0 citations

Si̇mge Küçükyavuz, Ali Shojaie, Armeen Taeb, Tong Xu

Spectral Differential Network Analysis for High-Dimensional Time Series

arXiv (Cornell University)(2024)10.48550/arxiv.2412.07905

N/A

0DataRank · unranked

0 citations

B. -S. Kim, Zaïd Harchaoui, Ali Shojaie, Michael Hellstern

GREGoR: accelerating genomics for rare diseases

Nature(2025)10.1038/s41586-025-09613-8

N/A

0DataRank · unranked

15 citations

Ben Heavner, Marsha M. Wheeler, Rachel A. Ungar, Jonathan LoTempio, Laurens Wiel +94 more

Age alters integrated cerebrovascular and cardiovascular dynamic responses to exercise: insights from a systems modeling approach

Journal of Applied Physiology(2025)10.1152/japplphysiol.00393.2025

N/A

0DataRank · unranked

1 citations

Eric D. Vidoni, Keshav Motwani, Bria L. Bartsch, Tyler Baldridge, Madeline Walker +2 more

Transcriptome-wide association studies at cell state level using single-cell eQTL data

medRxiv(2025)10.1101/2025.03.17.25324128

N/A

0DataRank · unranked

1 citations

Eardi Lila, Zhicheng Ji, Ali Shojaie, Alexis Battle, Wei Sun +1 more

Unraveling Alzheimer’s disease: Investigating dynamic functional connectivity in the default mode network through DCC-GARCH modeling

Aperture Neuro(2025)10.52294/001c.141445

N/A

0DataRank · unranked

1 citations

Jason Webster, Thomas J. Grabowski, Hesamoddin Jahanian, Ali Shojaie, Kun Yue

Integer programming for learning directed acyclic graphs from nonidentifiable Gaussian models

Biometrika(2025)10.1093/biomet/asaf032

N/A

0DataRank · unranked

0 citations

Armeen Taeb, Si̇mge Küçükyavuz, Ali Shojaie, Tong Xu

Derivation and external validation of community-acquired pneumonia subphenotypes in Southeast Asia: a secondary analysis of prospective cohort studies

EClinicalMedicine(2025)10.1016/j.eclinm.2025.103572

Top 100%

0DataRank

Top 100%0 citations

Prapassorn Poolchanuan, Jesse Ross, Lu Xia, Leila R. Zelnick, Viriya Hantrakun +15 more

Genetic and metabolomic architecture of variation in diet restriction-mediated lifespan extension in Drosophila

PLoS Genetics(2020)10.1371/journal.pgen.1008835

N/A

0DataRank · unranked

74 citations

Kenneth A. Wilson, Jennifer Beck, Christopher S. Nelson, George Brownridge, Benjamin R. Harrison +9 more

CausalGRN: deciphering causal gene regulatory networks from single-cell CRISPR screens

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.30.692369

N/A

0DataRank · unranked

0 citations

Dingyu Liu, Guanghao Qi, Danwei Huangfu, L. Hsu, Ali Shojaie +2 more

Generalized score matching for general domains

Information and Inference A Journal of the IMA(2020)10.1093/imaiai/iaaa041

N/A

0DataRank · unranked

11 citations

Mathias Drton, Ali Shojaie, Shiqing Yu

Consistent Second-Order Conic Integer Programming for Learning Bayesian Networks

PubMed(2020)10.48550/arxiv.2005.14346

N/A

0DataRank · unranked

6 citations

Ali Shojaie, Hasan Manzour, Linchuan Wei, Hao-Hsiang Wu, Si̇mge Küçükyavuz

Integer Programming for Learning Directed Acyclic Graphs from Continuous Data

INFORMS Journal on Optimization(2020)10.1287/ijoo.2019.0040

N/A

0DataRank · unranked

2 citations

Si̇mge Küçükyavuz, Hao-Hsiang Wu, Ali Shojaie, Hasan Manzour

Directed Graphical Models and Causal Discovery for Zero-Inflated Data

PubMed(2020)10.48550/arxiv.2004.04150

N/A

0DataRank · unranked

1 citations

Mathias Drton, Ali Shojaie, Shiqing Yu

Discussion of “A Tuning-Free Robust and Efficient Approach to High-Dimensional Regression”

Journal of the American Statistical Association(2020)10.1080/01621459.2020.1837139

N/A

0DataRank · unranked

0 citations

Ali Shojaie, Xiudi Li

netgsa: Fast computation and interactive visualization for topology-based pathway enrichment analysis

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008979

N/A

0DataRank · unranked

12 citations

Jing Ma, Kun Yue, Ali Shojaie, Michael Hellstern

The Convex Mixture Distribution: Granger Causality for Categorical Time Series

SIAM Journal on Mathematics of Data Science(2021)10.1137/20m133097x

N/A

0DataRank · unranked

10 citations

Xiudi Li, Emily B. Fox, Ali Shojaie, Alex Tank

Granger Causality: A Review and Recent Advances

Annual Review of Statistics and Its Application(2021)10.1146/annurev-statistics-040120-010930

N/A

0DataRank · unranked

8 citations

Emily B. Fox, Ali Shojaie

REHE: Fast variance components estimation for linear mixed models

Genetic Epidemiology(2021)10.1002/gepi.22432

N/A

0DataRank · unranked

3 citations

Jing Ma, Timothy A. Thornton, Ali Shojaie, Kun Yue

Urinary enterolactone is associated with plasma proteins related to immunity and cancer development in healthy participants on controlled diets

Human Nutrition & Metabolism(2021)10.1016/j.hnm.2021.200128

N/A

0DataRank · unranked

5 citations

Sandi L. Navarro, Carly B. Garrison, Timothy W. Randolph, Yuzheng Zhang, Ali Shojaie +7 more

Cortical network structure mediates response to stimulation: an optogenetic study in non-human primates

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.17.444526

N/A

0DataRank · unranked

3 citations

Alexander Greaves-Tunnell, Eric Shea-Brown, Zaïd Harchaoui, Ali Shojaie, Azadeh Yazdan-Shahmorad +1 more

Covariate-Adjusted Inference for Differential Analysis of High-Dimensional Networks

Sankhya A(2021)10.1007/s13171-021-00252-5

N/A

0DataRank · unranked

0 citations

Ali Shojaie, Aaron Hudson

Alteration of oral microbiome composition in children living with pesticide-exposed farm workers

International Journal of Hygiene and Environmental Health(2022)10.1016/j.ijheh.2022.114090

N/A

0DataRank · unranked

5 citations

James C. Wallace, Sungwoo Hong, Carly S. Wilder, Foad H. Green, Jesse Tsai +9 more

Penalized estimation of threshold auto-regressive models with many components and thresholds

Electronic Journal of Statistics(2022)10.1214/22-ejs1982

N/A

0DataRank · unranked

4 citations

Abolfazl Safikhani, Alex Tank, Ali Shojaie, Kunhui Zhang

Metabolomic Signatures Associated With Pulmonary Arterial Hypertension Outcomes

Circulation Research(2023)10.1161/circresaha.122.321923

N/A

0DataRank · unranked

57 citations

Lu Xia, David Ralph, Samuel G. Rayner, Ali Shojaie, Peter J. Leary +2 more

Ali Shojaie

Indexed papers

Top data-sharing exemplar

Papers