Kenneth S. Zaret

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 29 papers. Top paper: “Carm1-arginine methylation of the transcription factor C/EBPα regulates transdifferentiation velocity”.

Carm1-arginine methylation of the transcription factor C/EBPα regulates transdifferentiation velocity

eLife(2023)10.7554/elife.83951

N/A

0.329DataRank · unranked

7 citations

Elisabeth Kowenz‐Leutz, Tian V. Tian, Antonios Klonizakis, Jonathan Lerner, Luísa de Andrés-Aguayo +12 more

Pioneer Transcription Factors Initiating Gene Network Changes

Annual Review of Genetics(2020)10.1146/annurev-genet-030220-015007

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0DataRank · unranked

436 citations

Kenneth S. Zaret

Two-Parameter Mobility Assessments Discriminate Diverse Regulatory Factor Behaviors in Chromatin

Molecular Cell(2020)10.1016/j.molcel.2020.05.036

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0DataRank · unranked

129 citations

Pablo Aurelio Gómez-García, Ryan L. McCarthy, Zhe Liu, Melike Lakadamyali, Kenneth S. Zaret +1 more

Gene network transitions in embryos depend upon interactions between a pioneer transcription factor and core histones

Nature Genetics(2020)10.1038/s41588-020-0591-8

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0DataRank · unranked

89 citations

Isabel Cuesta, Greg Donahue, Naomi Takenaka, Anna B. Osipovich, Mark A. Magnuson +5 more

Two-parameter single-molecule analysis for measurement of chromatin mobility

STAR Protocols(2020)10.1016/j.xpro.2020.100223

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0DataRank · unranked

11 citations

Pablo Aurelio Gómez-García, Ryan L. McCarthy, Zhe Liu, Melike Lakadamyali, Kenneth S. Zaret +1 more

THBS2/CA19-9 Detecting Pancreatic Ductal Adenocarcinoma at Diagnosis Underperforms in Prediagnostic Detection: Implications for Biomarker Advancement

Cancer Prevention Research(2020)10.1158/1940-6207.capr-20-0403

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0DataRank · unranked

24 citations

Naomi Takenaka, William R. Bamlet, Ann L. Oberg, Stephanie S. Yee, Erica L. Carpenter +5 more

Diverse heterochromatin-associated proteins repress distinct classes of genes and repetitive elements

Nature Cell Biology(2021)10.1038/s41556-021-00725-7

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0DataRank · unranked

76 citations

Kelsey E. Kaeding, Samuel H. Keller, Yu Zhong, Liqin Xu, Antony Hsieh +7 more

FoxA-dependent demethylation of DNA initiates epigenetic memory of cellular identity

Developmental Cell(2021)10.1016/j.devcel.2021.02.005

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0DataRank · unranked

58 citations

Ashleigh Morgan, Long Gao, Jonathan Schug, Sarmistha Mukherjee, Meilín Fernández García +5 more

EU-RNA-seq for in vivo labeling and high throughput sequencing of nascent transcripts

STAR Protocols(2021)10.1016/j.xpro.2021.100651

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0DataRank · unranked

28 citations

Greg Donahue, Kenneth S. Zaret, Katherine C. Palozola

Longitudinal Analysis of Human Pancreatic Adenocarcinoma Development Reveals Transient Gene Expression Signatures

Molecular Cancer Research(2021)10.1158/1541-7786.mcr-21-0483

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0DataRank · unranked

12 citations

Taelor Ekstrom, Wenli Yang, Greg Donahue, Dmytro Grygoryev, Thuy T. M. Ngo +4 more

THSB2 as a prognostic biomarker for patients diagnosed with metastatic pancreatic ductal adenocarcinoma

Oncotarget(2021)10.18632/oncotarget.28099

N/A

0DataRank · unranked

5 citations

Jacob E. Till, Shirsa Udgata, Naomi Takenaka, Stephanie S. Yee, Michael J. LaRiviere +8 more

Author Correction: Diverse heterochromatin-associated proteins repress distinct classes of genes and repetitive elements

Nature Cell Biology(2021)10.1038/s41556-021-00759-x

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0DataRank · unranked

2 citations

Kelsey E. Kaeding, Samuel H. Keller, Yu Zhong, Liqin Xu, Antony Hsieh +7 more

A pioneer factor locally opens compacted chromatin to enable targeted ATP-dependent nucleosome remodeling

Nature Structural & Molecular Biology(2022)10.1038/s41594-022-00886-5

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0DataRank · unranked

75 citations

Kaylyn E. Williamson, Meilín Fernández García, Max Ferretti, Ryan L. McCarthy, Greg Donahue +6 more

Structures and consequences of pioneer factor binding to nucleosomes

Current Opinion in Structural Biology(2022)10.1016/j.sbi.2022.102425

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0DataRank · unranked

45 citations

Kenneth S. Zaret, Edgar Luzete-Monteiro

Carm1 regulates the speed of C/EBPα-induced transdifferentiation by a cofactor stealing mechanism

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.03.510647

N/A

0DataRank · unranked

0 citations

Elisabeth Kowenz‐Leutz, Tian V. Tian, Antonios Klonizakis, Jonathan Lerner, Luísa de Andrés-Aguayo +10 more

Pioneer factors: roles and their regulation in development

Trends in Genetics(2023)10.1016/j.tig.2023.10.007

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0DataRank · unranked

125 citations

Kenneth S. Zaret, Amandine Barral

Chromatin expansion microscopy reveals nanoscale organization of transcription and chromatin

Science(2023)10.1126/science.ade5308

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0DataRank · unranked

106 citations

Liyun Miao, Charles E. Vejnar, Ons M’Saad, Alice Sherrard, Megan A. Frederick +6 more

Pioneer factors — key regulators of chromatin and gene expression

Nature Reviews Genetics(2023)10.1038/s41576-023-00648-z

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0DataRank · unranked

55 citations

Jacques Drouin, Melissa M. Harrison, Jussi Taipale, Kenneth S. Zaret, Martha L. Bulyk

Diverse heterochromatin states restricting cell identity and reprogramming

Trends in Biochemical Sciences(2023)10.1016/j.tibs.2023.02.007

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0DataRank · unranked

46 citations

Jingchao Zhang, Kenneth S. Zaret, Ryan L. McCarthy

Different chromatin-scanning modes lead to targeting of compacted chromatin by pioneer factors FOXA1 and SOX2

Cell Reports(2023)10.1016/j.celrep.2023.112748

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0DataRank · unranked

36 citations

Andrew Katznelson, Jingchao Zhang, Kenneth S. Zaret, Jonathan Lerner

Physiological reprogramming in vivo mediated by Sox4 pioneer factor activity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.14.528556

N/A

0DataRank · unranked

2 citations

Jonathan Sussman, Kenji Ito, Andrew Katznelson, Salina Yuan, Jinyang Li +9 more

TXNRD1 drives the innate immune response in senescent cells with implications for age-associated inflammation

Nature Aging(2024)10.1038/s43587-023-00564-1

N/A

0DataRank · unranked

34 citations

Bo Zhao, Martina Towers, Liping Liao, Edgar Luzete Monteiro, Xin Xu +13 more

Cellular reprogramming in vivo initiated by SOX4 pioneer factor activity

Nature Communications(2024)10.1038/s41467-024-45939-z

N/A

0DataRank · unranked

32 citations

Jonathan Sussman, Kenji Ito, Andrew Katznelson, Salina Yuan, Naomi Takenaka +9 more

Distinct H3K9me3 heterochromatin maintenance dynamics govern different gene programmes and repeats in pluripotent cells

Nature Cell Biology(2024)10.1038/s41556-024-01547-z

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0DataRank · unranked

19 citations

Greg Donahue, Michael Gilbert, Tomer Lapidot, Dario Nicetto, Kenneth S. Zaret +1 more

Structural insights into the cooperative nucleosome recognition and chromatin opening by FOXA1 and GATA4

Molecular Cell(2024)10.1016/j.molcel.2024.07.016

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0DataRank · unranked

14 citations

Hanqiao Feng, Furong Huang, Iris Zhu, Stephanie Portillo‐Ledesma, Dan Shi +6 more

The yin and yang of pioneer transcription factors: Dual roles in repression and activation

BioEssays(2024)10.1002/bies.202400138

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0DataRank · unranked

12 citations

Jonathan H. Sussman, Kenneth S. Zaret, Ben Z. Stanger, Takeshi Katsuda

A fluorescence-based protocol to quantitatively titrate CUT&RUN buffer components

STAR Protocols(2024)10.1016/j.xpro.2024.102866

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0DataRank · unranked

1 citations

Kenneth S. Zaret, Andrew Katznelson

Basis for lineage-determining pioneer factors targeting distinct repressed chromatin states

Science Advances(2026)10.1126/sciadv.adz7409

N/A

0DataRank · unranked

0 citations

Jingchao Zhang, Greg Donahue, Kenneth S. Zaret, Andrew Katznelson

Lineage memory shapes viral resistance barriers in human skin

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.27.661951

N/A

0DataRank · unranked

1 citations

Grant Kinsler, Jingchao Zhang, Aoife O’Farrell, Rim Abderrahim, Apurv Srivastav +9 more