🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Carl G. de Boer

Broad Institute

ORCID: 0000-0001-8935-5921

Also affiliated with University of British Columbia

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile
0.676Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A community effort to optimize sequence-based deep learning models of gene regulation

Nature Biotechnology(2024)10.1038/s41587-024-02414-w
Top 30%
0.676DataRank
Top 30%35 citations

Daria Nogina, Dmitry Penzar, Dohoon Lee, Danyeong Lee, Nayeon Kim +106 more

Papers

Driven by 17 papers — median percentile 70. Top paper: “BROCKMAN: deciphering variance in epigenomic regulators by k-mer factorization”.

BROCKMAN: deciphering variance in epigenomic regulators by k-mer factorization

BMC Bioinformatics(2018)10.1186/s12859-018-2255-6
N/A
2.6DataRank · unranked
59 citations

Prisca Liberali, Carl G. de Boer

Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features

Nature Communications(2020)10.1038/s41467-020-15022-4
N/A
2.0DataRank · unranked
81 citations

Carl G. de Boer, Charles P. Fulco, Caleb A. Lareau, Masahiro Kanai, Jacob C. Ulirsch +12 more

Global discovery of lupus genetic risk variant allelic enhancer activity

Nature Communications(2021)10.1038/s41467-021-21854-5
N/A
1.7DataRank · unranked
84 citations

Xiaoting Chen, Carmy Forney, Omer Donmez, Daniel Miller, Sreeja Parameswaran +11 more

MAUDE: inferring expression changes in sorting-based CRISPR screens

Genome Biology(2020)10.1186/s13059-020-02046-8
N/A
1.3DataRank · unranked
37 citations

John P. Ray, Nir Hacohen, Prisca Liberali, John Ray, Carl G. de Boer

The evolution, evolvability and engineering of gene regulatory DNA

Nature(2022)10.1038/s41586-022-04506-6
N/A
0.854DataRank · unranked
295 citations

Carl G. de Boer, Jennifer Molinet, Moran Yassour, Lin Fan, Xian Adiconis +6 more

Core Circadian Clock Genes Regulate Leukemia Stem Cells in AML

Cell(2016)10.1016/j.cell.2016.03.015
N/A
0.843DataRank · unranked
275 citations

Monika S. Kowalczyk, Carl G. de Boer, Rebekka K. Schneider, Peter G. Miller, Marie McConkey +15 more

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli Are Altered with Age

Cell Reports(2018)10.1016/j.celrep.2018.11.056
N/A
0.791DataRank · unranked
194 citations

Arnav Mehta, Carl G. de Boer, Monika S. Kowalczyk, Kevin Lee, Pearce Haldeman +6 more

A community effort to optimize sequence-based deep learning models of gene regulation

Nature Biotechnology(2024)10.1038/s41587-024-02414-w
Top 30%
0.676DataRank
Top 30%35 citations

Daria Nogina, Dmitry Penzar, Dohoon Lee, Danyeong Lee, Nayeon Kim +106 more

Author Correction: Deciphering eukaryotic gene-regulatory logic with 100 million random promoters

Nature Biotechnology(2020)10.1038/s41587-020-0665-2
N/A
0.485DataRank · unranked
7 citations

Eeshit Dhaval Vaishnav, Ronen Sadeh, Esteban Luis Abeyta, Nir Friedman, Prisca Liberali +1 more

Post-translational modification-centric base editor screens to assess phosphorylation site functionality in high throughput

Nature Methods(2024)10.1038/s41592-024-02256-z
N/A
0.477DataRank · unranked
23 citations

Amin Alborzian Deh Sheikh, Matthew Balakar, Alexander C. Jones, Meagan E. Olive, Mudra Hegde +15 more

MAUDE: Inferring expression changes in sorting-based CRISPR screens

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/819649
N/A
0.382DataRank · unranked
3 citations

John P. Ray, Nir Hacohen, Prisca Liberali, John Ray, Carl G. de Boer

Unraveling the regulatory dynamics of bidirectional promoters for modulating gene co-expression and metabolic flux in Saccharomyces cerevisiae

Nucleic Acids Research(2025)10.1093/nar/gkaf511
N/A
0.345DataRank · unranked
9 citations

Yueming Dong, Abdul Muntakim Rafi, Md Mohsin Patwary, Catherine Xu, Morten H Raadam +3 more

Genome-wide discovery of SLE genetic risk variant allelic enhancer activity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.20.906701
N/A
0.329DataRank · unranked
4 citations

Xiaoting Chen, Carmy Forney, Omer Donmez, Daniel Miller, Sreeja Parameswaran +11 more

A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis -regulatory DNA sequences

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.17.430503
N/A
0.307DataRank · unranked
4 citations

Carl G. de Boer, Moran Yassour, Jennifer Molinet, Lin Fan, Xian Adiconis +6 more

Systematic identification of genomic elements that regulateFCGR2Aexpression and harbor variants linked with autoimmune disease

Human Molecular Genetics(2021)10.1093/hmg/ddab372
N/A
0DataRank · unranked
15 citations

Charles P. Fulco, John P Ray, Thomas Liechti, Carl G. de Boer, David Lieb +5 more

Evaluation and optimization of sequence-based gene regulatory deep learning models

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.26.538471
N/A
0DataRank · unranked
9 citations

Daria Nogina, Dmitry Penzar, Dohoon Lee, Danyeong Lee, N. S. KIM +20 more

RAPID-DASH: Fast and Efficient Assembly of Guide RNA Arrays for Multiplexed CRISPR-Cas9 Applications

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.09.648054
N/A
0DataRank · unranked
0 citations

Nicholas Mateyko, Carl G. de Boer, Asfar Lathif Salaudeen