Timothy D. Read

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.906Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome

mSystems(2024)10.1128/msystems.00143-24

Top 29%

0.688DataRank

Top 29%16 citations

Robert A. Petit, Zach Karol, R. J. MEHTA, Daniel B. Weissman, Timothy D. Read +1 more

Papers

Driven by 51 papers — median percentile 54. Top paper: “Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome”.

Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome

mSystems(2024)10.1128/msystems.00143-24

Top 29%

0.688DataRank

Top 29%16 citations

Robert A. Petit, Zach Karol, R. J. MEHTA, Daniel B. Weissman, Timothy D. Read +1 more

Comparison of genomic diversity between single and pooled Staphylococcus aureus colonies isolated from human colonization cultures

Microbial Genomics(2023)10.1099/mgen.0.001111

N/A

0.669DataRank · unranked

21 citations

Jessica J. Gunoskey, Katrina S. Hofstetter, Natasia F Jacko, Margot J. Shumaker, Yi‐Juan Hu +3 more

Species-Wide Phylogenomics of the Staphylococcus aureus Agr Operon Revealed Convergent Evolution of Frameshift Mutations

Microbiology Spectrum(2022)10.1128/spectrum.01334-21

N/A

0.553DataRank · unranked

39 citations

Ashley M. Alexander, Hui Qi Loo, Robert A. Petit, Joanna B. Goldberg, Timothy D. Read +1 more

Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes

BMC Bioinformatics(2023)10.1186/s12859-023-05363-4

N/A

0.385DataRank · unranked

12 citations

Robert A. Petit, Timothy D. Read, Daniel B. Weissman, Rohan S. Mehta

Experimentally evolved Staphylococcus aureus shows increased survival in the presence of Pseudomonas aeruginosa by acquiring mutations in the amino acid transporter, GltT

Microbiology(2024)10.1099/mic.0.001445

N/A

0.292DataRank · unranked

6 citations

Justin Luu, Vishnu Raghuram, Giulia Bottacin, Simon van Vliet, Timothy D. Read +2 more

Glucocorticoid receptor sensitivity in early pregnancy in an African American cohort

American Journal of Reproductive Immunology(2020)10.1111/aji.13252

N/A

0.241DataRank · unranked

4 citations

Elizabeth J. Corwin, Anne L. Dunlop, Allison Hankus, Joshua M. Bradner, Sudeshna Paul +8 more

Average Nucleotide Identity based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.29.577756

Top 63%

0.217DataRank

Top 63%3 citations

Robert A. Petit, Zach Karol, R. J. MEHTA, Daniel B. Weissman, Timothy D. Read +1 more

Integrative analysis of microbial 16S gene and shotgun metagenomic sequencing data improves statistical efficiency

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.27.546795

N/A

0.104DataRank · unranked

1 citations

Timothy D. Read, Veronika Fedirko, Glen A. Satten, Yi‐Juan Hu, Ye Yue

Unsuspected clonal spread of Methicillin-resistant Staphylococcus aureus causing bloodstream infections in hospitalized adults detected using whole genome sequencing

medRxiv(2021)10.1101/2021.12.23.21268338

N/A

0DataRank · unranked

0 citations

Natasia F Jacko, Robert A. Petit, David A. Pegues, Margot J. Shumaker, Timothy D. Read +2 more

Unsuspected Clonal Spread of Methicillin-Resistant Staphylococcus aureus Causing Bloodstream Infections in Hospitalized Adults Detected Using Whole Genome Sequencing

Clinical Infectious Diseases(2022)10.1093/cid/ciac339

N/A

0DataRank · unranked

21 citations

Natasia F Jacko, Robert A. Petit, David A. Pegues, Margot J. Shumaker, Timothy D. Read +2 more

A Single Amino Acid Substitution in Elongation Factor G Can Confer Low-Level Gentamicin Resistance in Neisseria gonorrhoeae

Antimicrobial Agents and Chemotherapy(2022)10.1128/aac.00251-22

N/A

0DataRank · unranked

17 citations

Vijaya Dhulipala, Jacqueline T. Balthazar, Adriana Le Van, Afrin A. Begum, Shao-Chun Chen +8 more

Unrecognized introductions of SARS-CoV-2 into the US state of Georgia shaped the early epidemic

Virus Evolution(2022)10.1093/ve/veac011

N/A

0DataRank · unranked

5 citations

Michael A. Martin, Charles Marvil, Stephanie Bellman, Robert A. Petit, Heath L. Bradley +11 more

Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in Staphylococcus aureus strains

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.31.502206

N/A

0DataRank · unranked

0 citations

Robert A. Petit, Michelle H. Davis, Timothy D. Read, Abraham Moller

Development of an Amplicon Nanopore Sequencing Strategy for Detection of Mutations Conferring Intermediate Resistance to Vancomycin in Staphylococcus aureus Strains

Microbiology Spectrum(2023)10.1128/spectrum.02728-22

N/A

0DataRank · unranked

7 citations

Robert A. Petit, Michelle H. Davis, Timothy D. Read, Abraham Moller

Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis

Frontiers in Microbiology(2023)10.3389/fmicb.2023.1154664

N/A

0DataRank · unranked

11 citations

Sankhya Bommana, Noa Ziklo, Mike Kama, Deborah Dean, Timothy D. Read +1 more

Unique microbial diversity, community composition, and networks among Pacific Islander endocervical and vaginal microbiomes with and without Chlamydia trachomatis infection in Fiji

mBio(2023)10.1128/mbio.03063-23

N/A

0DataRank · unranked

6 citations

Yi‐Juan Hu, Mike Kama, Ruohong Wang, Reshma Kodimerla, Kenan Jijakli +3 more

Transcriptional activation of ompA in Neisseria gonorrhoeae mediated by the XRE family member protein NceR

mBio(2023)10.1128/mbio.01244-23

N/A

0DataRank · unranked

4 citations

Vijaya Dhulipala, Stavaros A. Maurakis, Ashley Nicole Greenawalt, Timothy D. Read, Cynthia Nau Cornelissen +2 more

Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.25.525576

N/A

0DataRank · unranked

3 citations

Sankhya Bommana, Noa Ziklo, Mike Kama, Deborah Dean, Timothy D. Read +1 more

Comparison of genomic diversity between single and pooled Staphylococcus aureus colonies isolated from human colonisation cultures

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.14.544959

N/A

0DataRank · unranked

2 citations

Jessica J. Gunoskey, Katrina S. Hofstetter, Natasia F Jacko, Margot J. Shumaker, Yi‐Juan Hu +3 more

The Role of Hypermutation and Collateral Sensitivity in Antimicrobial Resistance Diversity of Pseudomonas aeruginosa Populations in Cystic Fibrosis Lung Infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.14.544983

N/A

0DataRank · unranked

2 citations

Sheyda Azimi, Timothy D. Read, Stephen P. Diggle, Jelly Vanderwoude

Integrative analysis of microbial 16S gene and shotgun metagenomic sequencing data improves statistical efficiency

Research Square(2023)10.21203/rs.3.rs-3376801/v1

N/A

0DataRank · unranked

1 citations

Timothy D. Read, Veronika Fedirko, Glen A. Satten, Yi‐Juan Hu, Ye Yue

The unique microbial diversity, community composition and networks of Pacific Islander endocervical and vaginal microbiomes in the presence or absence of Chlamydia trachomatis infection using metagenomic shotgun sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.23.546186

N/A

0DataRank · unranked

0 citations

Yi‐Juan Hu, Mike Kama, Ruohong Wang, Reshma Kodimerla, Kenan Jijakli +3 more

Experimentally Evolved Staphylococcus aureus Survives in the Presence of Pseudomonas aeruginosa by Acquiring Mutations in the Amino Acid Transporter, GltT

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.24.550428

N/A

0DataRank · unranked

0 citations

Justin Luu, Vishnu Raghuram, Giulia Bottacin, Simon van Vliet, Timothy D. Read +2 more

Staphylococcus aureus pangenome based on 7,954 substrains

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.10445405

N/A

0DataRank · unranked

0 citations

Vishnu Raghuram, Timothy D. Read

Towards an Optically Pumped Magnetometer Magnetoencephalography System with Full Head Coverage

OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)(2023)10.2172/2431025

N/A

0DataRank · unranked

0 citations

Amir Borna, Tony Carter, Jonathan Bainbridge, Kaleb Campbell, Timothy D. Read +12 more

The role of hypermutation and collateral sensitivity in antimicrobial resistance diversity of Pseudomonas aeruginosa populations in cystic fibrosis lung infection

mBio(2024)10.1128/mbio.03109-23

N/A

0DataRank · unranked

23 citations

Sheyda Azimi, Timothy D. Read, Stephen P. Diggle, Jelly Vanderwoude

Strain Differences in Bloodstream and Skin Infection: Methicillin-Resistant Staphylococcus aureus Isolated in 2018–2021 in a Single Health System

Open Forum Infectious Diseases(2024)10.1093/ofid/ofae261

N/A

0DataRank · unranked

9 citations

Natasia F Jacko, Margot J. Shumaker, Brooke M. Talbot, Robert A. Petit, Timothy D. Read +2 more

The Burden and Impact of Early Post-transplant Multidrug-Resistant Organism Detection Among Renal Transplant Recipients, 2005–2021

Open Forum Infectious Diseases(2024)10.1093/ofid/ofae060

N/A

0DataRank · unranked

6 citations

Geeta Karadkhele, Andrei Bombin, Rockford Watkins, Chad Robichaux, Gillian Smith +10 more

A laboratory-based predictive pathway for the development of Neisseria gonorrhoeae high-level resistance to corallopyronin A, an inhibitor of bacterial RNA polymerase

Microbiology Spectrum(2024)10.1128/spectrum.00560-24

N/A

0DataRank · unranked

3 citations

Daniel Golparian, Magnus Unemo, Timothy D. Read, Miriam Große, Marc Stadler +7 more

Staphylococcus aureus pangenome based on 7,954 substrains

Zenodo (CERN European Organization for Nuclear Research)(2024)10.5281/zenodo.10471309

N/A

0DataRank · unranked

0 citations

Vishnu Raghuram, Timothy D. Read

Staphylococcus aureus pangenome based on 7,954 substrains

Zenodo (CERN European Organization for Nuclear Research)(2024)10.5281/zenodo.10445404

N/A

0DataRank · unranked

0 citations

Vishnu Raghuram, Timothy D. Read

Staphylococcus aureus pangenome based on 7,954 substrains

Zenodo (CERN European Organization for Nuclear Research)(2024)10.5281/zenodo.10458313

N/A

0DataRank · unranked

0 citations

Vishnu Raghuram, Timothy D. Read

Intraspecific Diversity of Staphylococcus aureus Populations Isolated from Cystic Fibrosis Respiratory Infections

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.16.623925

N/A

0DataRank · unranked

0 citations

Hui Qi Loo, Lauren C. Askew, Vishnu Raghuram, Timothy D. Read, Joanna B. Goldberg +1 more

Staphylococcus aureus induces Gasdermin A-dependent keratinocyte pyroptosis

Nature Communications(2025)10.1038/s41467-025-65674-3

N/A

0DataRank · unranked

7 citations

Jacob D. Sherman, Chen Qu, William Shu Ching Ngai, Timothy D. Read, Martin J. McGavin +2 more

Whole-genome automated assembly pipeline for Chlamydia trachomatis strains from reference, in vitro and clinical samples using the integrated CtGAP pipeline

NAR Genomics and Bioinformatics(2025)10.1093/nargab/lqae187

N/A

0DataRank · unranked

6 citations

Ammar Aziz, Lucile H Zhu, Timothy D. Read, Deborah Dean, Olusola Olagoke

Azithromycin alters the microbiome composition, function and resistome in women with Chlamydia trachomatis infections

npj Biofilms and Microbiomes(2025)10.1038/s41522-025-00858-9

N/A

0DataRank · unranked

1 citations

Olusola Olagoke, Yi‐Juan Hu, Ruohong Wang, Mike Kama, Morgan Dehdashti +4 more

A fluorescence-based protocol to monitor bacterial antagonism

Microbiology Spectrum(2025)10.1128/spectrum.03183-24

N/A

0DataRank · unranked

2 citations

Cristian V. Crisan, Morgan L. Pettis, Anayancy Ramos, Timothy D. Read, Joanna B. Goldberg +1 more

Methicillin-Resistant Staphylococcus aureus Bacteremia Relapses Show Diverse Genomic Profiles but Convergence in Bacteremia-Associated Genes

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf352

N/A

0DataRank · unranked

1 citations

Natasia F Jacko, Katrina S. Hofstetter, Tara Alahakoon, Kévin Bouiller, Timothy D. Read +2 more

Integrative Analysis of Microbial 16S Gene and Shotgun Metagenomic Sequencing Data Improves Statistical Efficiency in Testing Differential Abundance

Journal of the American Statistical Association(2025)10.1080/01621459.2025.2516205

N/A

0DataRank · unranked

1 citations

Yicong Mao, Timothy D. Read, Veronika Fedirko, Glen A. Satten, Xuan Chen +3 more

Host and antibiotic jointly select for greater virulence in Staphylococcus aureus

eLife(2025)10.7554/elife.107936.1

N/A

0DataRank · unranked

1 citations

Kim L. Hoang, McKenna J. Penley, Michelle H. Davis, Jennifer D. Gresham, Levi T. Morran +2 more

Host and antibiotic jointly select for greater virulence in Staphylococcus aureus

eLife(2025)10.7554/elife.107936

N/A

0DataRank · unranked

1 citations

Kim L. Hoang, McKenna J. Penley, Michelle H. Davis, Jennifer D. Gresham, Levi T. Morran +2 more

Transition of Staphylococcus aureus tetracycline resistance plasmid pT181 from independent multicopy replicon to predominantly integrated chromosomal element over 65 years

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.14.675889

N/A

0DataRank · unranked

0 citations

Robert A. Petit, Daniel B. Weissman, Timothy D. Read, Megan Phillips

Genotypic and Phenotypic Diversity of Staphylococcus aureus Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with Pseudomonas aeruginosa

mBio(2020)10.1128/mbio.00735-20

N/A

0DataRank · unranked

68 citations

Robert A. Petit, Vishnu Raghuram, Ashley M. Alexander, Timothy D. Read, Joanna B. Goldberg +1 more

Putative azithromycin-resistance mutations in Chlamydia trachomatis are globally distributed but arose before azithromycin was discovered

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.10.687758

N/A

0DataRank · unranked

0 citations

Deborah Dean, Timothy D. Read, Parul Sharma

Genes influencing phage host range in Staphylococcus aureus on a species-wide scale

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.24.218685

N/A

0DataRank · unranked

2 citations

Kyle Winston, Shiyu Ji, Junting Wang, Michelle N. Hargita Davis, Claudia Solís‐Lemus +2 more

Vaginal Microbiome Composition in Early Pregnancy and Risk of Spontaneous Preterm and Early Term Birth Among African American Women

Frontiers in Cellular and Infection Microbiology(2021)10.3389/fcimb.2021.641005

N/A

0DataRank · unranked

89 citations

Glen A. Satten, Yi‐Juan Hu, Anna K. Knight, Cherie C. Hill, Michelle L. Wright +5 more

Genes Influencing Phage Host Range in Staphylococcus aureus on a Species-Wide Scale

mSphere(2021)10.1128/msphere.01263-20

N/A

0DataRank · unranked

50 citations

Kyle Winston, Shiyu Ji, Junting Wang, Michelle N. Hargita Davis, Claudia Solís‐Lemus +2 more

Structures of Neisseria gonorrhoeae MtrR-operator complexes reveal molecular mechanisms of DNA recognition and antibiotic resistance-conferring clinical mutations

Nucleic Acids Research(2021)10.1093/nar/gkab213

N/A

0DataRank · unranked

20 citations

Julio C. Ayala, Logan G. Kavanaugh, Timothy D. Read, Grace M. Hooks, Maria A. Schumacher +3 more

Species-wide phylogenomics of the Staphylococcus aureus agr operon reveals convergent evolution of frameshift mutations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.29.454156

N/A

0DataRank · unranked

0 citations

Ashley M. Alexander, Hui Qi Loo, Robert A. Petit, Joanna B. Goldberg, Timothy D. Read +1 more

Species-scale genomic analysis of S. aureus genes influencing phage host range and their relationships to virulence and antibiotic resistance genes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.23.457453

N/A

0DataRank · unranked

0 citations

Robert A. Petit, Timothy D. Read, Abraham Moller

Unrecognized introductions of SARS-CoV-2 into the state of Georgia shaped the early epidemic

medRxiv(2021)10.1101/2021.09.19.21262615

N/A

0DataRank · unranked

0 citations

Michael A. Martin, Charles Marvil, Stephanie Bellman, Robert A. Petit, Heath L. Bradley +8 more

Timothy D. Read

Indexed papers

Top data-sharing exemplar

Papers