Joe Pogliano

Environmental ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.292Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Machine Learning of Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.454220

Top 56%

0.292DataRank

Top 56%4 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie +3 more

Papers

Driven by 50 papers — median percentile 44. Top paper: “Antimicrobials from a feline commensal bacterium inhibit skin infection by drug-resistant S. pseudintermedius”.

Antimicrobials from a feline commensal bacterium inhibit skin infection by drug-resistant S. pseudintermedius

eLife(2021)10.7554/elife.66793

N/A

1.0DataRank · unranked

28 citations

Kate A. Worthing, Nikhil N Kulkarni, Fengwu Li, Teruaki Nakatsuji, Dominic McGrosso +9 more

Structure and Mechanism of a Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity

Molecular Cell(2020)10.1016/j.molcel.2019.12.010

N/A

0.805DataRank · unranked

213 citations

Qiaozhen Ye, Erica A. Birkholz, Kyle R. Berg, Lucas Patel, Ian T. Mathews +10 more

A phage nucleus-associated RNA-binding protein is required for jumbo phage infection

Nucleic Acids Research(2024)10.1093/nar/gkae216

N/A

0.792DataRank · unranked

23 citations

Emily G. Armbruster, Jina Lee, Sitao Zhang, Brian A. Yee, Kseniya Malukhina +16 more

An intron endonuclease facilitates interference competition between coinfecting viruses

Science(2024)10.1126/science.adl1356

N/A

0.788DataRank · unranked

22 citations

Chase J. Morgan, Thomas G. Laughlin, Rebecca Lau, Amy Prichard, Sahana Rangarajan +10 more

A novel vibriophage exhibits inhibitory activity against host protein synthesis machinery

Scientific Reports(2020)10.1038/s41598-020-59396-3

N/A

0.574DataRank · unranked

45 citations

MacKennon E. Egan, Htut Htut Htoo, Kanika Khanna, Joseph Sugie, Jason F. Nideffer +6 more

Machine learning fromPseudomonas aeruginosatranscriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

Nucleic Acids Research(2022)10.1093/nar/gkac187

N/A

0.568DataRank · unranked

43 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie +3 more

Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media

GigaScience(2021)10.1093/gigascience/giaa156

N/A

0.548DataRank · unranked

15 citations

Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson +14 more

CRISPRi-ART enables functional genomics of diverse bacteriophages using RNA-binding dCas13d

Nature Microbiology(2025)10.1038/s41564-025-01935-7

N/A

0.489DataRank · unranked

25 citations

Muntathar J. Al-Shimary, Jaymin R. Patel, Emily G. Armbruster, David Colognori, Emeric J. Charles +18 more

Architecture and self-assembly of the jumbo bacteriophage nuclear shell

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.14.480162

N/A

0.442DataRank · unranked

18 citations

Amar Deep, Amy Prichard, Christian Seitz, Yajie Gu, Eray Enüstün +10 more

Architecture and infection-sensing mechanism of the bacterial PARIS defense system

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.02.573835

N/A

0.373DataRank · unranked

11 citations

Qishan Liang, Eray Enüstün, Joe Pogliano, Kevin D. Corbett, Amar Deep

Revealing 29 sets of independently modulated genes in Staphylococcus aureus , their regulators and role in key physiological responses

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.18.997296

N/A

0.330DataRank · unranked

8 citations

Hannah Tsunemoto, Yara Seif, Anand V. Sastry, Richard Szubin, Sibei Xu +7 more

A Cytoskeletal Vortex Drives Phage Nucleus Rotation During Jumbo Phage Replication in E. coli

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.25.465362

N/A

0.330DataRank · unranked

8 citations

Thomas G. Laughlin, Sergey Suslov, Emily G. Armbruster, Jin‐A Lee, Johannes Wittmann +4 more

A phage nucleus-associated RNA-binding protein is required for jumbo phage infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.22.559000

N/A

0.312DataRank · unranked

7 citations

Emily G. Armbruster, Jina Lee, Sitao Zhang, Brian A. Yee, Yajie Gu +14 more

A ribosome-interacting jumbophage protein associates with the phage nucleus to facilitate efficient propagation

PLoS Pathogens(2025)10.1371/journal.ppat.1012936

N/A

0.312DataRank · unranked

7 citations

Sucheewin Krobthong, Chase J. Morgan, Emily G. Armbruster, Milan Gerovac, Yodying Yingchutrakul +7 more

Machine Learning of Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.454220

Top 56%

0.292DataRank

Top 56%4 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie +3 more

Profiling the effect of nafcillin on HA-MRSA D592 using bacteriological and physiological media

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.30.070904

N/A

0.219DataRank · unranked

3 citations

Saugat Poudel, Hannah Tsunemoto, Richard Szubin, Michael J. Meehan, Connor A. Olson +15 more

Subcellular Organization of Viral Particles During Maturation of Nucleus-Forming Jumbo Phage

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.26.441357

N/A

0.208DataRank · unranked

3 citations

Kanika Khanna, Katrina Nguyen, MacKennon E. Egan, Eray Enüstün, Emily G. Armbruster +4 more

Identifying the core genome of the nucleus-forming bacteriophage family and characterization of Erwinia phage RAY

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.24.529968

N/A

0.165DataRank · unranked

2 citations

Jina Lee, Thomas G. Laughlin, Amber Lee, Kyle P. Thomas, Annika Sy +34 more

Characterizing the response of Acinetobacter baumannii ATCC 17978 to azithromycin in multiple in vitro growth conditions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.19.079962

N/A

0.165DataRank · unranked

2 citations

Yara Seif, Hannah Tsunemoto, Saugat Poudel, Michael J. Meehan, Richard Szubin +15 more

Thienopyrimidine amide analogs target MmpL3 in Mycobacterium tuberculosis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.26.661674

N/A

0.104DataRank · unranked

1 citations

Christopher L. Harding, Diana Quach, Joseph Sugie, Joe Pogliano, Tanya Parish +1 more

Genome integrity sensing by the broad-spectrum Hachiman antiphage defense complex

Cell(2024)10.1016/j.cell.2024.09.020

N/A

0DataRank · unranked

39 citations

Benjamin A. Adler, Emily G. Armbruster, Arushi Lahiri, Jason J. Hu, Julia Zhou +3 more

An essential and highly selective protein import pathway encoded by nucleus-forming phage

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2321190121

N/A

0DataRank · unranked

22 citations

Eray Enüstün, Emily G. Armbruster, Erica A. Birkholz, Amy Prichard, Taylor Forman +15 more

The intricate organizational strategy of nucleus-forming phages

Current Opinion in Microbiology(2024)10.1016/j.mib.2024.102457

N/A

0DataRank · unranked

17 citations

Joe Pogliano, Amy Prichard

An essential and highly selective protein import pathway encoded by nucleus-forming phage

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.21.585822

N/A

0DataRank · unranked

2 citations

Eray Enüstün, Emily G. Armbruster, Erica A. Birkholz, Amy Prichard, Taylor Forman +15 more

Asesino: a nucleus-forming phage that lacks PhuZ

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.10.593592

N/A

0DataRank · unranked

2 citations

Annika Sy, Justin R. Meyer, Elizabeth Villa, Joe Pogliano, Amy Prichard

Sequential membrane- and protein-bound organelles compartmentalize genomes during phage infection

Cell Host & Microbe(2025)10.1016/j.chom.2025.03.005

N/A

0DataRank · unranked

20 citations

Phoolwanti Rani, Jina Lee, N. Klusch, Joshua Hutchings, Lizbeth Y. Hoffman +22 more

A miniature CRISPR–Cas10 enzyme confers immunity by inhibitory signalling

Nature(2025)10.1038/s41586-025-09569-9

N/A

0DataRank · unranked

14 citations

Benjamin A. Adler, Peter H. Yoon, K.‐H. HSIEH, Kenneth J. Loi, Emily G. Armbruster +8 more

Phage SSB detection by retron Eco8 msDNA unleashes nuclease-mediated immunity

Molecular Cell(2025)10.1016/j.molcel.2025.10.007

N/A

0DataRank · unranked

7 citations

Chen Wang, Taylor Forman, Jiale Xie, Samantha Major, Matthew X. Fang +4 more

Thienopyrimidine amide analogs target MmpL3 in Mycobacterium tuberculosis

Antimicrobial Agents and Chemotherapy(2025)10.1128/aac.00980-25

N/A

0DataRank · unranked

1 citations

Christopher L. Harding, Diana Quach, Joseph Sugie, Joe Pogliano, Tanya Parish +1 more

A bacteriophage tubulin forms microtubule-like assemblies with nine protofilaments

Structure(2025)10.1016/j.str.2025.12.002

N/A

0DataRank · unranked

0 citations

Siyu Chen, Yingxing Li, N. Klusch, Koe Inlow, Joe Pogliano +3 more

Erwinia phage Asesino is a nucleus-forming phage that lacks PhuZ

Scientific Reports(2025)10.1038/s41598-024-64095-4

N/A

0DataRank · unranked

10 citations

Annika Sy, Justin R. Meyer, Elizabeth Villa, Joe Pogliano, Amy Prichard

HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity

Molecular Cell(2020)10.1016/j.molcel.2019.12.009

N/A

0DataRank · unranked

181 citations

Rebecca Lau, Ian T. Mathews, Erica A. Birkholz, Jeramie D. Watrous, Camillia S. Azimi +4 more

Selective transport of fluorescent proteins into the phage nucleus

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.25.398438

N/A

0DataRank · unranked

7 citations

Joseph Sugie, Kanika Khanna, MacKennon E. Egan, Erica A. Birkholz, Jina Lee +4 more

Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.06.079640

N/A

0DataRank · unranked

0 citations

Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson +14 more

The Phage Nucleus and PhuZ Spindle: Defining Features of the Subcellular Organization and Speciation of Nucleus-Forming Jumbo Phages

Frontiers in Microbiology(2021)10.3389/fmicb.2021.641317

N/A

0DataRank · unranked

43 citations

Erica A. Birkholz, Joe Pogliano, Vorrapon Chaikeeratisak

Viral speciation through subcellular genetic isolation and virogenesis incompatibility

Nature Communications(2021)10.1038/s41467-020-20575-5

N/A

0DataRank · unranked

30 citations

Erica A. Birkholz, Amy Prichard, MacKennon E. Egan, Avani Mylvara, Poochit Nonejuie +5 more

Selective transport of fluorescent proteins into the phage nucleus

PLoS ONE(2021)10.1371/journal.pone.0251429

N/A

0DataRank · unranked

28 citations

Joseph Sugie, Kanika Khanna, MacKennon E. Egan, Erica A. Birkholz, Jina Lee +4 more

Bacterial Cytological Profiling Identifies Rhodanine-Containing PAINS Analogs as Specific Inhibitors of Escherichia coli Thymidylate Kinase In Vivo

Journal of Bacteriology(2021)10.1128/jb.00105-21

N/A

0DataRank · unranked

14 citations

Jason F. Nideffer, Joseph Sugie, Eray Enüstün, Adam B. Shapiro, Hannah Tsunemoto +4 more

Architecture and self-assembly of the jumbo bacteriophage nuclear shell

Nature(2022)10.1038/s41586-022-05013-4

N/A

0DataRank · unranked

114 citations

Amar Deep, Amy Prichard, Christian Seitz, Yajie Gu, Eray Enüstün +10 more

A cytoskeletal vortex drives phage nucleus rotation during jumbo phage replication in E. coli

Cell Reports(2022)10.1016/j.celrep.2022.111179

N/A

0DataRank · unranked

43 citations

Thomas G. Laughlin, Emily G. Armbruster, Sergey Suslov, Jina Lee, Johannes Wittmann +4 more

Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa

Nucleic Acids Research(2022)10.1093/nar/gkac743

N/A

0DataRank · unranked

36 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Siddharth Chauhan +3 more

Replication Compartments of Eukaryotic and Bacterial DNA Viruses: Common Themes Between Different Domains of Host Cells

Annual Review of Virology(2022)10.1146/annurev-virology-012822-125828

N/A

0DataRank · unranked

35 citations

Amy Prichard, Surendra Sharma, Joe Pogliano, David M. Knipe

Isolation and characterization of Streptomyces bacteriophages and Streptomyces strains encoding biosynthetic arsenals

PLoS ONE(2022)10.1371/journal.pone.0262354

N/A

0DataRank · unranked

0 citations

Jason F. Nideffer, Lauren Brumage, Marcella L. Erb, Julia Busch, Lynley Fernandez +36 more

Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.04.487074

N/A

0DataRank · unranked

0 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Siddharth Chauhan +3 more

Identifying the core genome of the nucleus-forming bacteriophage family and characterization of Erwinia phage RAY

Cell Reports(2023)10.1016/j.celrep.2023.112432

N/A

0DataRank · unranked

65 citations

Jina Lee, Thomas G. Laughlin, Amber Lee, Kyle P. Thomas, Annika Sy +34 more

Identification of the bacteriophage nucleus protein interaction network

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01094-5

N/A

0DataRank · unranked

27 citations

Amar Deep, Yajie Gu, Katrina Nguyen, Vorrapon Chaikeeratisak, Emily G. Armbruster +5 more

Bacterial cytological profiling reveals interactions between jumbo phage φKZ infection and cell wall active antibiotics in Pseudomonas aeruginosa

PLoS ONE(2023)10.1371/journal.pone.0280070

N/A

0DataRank · unranked

12 citations

Joseph Sugie, Eray Enüstün, Kit Pogliano, Joe Pogliano, Hannah Tsunemoto

A transcriptionally active lipid vesicle encloses the injected Chimalliviridae genome in early infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.20.558163

N/A

0DataRank · unranked

24 citations

Phoolwanti Rani, Jina Lee, N. Klusch, Joshua Hutchings, Lloyd A. Hoffman +22 more

A mobile intron facilitates interference competition between co-infecting viruses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.30.560319

N/A

0DataRank · unranked

6 citations

Chase J. Morgan, Thomas G. Laughlin, Rebecca Lau, Amy Prichard, Sahana Rangarajan +10 more

Identification of the bacteriophage nucleus protein interaction network

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.18.541317

N/A

0DataRank · unranked

4 citations

Amar Deep, Yajie Gu, Katrina Nguyen, Vorrapon Chaikeeratisak, Emily G. Armbruster +5 more

Joe Pogliano

Indexed papers

Top data-sharing exemplar

Papers