Shuangge Ma

Also affiliated with Yale New Haven Health System

Biochemistry, Genetics and Molecular BiologyMathematics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 83 papers. Top paper: “SARS-CoV-2 mRNA vaccines decouple anti-viral immunity from humoral autoimmunity”.

SARS-CoV-2 mRNA vaccines decouple anti-viral immunity from humoral autoimmunity

Nature Communications(2023)10.1038/s41467-023-36686-8

N/A

1.7DataRank · unranked

46 citations

Carolina Lucas, İnci Yıldırım, Yile Dai, Eric Y. Wang, Valter Silva Monteiro +13 more

A nested case-control study of serum polychlorinated biphenyls and papillary thyroid cancer risk among U.S. military service members

Environmental Research(2022)10.1016/j.envres.2022.113367

N/A

1.0DataRank · unranked

26 citations

Huang Huang, Andreas Sjödin, Lan Jin, Shuangge Ma, Hristina Denic‐Roberts +10 more

Saliva viral load is a dynamic unifying correlate of COVID-19 severity and mortality

medRxiv(2021)10.1101/2021.01.04.21249236

N/A

0.712DataRank · unranked

114 citations

Carolina Lucas, Maria E. Sundaram, Benjamin Israelow, Patrick Wong, Jon Klein +33 more

Kynurenic acid may underlie sex-specific immune responses to COVID-19

Science Signaling(2021)10.1126/scisignal.abf8483

N/A

0.683DataRank · unranked

94 citations

Daniel Kim, Takehiro Takahashi, David Broadhurst, Hong Yan, Shuangge Ma +16 more

No evidence of fetal defects or anti-syncytin-1 antibody induction following COVID-19 mRNA vaccination

PLoS Biology(2022)10.1371/journal.pbio.3001506

N/A

0.406DataRank · unranked

14 citations

Alexandra Tabachnikova, Eddy Pérez-Then, Maria Tokuyama, Hannah Lee, Carolina Lucas +19 more

Intranasal hemagglutinin protein boosters induce protective mucosal immunity against influenza A viruses in mice

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2422171122

N/A

0.385DataRank · unranked

12 citations

Gisele Rodrigues, Jiping Wang, Radeesha Jayewickreme, Andrew Hudak, Huiping Dong +4 more

Biclustering analysis of functionals via penalized fusion

Journal of Multivariate Analysis(2021)10.1016/j.jmva.2021.104874

N/A

0.330DataRank · unranked

8 citations

Yuanxing Chen, Shuangge Ma, Qingzhao Zhang, Kuangnan Fang

Vertical integration methods for gene expression data analysis

Briefings in Bioinformatics(2020)10.1093/bib/bbaa169

N/A

0.330DataRank · unranked

8 citations

Huangdi Yi, Shuangge Ma, Mengyun Wu

Endocrine disrupting chemical mixture exposure and risk of papillary thyroid cancer in U.S. military personnel: A nested case-control study

The Science of The Total Environment(2024)10.1016/j.scitotenv.2024.171342

N/A

0.312DataRank · unranked

7 citations

Jordan McAdam, Andreas Sjödin, Mark Davis, Richard S. Jones, Mary H. Ward +5 more

The spike‐and‐slab quantile LASSO for robust variable selection in cancer genomics studies

Statistics in Medicine(2024)10.1002/sim.10196

N/A

0.292DataRank · unranked

6 citations

Jie Ren, Shuangge Ma, Cen Wu, Yuwen Liu

Prediction Consistency Regularization for Learning with Noise Labels Based on Contrastive Clustering

Entropy(2024)10.3390/e26040308

N/A

0.208DataRank · unranked

3 citations

Sanguo Zhang, Shuangge Ma, Xinkai Sun

Survival Analysis with High-Dimensional Omics Data Using a Threshold Gradient Descent Regularization-Based Neural Network Approach

Genes(2022)10.3390/genes13091674

N/A

0.208DataRank · unranked

3 citations

Sanguo Zhang, Shuangge Ma, Yu Fan

A General Framework for Identifying Hierarchical Interactions and Its Application to Genomics Data

Journal of Computational and Graphical Statistics(2022)10.1080/10618600.2022.2152034

N/A

0.165DataRank · unranked

2 citations

Xingjie Shi, Yiming Liu, Xu Liu, Shuangge Ma, Xiao Zhang

High-Dimensional Gene–Environment Interaction Analysis

Annual Review of Statistics and Its Application(2024)10.1146/annurev-statistics-112723-034315

N/A

0.121DataRank · unranked

1 citations

Yingmeng Li, Shuangge Ma, Mengyun Wu

HeteroGGM: an R package for Gaussian graphical model-based heterogeneity analysis

Bioinformatics(2021)10.1093/bioinformatics/btab134

N/A

0DataRank · unranked

6 citations

Sanguo Zhang, Qingzhao Zhang, Shuangge Ma, Mingyang Ren

Gene–environment interaction identification via penalized robust divergence

Biometrical Journal(2021)10.1002/bimj.202000157

N/A

0DataRank · unranked

4 citations

Sanguo Zhang, Shuangge Ma, Qingzhao Zhang, Mingyang Ren

Assisted estimation of gene expression graphical models

Genetic Epidemiology(2021)10.1002/gepi.22377

N/A

0DataRank · unranked

3 citations

Qingzhao Zhang, Yifan Sun, Shuangge Ma, Huangdi Yi

Marginal false discovery rate for a penalized transformation survival model

Computational Statistics & Data Analysis(2021)10.1016/j.csda.2021.107232

N/A

0DataRank · unranked

3 citations

Shuangge Ma, Cunjie Lin, Weijuan Liang

Biomarker‐guided heterogeneity analysis of genetic regulations via multivariate sparse fusion

Statistics in Medicine(2021)10.1002/sim.9006

N/A

0DataRank · unranked

0 citations

Xiaonan Hu, Ziye Luo, Yu Jiang, Yifan Sun, Shuangge Ma +1 more

Robust Bayesian Variable Selection for Gene–Environment Interactions

Biometrics(2022)10.1111/biom.13670

N/A

0DataRank · unranked

26 citations

Fei Zhou, Xiaoxi Li, Shuangge Ma, Yu Jiang, Cen Wu +1 more

Rank-Based Greedy Model Averaging for High-Dimensional Survival Data

Journal of the American Statistical Association(2022)10.1080/01621459.2022.2070070

N/A

0DataRank · unranked

13 citations

Shuangge Ma, Xinyu Zhang, Lixing Zhu, Baihua He

Sparse group variable selection for gene–environment interactions in the longitudinal study

Genetic Epidemiology(2022)10.1002/gepi.22461

N/A

0DataRank · unranked

10 citations

Lü Xi, Jie Ren, Kun Fan, Shuangge Ma, Cen Wu +1 more

Comparative Analysis of Social Support in Online Health Communities Using a Word Co-Occurrence Network Analysis Approach

Entropy(2022)10.3390/e24020174

N/A

0DataRank · unranked

10 citations

Zou Xia, Jiyin Chen, Shuangge Ma, Mengque Liu

Replicability in cancer omics data analysis: measures and empirical explorations

Briefings in Bioinformatics(2022)10.1093/bib/bbac304

N/A

0DataRank · unranked

7 citations

Hongmin Liang, Qingzhao Zhang, Shuangge Ma, Jiping Wang

Network-based cancer heterogeneity analysis incorporating multi-view of prior information

Bioinformatics(2022)10.1093/bioinformatics/btac183

N/A

0DataRank · unranked

6 citations

Shaodong Xu, Shuangge Ma, Mengyun Wu, Yang Li

Spatio-temporally smoothed deep survival neural network

Journal of Biomedical Informatics(2022)10.1016/j.jbi.2022.104255

N/A

0DataRank · unranked

5 citations

Dongzuo Liang, Shuangge Ma, Chenjin Ma, Yang Li

GEInfo: an R package for gene–environment interaction analysis incorporating prior information

Bioinformatics(2022)10.1093/bioinformatics/btac301

N/A

0DataRank · unranked

1 citations

Hongduo Liu, Shuangge Ma, Xiaoyan Wang

Unified model-free interaction screening via CV-entropy filter

Computational Statistics & Data Analysis(2022)10.1016/j.csda.2022.107684

N/A

0DataRank · unranked

1 citations

Yaxian Chen, Shuangge Ma, Wei Xiong

Two-Level Bayesian Interaction Analysis for Survival Data Incorporating Pathway Information

Biometrics(2022)10.1111/biom.13811

N/A

0DataRank · unranked

4 citations

Shuangge Ma, Mengyun Wu, Xing Qin

Default risk prediction and feature extraction using a penalized deep neural network

Statistics and Computing(2022)10.1007/s11222-022-10140-z

N/A

0DataRank · unranked

4 citations

Nan Qiao, Wenli Zhang, Yang Li, Shuangge Ma, Cunjie Lin

Bayesian hierarchical finite mixture of regression for histopathological imaging‐based cancer data analysis

Statistics in Medicine(2022)10.1002/sim.9309

N/A

0DataRank · unranked

2 citations

Yuan Huang, Jian Huang, Shuangge Ma, Yunju Im

A tree‐based gene–environment interaction analysis with rare features

Statistical Analysis and Data Mining The ASA Data Science Journal(2022)10.1002/sam.11578

N/A

0DataRank · unranked

4 citations

Qingzhao Zhang, Shuangge Ma, Mengque Liu

iSFun: an R package for integrative dimension reduction analysis

Bioinformatics(2022)10.1093/bioinformatics/btac281

N/A

0DataRank · unranked

1 citations

Rui Ren, Qingzhao Zhang, Shuangge Ma, Kuangnan Fang

Gene–environment interaction analysis via deep learning

Genetic Epidemiology(2023)10.1002/gepi.22518

N/A

0DataRank · unranked

16 citations

Yaqing Xu, Qingzhao Zhang, Shuangge Ma, Shuni Wu

The Bayesian regularized quantile varying coefficient model

Computational Statistics & Data Analysis(2023)10.1016/j.csda.2023.107808

N/A

0DataRank · unranked

10 citations

Jie Ren, Shuangge Ma, Cen Wu, Fei Zhou

Locally sparse quantile estimation for a partially functional interaction model

Computational Statistics & Data Analysis(2023)10.1016/j.csda.2023.107782

N/A

0DataRank · unranked

7 citations

Qingzhao Zhang, Shuangge Ma, Weijuan Liang

Prior information-assisted integrative analysis of multiple datasets

Bioinformatics(2023)10.1093/bioinformatics/btad452

N/A

0DataRank · unranked

8 citations

Dongzuo Liang, Yang Li, Shuangge Ma, Feifei Wang

Pathological Imaging-Assisted Cancer Gene–Environment Interaction Analysis

Biometrics(2023)10.1111/biom.13873

N/A

0DataRank · unranked

5 citations

Jingmao Li, Qingzhao Zhang, Yaqing Xu, Shuangge Ma, Kuangnan Fang

Hierarchical false discovery rate control for high-dimensional survival analysis with interactions

Computational Statistics & Data Analysis(2023)10.1016/j.csda.2023.107906

N/A

0DataRank · unranked

4 citations

Qingzhao Zhang, Shuangge Ma, Weijuan Liang

Bi-Level Structured Functional Analysis for Genome-Wide Association Studies

Biometrics(2023)10.1111/biom.13871

N/A

0DataRank · unranked

2 citations

Fan Wang, Yeheng Ge, Shuangge Ma, Yang Li, Mengyun Wu

Aligned deep neural network for integrative analysis with high-dimensional input

Journal of Biomedical Informatics(2023)10.1016/j.jbi.2023.104434

N/A

0DataRank · unranked

2 citations

Sanguo Zhang, Huangdi Yi, Shuangge Ma, Shunqin Zhang

Locally sparse quantile estimation for a partially functional interaction model

arXiv (Cornell University)(2023)10.48550/arxiv.2301.03705

N/A

0DataRank · unranked

3 citations

Qingzhao Zhang, Shuangge Ma, Weijuan Liang

Gene–environment interaction analysis under the Cox model

Annals of the Institute of Statistical Mathematics(2023)10.1007/s10463-023-00871-9

N/A

0DataRank · unranked

0 citations

Jingmao Li, Yaqing Xu, Shuangge Ma, Qingzhao Zhang, Kuangnan Fang

The Bayesian Regularized Quantile Varying Coefficient Model

arXiv (Cornell University)(2023)10.48550/arxiv.2306.11880

N/A

0DataRank · unranked

0 citations

Jie Ren, Shuangge Ma, Cen Wu, Fei Zhou

Hierarchical False Discovery Rate Control for High-dimensional Survival Analysis with Interactions

arXiv (Cornell University)(2023)10.48550/arxiv.2311.13767

N/A

0DataRank · unranked

0 citations

Qingzhao Zhang, Shuangge Ma, Weijuan Liang

FunctanSNP: an R package for functional analysis of dense SNP data (with interactions)

Bioinformatics(2023)10.1093/bioinformatics/btad741

N/A

0DataRank · unranked

0 citations

Kuangnan Fang, Qingzhao Zhang, Shuangge Ma, Rui Ren

Organochlorine pesticides and risk of papillary thyroid cancer in U.S. military personnel: a nested case-control study

Environmental Health(2024)10.1186/s12940-024-01068-0

N/A

0DataRank · unranked

11 citations

Jordan McAdam, Hristina Denic‐Roberts, Andreas Sjödin, Mark Davis, Richard S. Jones +5 more

A quantitative linguistic analysis of a cancer online health community with a smooth latent space model

The Annals of Applied Statistics(2024)10.1214/23-aoas1783

N/A

0DataRank · unranked

2 citations

Xinyan Fan, Shuangge Ma, Mengque Liu

Incorporating prior information in gene expression network-based cancer heterogeneity analysis

Biostatistics(2024)10.1093/biostatistics/kxae028

N/A

0DataRank · unranked

1 citations

Shaodong Xu, Yang Li, Zuojian Tang, Di Feng, James J. Cai +2 more

Estimation of multiple networks with common structures in heterogeneous subgroups

Journal of Multivariate Analysis(2024)10.1016/j.jmva.2024.105298

N/A

0DataRank · unranked

0 citations

Jianhua Hu, Shuangge Ma, Mengyun Wu, Xing Qin

Neurogenetic underpinnings of nicotine use severity: Integrating the brain transcriptomes and GWAS variants via network approaches

Psychiatry Research(2024)10.1016/j.psychres.2024.115815

N/A

0DataRank · unranked

0 citations

Bo Xiang, Tingting Wang, Shuangge Ma, Chiang‐Shan R. Li, Bao‐Zhu Yang

Regulation-Incorporated Gene Expression Network-Based Heterogeneity Analysis

Statistica Sinica(2024)10.5705/ss.202023.0109

N/A

0DataRank · unranked

0 citations

Qingzhao Zhang, Shuangge Ma, Rong Li

Information‐incorporated sparse hierarchical cancer heterogeneity analysis

Statistics in Medicine(2024)10.1002/sim.10071

N/A

0DataRank · unranked

0 citations

Sanguo Zhang, Shuangge Ma, Mingyang Ren, Wei Han

The Spike-and-Slab Quantile LASSO for Robust Variable Selection in Cancer Genomics Studies

arXiv (Cornell University)(2024)10.48550/arxiv.2405.07397

N/A

0DataRank · unranked

0 citations

Jie Ren, Shuangge Ma, Cen Wu, Yuwen Liu

Partial Hepatectomy and Ablation for Survival of Early-Stage Hepatocellular Carcinoma Patients: A Bayesian Emulation Analysis

Life(2024)10.3390/life14060661

N/A

0DataRank · unranked

0 citations

Yunju Im, Rong Wang, Shuangge Ma, Jiping Wang

A machine learning and drug repurposing approach to target ferroptosis in colorectal cancer stratified by sex and KRAS

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.24.600340

N/A

0DataRank · unranked

0 citations

Xinyi Shen, Yisha Yao, Sajid Khan, Shuangge Ma, Caroline H. Johnson +1 more

Joint identification of spatially variable genes via a network-assisted Bayesian regularization approach

arXiv (Cornell University)(2024)10.48550/arxiv.2407.05241

N/A

0DataRank · unranked

0 citations

Yang Li, Shuangge Ma, Mengyun Wu, Mingcong Wu

Deep Transformation Model

arXiv (Cornell University)(2024)10.48550/arxiv.2410.19226

N/A

0DataRank · unranked

0 citations

Shunqin Zhang, Sanguo Zhang, Jian Huang, Shuangge Ma, Tong Wang

Grouped Heterogeneous Gaussian Graphical Models for High-Dimensional Clustered Data

Statistica Sinica(2024)10.5705/ss.202024.0258

N/A

0DataRank · unranked

0 citations

Shuangge Ma, Qingzhao Zhang, Xin Zeng

Robust sparse Bayesian regression for longitudinal gene–environment interactions

Journal of the Royal Statistical Society Series C (Applied Statistics)(2025)10.1093/jrsssc/qlaf027

N/A

0DataRank · unranked

3 citations

Yu Jiang, Shuangge Ma, Weiqun Wang, Cen Wu, Kun Fan

Subgroup Testing in the Change‐Plane Cox Model

Statistics in Medicine(2025)10.1002/sim.70179

N/A

0DataRank · unranked

1 citations

Panpan Ren, Xingjie Shi, Shuangge Ma, Xu Liu, Xiao Zhang

GE-IA-NAM: gene–environment interaction analysis via imaging-assisted neural additive model

Bioinformatics(2025)10.1093/bioinformatics/btaf481

N/A

0DataRank · unranked

1 citations

Yaqing Xu, Shuangge Ma, Kuangnan Fang, Jingmao Li

Ordinal Sparse Neural Networks for Modeling Gene‐ and Imaging‐Environment Interactions

Statistics in Medicine(2025)10.1002/sim.70302

N/A

0DataRank · unranked

1 citations

Yaqing Xu, Jingmao Li, Shuangge Ma, Kuangnan Fang, Jiajing Xue

Hierarchical Multi‐Label Classification With Gene‐Environment Interactions in Disease Modeling

Statistics in Medicine(2025)10.1002/sim.10330

N/A

0DataRank · unranked

2 citations

Qingzhao Zhang, Shuangge Ma, Kuangnan Fang, Yaqing Xu, Jingmao Li

Bayesian Modeling of Cancer Outcomes Using Genetic Variables Assisted by Pathological Imaging Data

Statistics in Medicine(2025)10.1002/sim.10350

N/A

0DataRank · unranked

1 citations

Hongsong Li, Shuangge Ma, Yunju Im

Adiposity, Metabolomic and Proteomic Signatures, and Liver Health: A Prospective Cohort Study in the UK Biobank

Current Developments in Nutrition(2025)10.1016/j.cdnut.2025.107194

N/A

0DataRank · unranked

0 citations

Yun Chen, Jun Li, Tamar H. Taddei, Xiaomei Ma, Shuangge Ma +7 more

Joint modeling of mixed outcomes using a rank-based sparse neural network

Journal of Biomedical Informatics(2025)10.1016/j.jbi.2025.104870

N/A

0DataRank · unranked

0 citations

Yaqing Xu, Jingmao Li, Shuangge Ma, Kuangnan Fang, Jiajing Xue

Robust Transfer Learning for High‐Dimensional GLM Using γ$$ \gamma $$‐Divergence With Applications to Cancer Genomics

Statistics in Medicine(2025)10.1002/sim.70170

N/A

0DataRank · unranked

0 citations

Shuangge Ma, Qingzhao Zhang, Yaqing Xu, Feng Xu

Tests for regression coefficients in high dimensional partially linear models

Statistics & Probability Letters(2020)10.1016/j.spl.2020.108772

N/A

0DataRank · unranked

12 citations

Sanguo Zhang, Shuangge Ma, Qingzhao Zhang, Yan Liu

Hierarchical structure-guided high-dimensional multi-view clustering

Journal of Multivariate Analysis(2025)10.1016/j.jmva.2025.105488

N/A

0DataRank · unranked

0 citations

Kuangnan Fang, Shuangge Ma, Qingzhao Zhang, Jiajia Jiang

Histopathological imaging features- versus molecular measurements-based cancer prognosis modeling

Scientific Reports(2020)10.1038/s41598-020-72201-5

N/A

0DataRank · unranked

14 citations

Yu Fan, Tingyan Zhong, Shuangge Ma, Sanguo Zhang

Integrative functional linear model for genome-wide association studies with multiple traits

Biostatistics(2020)10.1093/biostatistics/kxaa043

N/A

0DataRank · unranked

13 citations

Fan Wang, Mengyun Wu, Shuangge Ma, Yang Li

Histopathological imaging‐based cancer heterogeneity analysis via penalized fusion with model averaging

Biometrics(2020)10.1111/biom.13357

N/A

0DataRank · unranked

18 citations

Tingyan Zhong, Jian Huang, Yanyan Liu, Qingzhao Zhang, Shuangge Ma +1 more

Kynurenic acid underlies sex-specific immune responses to COVID-19

medRxiv(2020)10.1101/2020.09.06.20189159

N/A

0DataRank · unranked

28 citations

Daniel Kim, Takehiro Takahashi, David Broadhurst, Shuangge Ma, Nicholas J. W. Rattray +15 more

Diverse functional autoantibodies in patients with COVID-19

Nature(2021)10.1038/s41586-021-03631-y

N/A

0DataRank · unranked

992 citations

Tianyang Mao, Jon Klein, Yile Dai, John D. Huck, Jillian R. Jaycox +87 more

Gaussian graphical model‐based heterogeneity analysis via penalized fusion

Biometrics(2021)10.1111/biom.13426

N/A

0DataRank · unranked

32 citations

Sanguo Zhang, Qingzhao Zhang, Shuangge Ma, Mingyang Ren

GEInter: an R package for robust gene–environment interaction analysis

Bioinformatics(2021)10.1093/bioinformatics/btab318

N/A

0DataRank · unranked

14 citations

Xing Qin, Shuangge Ma, Mengyun Wu

Hierarchical cancer heterogeneity analysis based on histopathological imaging features

Biometrics(2021)10.1111/biom.13544

N/A

0DataRank · unranked

9 citations

Qingzhao Zhang, Sanguo Zhang, Tingyan Zhong, Jian Huang, Shuangge Ma +1 more

Bayesian finite mixture of regression analysis for cancer based on histopathological imaging–environment interactions

Biostatistics(2021)10.1093/biostatistics/kxab038

N/A

0DataRank · unranked

8 citations

Yuan Huang, Aixin Tan, Shuangge Ma, Yunju Im

Gene‐gene interaction analysis incorporating network information via a structured Bayesian approach

Statistics in Medicine(2021)10.1002/sim.9202

N/A

0DataRank · unranked

7 citations

Shuangge Ma, Mengyun Wu, Xing Qin

Multidimensional molecular measurements–environment interaction analysis for disease outcomes

Biometrics(2021)10.1111/biom.13526

N/A

0DataRank · unranked

5 citations

Mengyun Wu, Shuangge Ma, Yaqing Xu

Heterogeneity Analysis via Integrating Multi-Sources High-Dimensional Data With Applications to Cancer Studies

Statistica Sinica(2021)10.5705/ss.202021.0002

N/A

0DataRank · unranked

4 citations

Qingzhao Zhang, Jian Huang, Mengyun Wu, Shuangge Ma, Tingyan Zhong

Integrative sparse partial least squares

Statistics in Medicine(2021)10.1002/sim.8900

N/A

0DataRank · unranked

6 citations

Shuangge Ma, Qingzhao Zhang, Tingyu Zhu, Weijuan Liang