Ram Samudrala

University at Buffalo, State University of New York

Computer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

9.2Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Genomes of Oryza sativa: A History of Duplications

PLoS Biology(2005)10.1371/journal.pbio.0030038

Top 2%

9.0DataRank

Top 2%1040 citations

Jun Wang, Wei Lin, Songgang Li, Jun Zhou, Peixiang Ni +115 more

Papers

Driven by 39 papers — median percentile 30. Top paper: “The Genomes of Oryza sativa: A History of Duplications”.

The Genomes of Oryza sativa: A History of Duplications

PLoS Biology(2005)10.1371/journal.pbio.0030038

Top 2%

9.0DataRank

Top 2%1040 citations

Jun Wang, Wei Lin, Songgang Li, Jun Zhou, Peixiang Ni +115 more

Protein Meta-Functional Signatures from Combining Sequence, Structure, Evolution, and Amino Acid Property Information

PLoS Computational Biology(2008)10.1371/journal.pcbi.1000181

N/A

1.7DataRank · unranked

40 citations

Jeremy A. Horst, Gong Cheng, David C. Nickle, Ram Samudrala, Kai Wang

CANDOCK: Chemical Atomic Network-Based Hierarchical Flexible Docking Algorithm Using Generalized Statistical Potentials

Journal of Chemical Information and Modeling(2020)10.1021/acs.jcim.9b00686

N/A

0.614DataRank · unranked

59 citations

Janez Konc, Ram Samudrala, Gaurav Chopra, Jonathan Fine

Identifying Protein Features and Pathways Responsible for Toxicity Using Machine Learning and Tox21: Implications for Predictive Toxicology

Molecules(2022)10.3390/molecules27093021

N/A

0.542DataRank · unranked

36 citations

William Mangione, Mira Moukheiber, Saeed Maleki, Zackary Falls, Mingchen Gao +2 more

Structure Prediction of Partial-Length Protein Sequences

International Journal of Molecular Sciences(2013)10.3390/ijms140714892

N/A

0.499DataRank · unranked

5 citations

Ling-Hong Hung, Ram Samudrala, Adrian Laurenzi

Heptad-Repeat-2 Mutations Enhance the Stability of the Enfuvirtide-Resistant HIV-1 gp41 Hairpin Structure

Antiviral Therapy(2005)10.1177/135965350501000804

N/A

0.425DataRank · unranked

16 citations

Ram Samudrala, Ekachai Jenwitheesuk

Proteomic Network Analysis of Bronchoalveolar Lavage Fluid in Ex-Smokers to Discover Implicated Protein Targets and Novel Drug Treatments for Chronic Obstructive Pulmonary Disease

Pharmaceuticals(2022)10.3390/ph15050566

N/A

0.416DataRank · unranked

15 citations

Chengjian Tu, Matthew Morris, Spencer Richman, William Mangione, Zackary Falls +5 more

Evolutionary Transients in the Rice Transcriptome

Genomics, Proteomics & Bioinformatics(2010)10.1016/s1672-0229(10)60023-x

N/A

0.397DataRank · unranked

10 citations

Jianguo Zhang, Alexandra P. Lewis, Hongkun Zheng, Jun Li, Yong Zhang +15 more

The implications of APOBEC3-mediated C-to-U RNA editing for human disease

Communications Biology(2024)10.1038/s42003-024-06239-w

N/A

0.360DataRank · unranked

10 citations

Zackary Falls, Sapan Mandloi, Brahm H. Segal, Bora E. Baysal, Ram Samudrala +2 more

The Role of C-to-U RNA Editing in Human Biodiversity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.31.550344

N/A

0.280DataRank · unranked

4 citations

Zackary Falls, Sapan Mandloi, Brahm H. Segal, Bora E. Baysal, Ram Samudrala +2 more

Effective holistic characterization of small molecule effects using heterogeneous biological networks

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.23.485550

Top 70%

0.165DataRank

Top 70%2 citations

Zackary Falls, Ram Samudrala, William Mangione

Association of C>U RNA Editing with Human Disease Variants

Studies in health technology and informatics(2020)10.3233/shti200364

N/A

0.104DataRank · unranked

1 citations

Zackary Falls, Deng Rong, Ram Samudrala, Peter L. Elkin, Sapan Mandloi

Protein mimetic amyloid inhibitor potently abrogates cancer-associated mutant p53 aggregation and restores tumor suppressor function

Nature Communications(2021)10.1038/s41467-021-23985-1

N/A

0DataRank · unranked

125 citations

Laura Karpauskaite, Mohamed Al‐Sayegh, Ibrahim Chehade, Maheen Alam, Sarah Hassan +16 more

Evaluating the performance of drug-repurposing technologies

Drug Discovery Today(2021)10.1016/j.drudis.2021.08.002

N/A

0DataRank · unranked

47 citations

Zackary Falls, William Mangione, Matthew L. Hudson, Liana Bruggemann, Ram Samudrala +1 more

A synthetic small molecule stalls pre-mRNA splicing by promoting an early-stage U2AF2-RNA complex

Cell chemical biology(2021)10.1016/j.chembiol.2021.02.007

N/A

0DataRank · unranked

39 citations

Callen F. Feeney, Mary J. Pulvino, Georgios Alachouzos, Andrew J. MacRae, Zackary Falls +10 more

A fluorescence-based, gain-of-signal, live cell system to evaluate SARS-CoV-2 main protease inhibition

Antiviral Research(2021)10.1016/j.antiviral.2021.105183

N/A

0DataRank · unranked

16 citations

George R. Smith, Uddhav Timilsina, Zackary Falls, Ram Samudrala, Spyridon Stavrou +2 more

Multiscale Virtual Screening Optimization for Shotgun Drug Repurposing Using the CANDO Platform

Molecules(2021)10.3390/molecules26092581

N/A

0DataRank · unranked

19 citations

Ram Samudrala, Matthew L. Hudson

A Deep-Learning Proteomic-Scale Approach for Drug Design

Pharmaceuticals(2021)10.3390/ph14121277

N/A

0DataRank · unranked

19 citations

Zackary Falls, William Mangione, Ram Samudrala, Brennan Overhoff

A Deep Learning Proteomic Scale Approach for Drug Design

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.05.463126

N/A

0DataRank · unranked

4 citations

Zackary Falls, William Mangione, Ram Samudrala, Brennan Overhoff

Identifying Protein Features and Pathways Responsible for Toxicity using Machine learning, CANDO, and Tox21 datasets: Implications for Predictive Toxicology

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.13.472455

N/A

0DataRank · unranked

2 citations

William Mangione, Saeed Maleki, Zackary Falls, Mingchen Gao, Ram Samudrala +1 more

cando.py: Open Source Software for Predictive Bioanalytics of Large Scale Drug–Protein–Disease Data

Journal of Chemical Information and Modeling(2020)10.1021/acs.jcim.0c00110

N/A

0DataRank · unranked

33 citations

Zackary Falls, Gaurav Chopra, Ram Samudrala, William Mangione

Optimal COVID-19 therapeutic candidate discovery using the CANDO platform

Frontiers in Pharmacology(2022)10.3389/fphar.2022.970494

N/A

0DataRank · unranked

12 citations

Zackary Falls, Ram Samudrala, William Mangione

Accurate Prediction of Inhibitor Binding to HIV-1 Protease Using CANDOCK

Frontiers in Chemistry(2022)10.3389/fchem.2021.775513

N/A

0DataRank · unranked

9 citations

Jonathan Fine, Gaurav Chopra, Ram Samudrala, Zackary Falls

Proteomic network analysis of bronchoalveolar lavage fluid in ex-smokers to discover implicated protein targets and novel drug treatments for chronic obstructive pulmonary disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.14.480388

N/A

0DataRank · unranked

5 citations

Chengjian Tu, Matthew Morris, Spencer Richman, William Mangione, Zackary Falls +5 more

Antiviral Approaches against Influenza Virus

Clinical Microbiology Reviews(2023)10.1128/cmr.00040-22

N/A

0DataRank · unranked

159 citations

Suresh D. Sharma, Amrita Kumar, Zachary Ende, Margarita Mishina, Yuanyuan Wang +6 more

The impact of nucleosome structure on CRISPR/Cas9 fidelity

Nucleic Acids Research(2023)10.1093/nar/gkad021

N/A

0DataRank · unranked

20 citations

Maria Tsompana, Ram Samudrala, Michael Buck, Christopher R. Handelmann

Multiscale Analysis and Validation of Effective Drug Combinations Targeting Driver KRAS Mutations in Non-Small Cell Lung Cancer

International Journal of Molecular Sciences(2023)10.3390/ijms24020997

N/A

0DataRank · unranked

10 citations

Zackary Falls, William Mangione, Stanley A. Schwartz, Sebastiano Battaglia, Ravikumar Aalinkeel +3 more

Effective holistic characterization of small molecule effects using heterogeneous biological networks

Frontiers in Pharmacology(2023)10.3389/fphar.2023.1113007

N/A

0DataRank · unranked

14 citations

Zackary Falls, Ram Samudrala, William Mangione

Computational Grafting of Epitopes

Methods in molecular biology(2023)10.1007/978-1-0716-3239-0_7

N/A

0DataRank · unranked

0 citations

Smriti Mishra, Monika Pahuja, Ayush Anand, Naidu Subbarao, Ram Samudrala +1 more

The Role of C-to-U RNA Editing in Human Biodiversity and Disease

Research Square(2023)10.21203/rs.3.rs-2521971/v1

N/A

0DataRank · unranked

0 citations

Melissa Van Norden, Zackary Falls, Sapan Mandloi, Brahm H. Segal, Bora E. Baysal +2 more

Accurate informatic modeling of tooth enamel pellicle interactions by training substitution matrices with Mat4Pep

Frontiers in Materials(2024)10.3389/fmats.2024.1436379

N/A

0DataRank · unranked

1 citations

Jong Seto, Ersin Emre Ören, Orapin V. Horst, Ling‐Hong Hung, Ram Samudrala +1 more

Strategies for Robust, Accurate, and Generalisable Benchmarking of Drug Discovery Platforms

Qeios(2024)10.32388/2ylbwo

N/A

0DataRank · unranked

0 citations

William Mangione, Zackary Falls, Ram Samudrala, Melissa Van Norden

Deciphering bisphenol A (BPA)-elicited osteoarthritis mechanisms through network toxicology and molecular docking, then de novo generation of novel therapeutic candidates

BMC Pharmacology and Toxicology(2025)10.1186/s40360-025-01069-w

N/A

0DataRank · unranked

2 citations

Liping Jiang, Zhuo Zhang, Xin Luo, Wu Wei, Huilan Wu +5 more

Strategies for robust, accurate, and generalizable benchmarking of drug discovery platforms

Bioinformatics(2025)10.1093/bioinformatics/btaf604

N/A

0DataRank · unranked

0 citations

William Mangione, Zackary Falls, Ram Samudrala, Melissa Van Norden

A synthetic small molecule stalls pre-mRNA splicing by promoting an early-stage U2AF2–RNA complex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.28.317727

N/A

0DataRank · unranked

4 citations

Callen F. Feeney, Mary J. Pulvino, Georgios Alachouzos, Andrew J. MacRae, Zackary Falls +10 more

Shotgun drug repurposing biotechnology to tackle epidemics and pandemics

Drug Discovery Today(2020)10.1016/j.drudis.2020.05.002

N/A

0DataRank · unranked

33 citations

Zackary Falls, Thomas Melendy, Gaurav Chopra, Ram Samudrala, William Mangione

Rv0100, a proposed acyl carrier protein in Mycobacterium tuberculosis: expression, purification and crystallization. Corrigendum

Acta Crystallographica Section F Structural Biology Communications(2020)10.1107/s2053230x2000271x

N/A

0DataRank · unranked

2 citations

Hiten J. Gutka, Mashal M. Almutairi, Ryan Patwell, Maxwell W. Rutter, Nina M. Wolf +6 more

Multiscale virtual screening optimization for shotgun drug repurposing using the CANDO platform

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.24.265488

N/A

0DataRank · unranked

2 citations

Ram Samudrala, Matthew L. Hudson

Linking Genome and Exposome: Computational Analysis of Human Variation in Chemical-Target Interactions

Studies in health technology and informatics(2020)10.3233/shti200427

Top 100%

0DataRank

Top 100%0 citations

Christopher Hawthorne, Ram Samudrala, Guillermo López–Campos, Liana Bruggemann

Ram Samudrala

Indexed papers

Top data-sharing exemplar

Papers