🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Douglas P. Shepherd

Arizona State University

ORCID: 0000-0001-9087-0832
Biochemistry, Genetics and Molecular BiologyEngineeringPhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
7.9Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An integrated cell atlas of the lung in health and disease

Nature Medicine(2023)10.1038/s41591-023-02327-2
Top 4%
5.0DataRank
Top 4%781 citations

Ciro Ramírez-Suástegui, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov +87 more

Papers

Driven by 23 papers — median percentile 92. Top paper: “An integrated cell atlas of the lung in health and disease”.

An integrated cell atlas of the lung in health and disease

Nature Medicine(2023)10.1038/s41591-023-02327-2
Top 4%
5.0DataRank
Top 4%781 citations

Ciro Ramírez-Suástegui, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov +87 more

An integrated cell atlas of the human lung in health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.10.483747
Top 8%
2.8DataRank
Top 8%97 citations

Daniel Strobl, Luke Zappia, Nikolay S. Markov, Laure-Emmanuelle Zaragosi, Marie-Jeanne Arguel +77 more

Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity

Nature Communications(2021)10.1038/s41467-021-24467-0
N/A
2.0DataRank · unranked
43 citations

Nichelle I. Winters, Mei-i Chung, Chitra Joseph, Austin J. Gutierrez, Arun C. Habermann +67 more

Miniature structured illumination microscope for in vivo 3D imaging of brain structures with optical sectioning

Biomedical Optics Express(2022)10.1364/boe.449533
N/A
1.5DataRank · unranked
47 citations

Andrew Sias, Sean R. Hansen, Gabriel Martinez, Graham C. Peet, Xiaoyu Peng +8 more

Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19

Immunity(2020)10.1016/j.immuni.2020.11.017
N/A
0.901DataRank · unranked
405 citations

Neha Mishra, Florian Tran, Thomas Bahmer, Lena Best, Johanna I. Blase +169 more

A Versatile Oblique Plane Microscope for Large-Scale and High-Resolution Imaging of Subcellular Dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.07.030569
N/A
0.406DataRank · unranked
14 citations

Bo-Jui Chang, Jaewon Huh, Robert J. Ju, Evgenia V Azarova, Theresa Pohlkamp +20 more

An integrated cell atlas of the human lung in health and disease

Research Square(2022)10.21203/rs.3.rs-1438584/v1
Top 71%
0.127DataRank
Top 71%1 citations

Avi Srivastava, Daniel Strobl, Luke Zappia, Elo Madissoon, Nikolay S. Markov +80 more

Inferring gene expression models from snapshot RNA data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.28.493734
N/A
0DataRank · unranked
2 citations

Zeliha Kilic, Max Schweiger, Douglas P. Shepherd, Steve Pressé, Camille Moyer

A computational proposal for tracking multiple molecules in a multi-focus confocal setup

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.17.492362
N/A
0DataRank · unranked
0 citations

Lance W.Q. Xu, Ioannis Sgouralis, Douglas P. Shepherd, Steve Pressé, Sina Jazani

Gene expression model inference from snapshot RNA data using Bayesian non-parametrics

Nature Computational Science(2023)10.1038/s43588-022-00392-0
N/A
0DataRank · unranked
34 citations

Max Schweiger, Camille Moyer, Douglas P. Shepherd, Steve Pressé, Zeliha Kilic

Decoding the hydrodynamic properties of microscale helical propellers from Brownian fluctuations

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2220033120
N/A
0DataRank · unranked
5 citations

Peter Brown, Bonfilio Nainggolan, Alexis Coullomb, Sritharini Radhakrishnan, Jason Sentosa +4 more

Approaching Maximum Resolution in Structured Illumination Microscopy via Accurate Noise Modeling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.07.570701
N/A
0DataRank · unranked
0 citations

Peter Brown, J. Shepard Bryan, Zachary Fox, Rory Kruithoff, Cristopher Thompson +4 more

Navigate: an open-source platform for smart light-sheet microscopy

Nature Methods(2024)10.1038/s41592-024-02413-4
N/A
0DataRank · unranked
31 citations

Xiaoding Wang, D. Collison, Conor H. McFadden, Jinlong Lin, Hazel M Borges +13 more

Re-thinking Richardson-Lucy without Iteration Cutoffs: Physically Motivated Bayesian Deconvolution

arXiv (Cornell University)(2024)10.48550/arxiv.2411.00991
N/A
0DataRank · unranked
0 citations

Peter Brown, Tim Flanagan, Douglas P. Shepherd, Ayush Saurabh, Steve Pressé +1 more

Approaching maximum resolution in structured illumination microscopy via accurate noise modeling

npj Imaging(2025)10.1038/s44303-024-00066-8
N/A
0DataRank · unranked
9 citations

Peter Brown, J. Shepard Bryan, Zachary Fox, Rory Kruithoff, Cristopher Thompson +4 more

Mamba time series forecasting with uncertainty quantification

Machine Learning Science and Technology(2025)10.1088/2632-2153/adec3b
N/A
0DataRank · unranked
6 citations

Paul Campitelli, Douglas P. Shepherd, S. Banu Ozkan, Steve Pressé, Pedro Pessoa

GPU-accelerated, self-optimizing processing for 3D multiplexed iterative RNA-FISH experiments

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.10.681751
N/A
0DataRank · unranked
0 citations

Mauri D. Spendlove, Steven J. Sheppard, Max Schweiger, Pedro Pessoa, Mohammad Ali Abbasi +4 more

A versatile oblique plane microscope for large-scale and high-resolution imaging of subcellular dynamics

eLife(2020)10.7554/elife.57681
N/A
0DataRank · unranked
206 citations

Bo-Jui Chang, Jaewon Huh, Robert J. Ju, Evgenia V Azarova, Theresa Pohlkamp +20 more

rhIGF-1/BP3 Preserves Lung Growth and Prevents Pulmonary Hypertension in Experimental Bronchopulmonary Dysplasia

American Journal of Respiratory and Critical Care Medicine(2020)10.1164/rccm.201910-1975oc
N/A
0DataRank · unranked
65 citations

Christina Kim, Bradley Wallace, Erica W. Mandell, Taylor Nowlin, Douglas P. Shepherd +2 more

Multicolor structured illumination microscopy and quantitative control of polychromatic coherent light with a digital micromirror device

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.27.223941
N/A
0DataRank · unranked
4 citations

Rory Kruithoff, Gregory Seedorf, Douglas P. Shepherd, Peter Brown

Pycro-Manager: open-source software for customized and reproducible microscope control

Nature Methods(2021)10.1038/s41592-021-01087-6
N/A
0DataRank · unranked
124 citations

Nico Stuurman, Ivan E. Ivanov, Nicholas M. Anthony, Wei Ouyang, Bin Li +18 more

Tutorial: practical considerations for tissue clearing and imaging

Nature Protocols(2021)10.1038/s41596-021-00502-8
N/A
0DataRank · unranked
108 citations

Fabian F. Voigt, Douglas P. Shepherd, Jan Huisken, Kurt Weiss

Resolution doubling in light-sheet microscopy via oblique plane structured illumination

Nature Methods(2022)10.1038/s41592-022-01635-8
N/A
0DataRank · unranked
74 citations

Bo-Jui Chang, Philippe Roudot, Felix Y. Zhou, Etai Sapoznik, Madeleine Marlar-Pavey +11 more