Tommaso Biancalani

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

12.1Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A multimodal cell census and atlas of the mammalian primary motor cortex

Nature(2021)10.1038/s41586-021-03950-0

Top 5%

4.3DataRank

Top 5%574 citations

BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Edward M. Callaway, Joseph R. Ecker, Z. Josh Huang, Ed S. Lein +252 more

Papers

Driven by 26 papers — median percentile 92. Top paper: “Toward a Common Coordinate Framework for the Human Body”.

Toward a Common Coordinate Framework for the Human Body

Cell(2019)10.1016/j.cell.2019.11.019

N/A

5.1DataRank · unranked

134 citations

Tim Stuart, Shila Ghazanfar, Tommaso Biancalani, Eyal Fisher, Andrew Butler +8 more

A multimodal cell census and atlas of the mammalian primary motor cortex

Nature(2021)10.1038/s41586-021-03950-0

Top 5%

4.3DataRank

Top 5%574 citations

BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Edward M. Callaway, Joseph R. Ecker, Z. Josh Huang, Ed S. Lein +252 more

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03500-8

Top 5%

4.2DataRank

Top 5%389 citations

Julie A. Harris, Fangming Xie, Stephan Fischer, Ricky S. Adkins, Andrew I. Aldridge +81 more

A cell atlas foundation model for scalable search of similar human cells

Nature(2024)10.1038/s41586-024-08411-y

N/A

2.1DataRank · unranked

114 citations

Tony Kuo, Daryle J. DePianto, Omar Salem, Tobias Heigl, Nathaniel Diamant +9 more

Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity

Nature Communications(2021)10.1038/s41467-021-24467-0

N/A

2.0DataRank · unranked

43 citations

Nichelle I. Winters, Mei-i Chung, Chitra Joseph, Austin J. Gutierrez, Arun C. Habermann +67 more

Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.29.272831

Top 11%

1.9DataRank

Top 11%36 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +15 more

Stepwise-edited, human melanoma models reveal mutations’ effect on tumor and microenvironment

Science(2022)10.1126/science.abi8175

N/A

1.8DataRank · unranked

70 citations

Elena Torlai Triglia, John Y. H. Kwon, Tommaso Biancalani, Labib R. Zakka, Saurabh Parkar +16 more

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.29.970558

Top 13%

1.6DataRank

Top 13%63 citations

Julie A. Harris, Fangming Xie, Stephan Fischer, A. Sina Booeshaghi, Ricky S. Adkins +78 more

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

Nature Methods(2021)10.1038/s41592-021-01264-7

N/A

1.0DataRank · unranked

856 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +17 more

Molecular logic of cellular diversification in the mouse cerebral cortex

Nature(2021)10.1038/s41586-021-03670-5

N/A

0.925DataRank · unranked

475 citations

Ehsan Habibi, Robert R. Stickels, Gabriele Scalia, Juliana Brown, Payman Yadollahpour +8 more

Raman2RNA: Live-cell label-free prediction of single-cell RNA expression profiles by Raman microscopy

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.30.470655

N/A

0.911DataRank · unranked

18 citations

Shreya Gaddam, Taylor James-Sorenson, Emanuelle Grody, Johain R. Ounadjela, Baoliang Ge +10 more

Resource Availability Modulates the Cooperative and Competitive Nature of a Microbial Cross-Feeding Mutualism

PLOS Biology(2016)10.1371/journal.pbio.1002540

N/A

0.863DataRank · unranked

315 citations

Kevin Axelrod, Tommaso Biancalani, Eugene A. Yurtsev, Jinghui Liu, Jeff Gore +1 more

Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states

Nature Genetics(2021)10.1038/s41588-021-00927-7

N/A

0.824DataRank · unranked

242 citations

Federico Gaiti, Dana Silverbush, Joshua S. Schiffman, Hannah R. Weisman, Lloyd Kluegel +18 more

Genetic vulnerability to Crohn’s disease reveals a spatially resolved epithelial restitution program

Science Translational Medicine(2023)10.1126/scitranslmed.adg5252

N/A

0.507DataRank · unranked

13 citations

Chenhao Li, Toufic Mayassi, Helen Lin, Koushik Ghosh, Åsa Segerstolpe +14 more

Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain

Scientific Reports(2023)10.1038/s41598-023-36638-8

N/A

0.457DataRank · unranked

20 citations

Jeremy A. Miller, Jeongbin Park, Boudewijn P. F. Lelieveldt, Brian Long, Tamim Abdelaal +13 more

Gene-embedding-based prediction and functional evaluation of perturbation expression responses with PRESAGE

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.03.657653

N/A

0.405DataRank · unranked

6 citations

Jacob Levine, Sepideh Maleki, Yong‐Ju Lee, Vladimir Ermakov, Lin Qiu +10 more

A high-throughput phenotypic screen combined with an ultra-large-scale deep learning-based virtual screening reveals novel scaffolds of antibacterial compounds

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.11.612340

N/A

0.324DataRank · unranked

5 citations

Steven T. Rutherford, Ziqing Lu, Kerry R. Buchholz, Nicholas J. Skelton, Kangway V. Chuang +16 more

Deep-learning-based virtual screening of antibacterial compounds

Nature Biotechnology(2025)10.1038/s41587-025-02814-6

N/A

0.300DataRank · unranked

4 citations

Steven T. Rutherford, Ziqing Lu, Kerry R. Buchholz, Nathaniel Diamant, Jan-Christian Hütter +16 more

Polygraph: A Software Framework for the Systematic Assessment of Synthetic Regulatory DNA Elements

10.1101/2023.11.27.568764

N/A

0.241DataRank · unranked

4 citations

Laura M. Gunsalus, Anay Gupta, Tommaso Biancalani, Gökçen Eraslan, Avantika Lal

Joint Embedding vs Reconstruction: Provable Benefits of Latent Space Prediction for Self Supervised Learning

arXiv (Cornell University)(2025)10.48550/arxiv.2505.12477

N/A

0.226DataRank · unranked

3 citations

Mark Ibrahim, Tommaso Biancalani, Prisca Liberali, Randall Balestriero, Hugues Van Assel

Derivative-Free Guidance in Continuous and Discrete Diffusion Models with Soft Value-Based Decoding

arXiv (Cornell University)(2024)10.48550/arxiv.2408.08252

N/A

0.182DataRank · unranked

2 citations

Yulai Zhao, Chenyu Wang, Gabriele Scalia, Gökçen Eraslan, Surag Nair +6 more

Author Correction: Molecular logic of cellular diversification in the mouse cerebral cortex

Nature(2021)10.1038/s41586-021-03797-5

N/A

0.152DataRank · unranked

1 citations

Ehsan Habibi, Robert R. Stickels, Gabriele Scalia, Juliana Brown, Payman Yadollahpour +8 more

Publisher Correction: Deep-learning-based virtual screening of antibacterial compounds

Nature Biotechnology(2025)10.1038/s41587-025-02941-0

N/A

0DataRank · unranked

0 citations

Steven T. Rutherford, Ziqing Lu, Kerry R. Buchholz, Nathaniel Diamant, Jan-Christian Hütter +16 more

Inference-Time Alignment in Diffusion Models with Reward-Guided Generation: Tutorial and Review

arXiv (Cornell University)(2025)10.48550/arxiv.2501.09685

N/A

0DataRank · unranked

0 citations

Yulai Zhao, Chenyu Wang, Xiner Li, Prisca Liberali, Sergey Levine +2 more

Reward-Guided Iterative Refinement in Diffusion Models at Test-Time with Applications to Protein and DNA Design

arXiv (Cornell University)(2025)10.48550/arxiv.2502.14944

N/A

0DataRank · unranked

0 citations

Xingyu Su, Yulai Zhao, Xiner Li, Prisca Liberali, Shuiwang Ji +3 more

Dynamic Search for Inference-Time Alignment in Diffusion Models

arXiv (Cornell University)(2025)10.48550/arxiv.2503.02039

N/A

0DataRank · unranked

0 citations

Masatoshi Uehara, Xingyu Su, Gabriele Scalia, Tommaso Biancalani, Prisca Liberali +3 more

Tommaso Biancalani

Indexed papers

Top data-sharing exemplar

Papers