Olga Dudchenko

Center for Theoretical Biological Physics

Also affiliated with Baylor Genetics, The University of Texas Medical Branch at Galveston

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

13.4Author DataRank

Indexed papers

23in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 23 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The ENCODE Uniform Analysis Pipelines

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.04.535623

Top 11%

2.0DataRank

Top 11%102 citations

Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud +55 more

Papers

Driven by 48 papers — median percentile 59. Top paper: “The ENCODE Uniform Analysis Pipelines”.

The ENCODE Uniform Analysis Pipelines

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.04.535623

Top 11%

2.0DataRank

Top 11%102 citations

Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud +55 more

Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C

GigaScience(2020)10.1093/gigascience/giaa027

Top 11%

1.8DataRank

Top 11%70 citations

Benjamin D. Rosen, Olga Dudchenko, Eva K.F. Chan, André E. Minoche, Richard J. Edwards +15 more

Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement

Journal of Advanced Research(2021)10.1016/j.jare.2021.10.009

Top 16%

1.3DataRank

Top 16%71 citations

Olga Dudchenko, Jinpeng Wang, Aamir W. Khan, Saurabh Gupta, Parwinder Kaur +41 more

Fine-mapping of nuclear compartments using ultra-deep Hi-C shows that active promoter and enhancer elements localize in the active A compartment even when adjacent sequences do not

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.03.462599

N/A

1.1DataRank · unranked

29 citations

Hannah L. Harris, Moshe Olshansky, Yossi Eliaz, Akshay Krishna, Achyuth Kalluchi +20 more

Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample

Cell(2024)10.1016/j.cell.2024.06.002

N/A

0.858DataRank · unranked

45 citations

Olga Dudchenko, Juan Antonio Rodríguez, Cynthia Pérez Estrada, Marianne Dehasque, Claudia Fontsere +51 more

Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater

GigaScience(2022)10.1093/gigascience/giac025

Top 25%

0.814DataRank

Top 25%29 citations

Han Ming Gan, Parwinder Kaur, Olga Dudchenko, David Weisz, Ruqayya Khan +9 more

A pan‐genome and chromosome‐length reference genome of narrow‐leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits

The Plant Journal(2022)10.1111/tpj.15885

Top 26%

0.778DataRank

Top 26%34 citations

Lars G. Kamphuis, Philipp E. Bayer, Parwinder Kaur, Olga Dudchenko, Candy M. Taylor +7 more

Chromatin alternates between A and B compartments at kilobase scale for subgenic organization

Nature Communications(2023)10.1038/s41467-023-38429-1

N/A

0.759DataRank · unranked

157 citations

Huiya Gu, Moshe Olshansky, Ailun Wang, Irene Farabella, Yossi Eliaz +25 more

Limited Evidence for Parallel Evolution Among Desert-AdaptedPeromyscusDeer Mice

Journal of Heredity(2021)10.1093/jhered/esab009

Top 28%

0.710DataRank

Top 28%30 citations

Anna Tigano, Olga Dudchenko, Arina D. Omer, Ruqayya Khan, Ivan D. Bochkov +3 more

A chromosome-length genome assembly and annotation of blackberry ( Rubus argutus , cv. “Hillquist”)

G3 Genes Genomes Genetics(2022)10.1093/g3journal/jkac289

Top 30%

0.674DataRank

Top 30%31 citations

Rishi Aryal, Olga Dudchenko, Daniel James Sargent, Daniel G. Mead, Matteo Buti +21 more

The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758

Wellcome Open Research(2020)10.12688/wellcomeopenres.15722.1

Top 35%

0.562DataRank

Top 35%18 citations

Frank Hailer, Elizabeth A. Chadwick, Roberto Portela Miguez, Michelle Smith, Craig Corton +17 more

The ENCODE Uniform Analysis Pipelines

Research Square(2023)10.21203/rs.3.rs-3111932/v1

N/A

0.553DataRank · unranked

39 citations

Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud +57 more

A Chromosome-length Assembly of the Black Petaltail ( Tanypteryx hageni ) Dragonfly

Genome Biology and Evolution(2023)10.1093/gbe/evad024

Top 35%

0.550DataRank

Top 35%19 citations

Christopher D. Beatty, Jonas Bush, Manpreet K. Kohli, Carlos M. Moreno, Jessica L. Ware +8 more

The swan genome and transcriptome, it is not all black and white

Genome biology(2023)10.1186/s13059-022-02838-0

N/A

0.515DataRank · unranked

30 citations

Yuanyuan Cheng, Keng Yih Chew, Arjun Challagulla, R.H. Kraus, Ralf Mueller +40 more

Chromosome-Level Genome Assembly and Annotation of a Periodical Cicada Species: Magicicada septendecula

Genome Biology and Evolution(2024)10.1093/gbe/evae001

Top 38%

0.498DataRank

Top 38%5 citations

Cynthia Webster, Jill Wegrzyn, Chris Simon, Edward R. Wilcox, Ruqayya Khan +5 more

The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology

GigaScience(2023)10.1093/gigascience/giad018

Top 40%

0.479DataRank

Top 40%12 citations

Matthew A. Field, Richard J. Edwards, Laura A. B. Wilson, Loukas Koungoulos, Benjamin D. Rosen +11 more

The Sensory Shark: High-quality Morphological, Genomic and Transcriptomic Data for the Small-spotted Catshark Scyliorhinus Canicula Reveal the Molecular Bases of Sensory Organ Evolution in Jawed Vertebrates

Molecular Biology and Evolution(2024)10.1093/molbev/msae246

Top 41%

0.458DataRank

Top 41%13 citations

Jake Leyhr, John F. Mulley, Nicolas Leurs, Léo Michel, Kanika Sharma +32 more

The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758

Wellcome Open Research(2020)10.12688/wellcomeopenres.15679.1

Top 43%

0.441DataRank

Top 43%10 citations

Kathryn Fingland, Rachel Cripps, Roberto Portela Miguez, Michelle Smith, Craig Corton +20 more

De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome

Gigabyte(2021)10.46471/gigabyte.34

Top 44%

0.426DataRank

Top 44%8 citations

Adam Taylor, Tabitha A. Hughes, Brock R. McMillan, Randy T. Larsen, Ruqayya Khan +6 more

Balanced chromosomal rearrangements offer insights into coding and noncoding genomic features associated with developmental disorders

medRxiv(2022)10.1101/2022.02.15.22270795

N/A

0.373DataRank · unranked

11 citations

Mana M. Mehrjouy, Ryan L. Collins, Mads Bak, Olga Dudchenko, Harrison Brand +95 more

Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes)

Journal of Heredity(2023)10.1093/jhered/esad035

N/A

0.360DataRank · unranked

10 citations

Marlys L. Houck, Polina L. Perelman, Azamat Totikov, Andrey Tomarovsky, Olga Dudchenko +16 more

Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity

Chromosome Research(2023)10.1007/s10577-023-09722-y

Top 55%

0.301DataRank

Top 55%5 citations

Klaus‐Peter Koepfli, Taylor Hains, Ruqayya Khan, S.J. Charter, Julie A. Fronczek +28 more

The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.26.525801

Top 57%

0.276DataRank

Top 57%3 citations

Matthew A. Field, Richard J. Edwards, Laura A. B. Wilson, Loukas Koungoulos, Benjamin D. Rosen +11 more

The sensory shark: high-quality morphological, genomic and transcriptomic data for the small-spotted catshark Scyliorhinus canicula reveal the molecular bases of sensory organ evolution in jawed vertebrates

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.23.595469

Top 59%

0.261DataRank

Top 59%4 citations

Jake Leyhr, John F. Mulley, Nicolas Leurs, Laurent Michel, Kanika Sharma +32 more

Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.01.478655

N/A

0.241DataRank · unranked

4 citations

Olga Dudchenko, Erez Lieberman Aiden, Peter G. Wolynes, José N. Onuchic, Michele Di Pierro +1 more

A chromosome-length genome assembly and annotation of blackberry ( Rubus argutus , cv. ‘Hillquist’)

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.28.489789

Top 62%

0.222DataRank

Top 62%3 citations

Rishi Aryal, Olga Dudchenko, Daniel James Sargent, Daniel G. Mead, Matteo Buti +21 more

Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.30.547175

Top 65%

0.208DataRank

Top 65%3 citations

Olga Dudchenko, Juan Antonio Rodríguez, Cynthia Pérez Estrada, Marianne Dehasque, Claudia Fontsere +27 more

Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

Research Square(2020)10.21203/rs.3.rs-135125/v1

Top 65%

0.208DataRank

Top 65%3 citations

Matthew A. Field, James M. Ferguson, Olga Dudchenko, Jens Keilwagen, Benjamin D. Rosen +14 more

The genome of the Australian water dragon (Intellagama lesueurii), an agamid model for urban adaptation

Journal of Heredity(2024)10.1093/jhered/esae054

Top 66%

0.184DataRank

Top 66%2 citations

Nicola Jackson, Parwinder Kaur, Olga Dudchenko, Erez Lieberman Aiden, Arthur Georges +2 more

Desert Dingo ( Canis lupus dingo ) genome provides insights into their role in the Australian ecosystem

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.15.384057

Top 70%

0.165DataRank

Top 70%2 citations

Olga Dudchenko, Meera Esvaran, Benjamin D. Rosen, Matthew A. Field, Ksenia Skvortsova +21 more

Convergent selection on hormone signaling shaped social evolution in bees

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.14.439731

N/A

0.165DataRank · unranked

2 citations

Benjamin E. R. Rubin, Olga Dudchenko, Callum J. Kingwell, Ian M. Traniello, Z. Yan Wang +24 more

The swan genome and transcriptome: its not all black and white

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.02.490350

N/A

0.104DataRank · unranked

1 citations

Yuanyuan Cheng, Keng Yih Chew, Arjun Challgula, R.H. Kraus, Ralf Mueller +41 more

Chromosome-length genome assembly and structural variations of the primal Basenji dog ( Canis lupus familiaris ) genome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.11.379073

Top 78%

0.104DataRank

Top 78%1 citations

Matthew A. Field, James M. Ferguson, Olga Dudchenko, Jens Keilwagen, Benjamin D. Rosen +14 more

Chromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation

PLoS Pathogens(2022)10.1371/journal.ppat.1010288

N/A

0DataRank · unranked

38 citations

Pasi K. Korhonen, V. Vern Lee, Stuart A. Ralph, Margaret Mentink‐Kane, Hong You +16 more

De novo chromosome-length assembly of the mule deer ( Odocoileus hemionus ) genome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.12.456132

N/A

0DataRank · unranked

2 citations

Adam Taylor, Tabitha A. Hughes, Brock R. McMillan, Randy T. Larsen, Ruqayya Khan +5 more

Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly

International Journal of Molecular Sciences(2021)10.3390/ijms22094326

N/A

0DataRank · unranked

29 citations

Christopher Lui, Olga Dudchenko, Raja Sekhar Nandety, Bhavna Hurgobin, Melanie Pham +4 more

3D genomics across the tree of life reveals condensin II as a determinant of architecture type

Science(2021)10.1126/science.abe2218

N/A

0DataRank · unranked

302 citations

Olga Dudchenko, Ahmed M.O. Elbatsh, Sumitabha Brahmachari, Jonne A. Raaijmakers, Tom van Schaik +59 more

Improved high quality sand fly assemblies enabled by ultra low input long read sequencing

Scientific Data(2024)10.1038/s41597-024-03628-y

N/A

0DataRank · unranked

8 citations

Sarah B. Kingan, Douglas A. Shoue, Oanh Nguyen, Lutz Froenicke, Brendan D. Galvin +12 more

Chromosomal‐level genome assembly of the scimitar‐horned oryx: Insights into diversity and demography of a species extinct in the wild

Molecular Ecology Resources(2020)10.1111/1755-0998.13181

N/A

0DataRank · unranked

38 citations

Pavel Dobrynin, Helen Senn, Justin Chuven, Alan F. Scott, David W. Mohr +12 more

The control of prickle formation in Rubus

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.22.695586

N/A

0DataRank · unranked

2 citations

Tom Poorten, Andrew S. Fister, Cherie Ochsenfeld, Joel Reiner, Allie Sandra Castillo +23 more

A chromosome-length assembly of the Hawaiian Monk seal ( Neomonarchus schauinslandi ) confirms genomic stability in the Pinnipeds and a prolonged history of “genetic purging”

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.31.486393

N/A

0DataRank · unranked

0 citations

Stephen J. Gaughran, Justin Paschall, Ahmed Naguib, Andy Wing Chun Pang, Olga Dudchenko +4 more

Chromosome‐Level Genomics and Historical Museum Collections Reveal New Insights Into the Population Structure and Chromosome Evolution of Waterbuck

Molecular Ecology(2025)10.1111/mec.70218

N/A

0DataRank · unranked

0 citations

X. Wang, Carla Canedo‐Ribeiro, Lucía Álvarez‐González, David Weisz, Alexandria Mena +8 more

Convergent and complementary selection shaped gains and losses of eusociality in sweat bees

Nature Ecology & Evolution(2023)10.1038/s41559-023-02001-3

N/A

0DataRank · unranked

52 citations

Benjamin E. R. Rubin, Olga Dudchenko, Callum J. Kingwell, Ian M. Traniello, Z. Yan Wang +24 more

The gene-rich genome of the scallop Pecten maximus

GigaScience(2020)10.1093/gigascience/giaa037

N/A

0DataRank · unranked

85 citations

Shane A McCarthy, Olga Dudchenko, Katherine James, Emma Betteridge, Craig Corton +16 more

Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues

Nature Communications(2023)10.1038/s41467-023-35909-2

N/A

0DataRank · unranked

29 citations

Olga Dudchenko, Erez Lieberman Aiden, Peter G. Wolynes, José N. Onuchic, Michele Di Pierro +1 more

Genomic signatures of barley breeding for environmental adaptation to the new continents

Plant Biotechnology Journal(2023)10.1111/pbi.14077

N/A

0DataRank · unranked

23 citations

Penghao Wang, Tefera Tolera Angessa, Xiaoqi Zhang, K. J. Chalmers, Gaofeng Zhou +21 more

A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population

Genome Biology and Evolution(2022)10.1093/gbe/evac122

N/A

0DataRank · unranked

17 citations

Olga Dudchenko, Caitlin Curry, Marisa L. Korody, Sheela P. Turbek, Mark J. Daly +11 more

Transcriptional and functional consequences of alterations to MEF2C and its topological organization in neuronal models

The American Journal of Human Genetics(2022)10.1016/j.ajhg.2022.09.015

N/A

0DataRank · unranked

30 citations

Rachita Yadav, Eva D’haene, Philip M. Boone, Serkan Erdin, Dadi Gao +18 more

Olga Dudchenko

Indexed papers

Top data-sharing exemplar

Papers