🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jennifer Lu

Johns Hopkins University

ORCID: 0000-0001-9167-2002

Also affiliated with Johns Hopkins Medicine

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceSocial Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.469Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Comprehensive analysis of microbial content in whole-genome sequencing samples from The Cancer Genome Atlas project

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.24.595788

Top 41%

0.469DataRank

Top 41%9 citations

Jennifer Lu, Daniela Puiu, Mahler Revsine, Steven L. Salzberg, Yuchen Ge

Papers

Driven by 14 papers — median percentile 59. Top paper: “Improved metagenomic analysis with Kraken 2”.

Improved metagenomic analysis with Kraken 2

Genome Biology(2019)10.1186/s13059-019-1891-0

N/A

1.3DataRank · unranked

6841 citations

Jennifer Lu, Ben Langmead, Derrick E. Wood

Bracken: estimating species abundance in metagenomics data

PeerJ Computer Science(2017)10.7717/peerj-cs.104

N/A

1.2DataRank · unranked

2213 citations

Florian P. Breitwieser, Peter Thielen, Steven L. Salzberg, Jennifer Lu

Comprehensive analysis of microbial content in whole-genome sequencing samples from The Cancer Genome Atlas project

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.24.595788

Top 41%

0.469DataRank

Top 41%9 citations

Jennifer Lu, Daniela Puiu, Mahler Revsine, Steven L. Salzberg, Yuchen Ge

Novel metagenomics analysis of stony coral tissue loss disease

G3 Genes Genomes Genetics(2024)10.1093/g3journal/jkae137

N/A

0.392DataRank · unranked

8 citations

Jennifer Lu, Lindsay K. Huebner, Steven L. Salzberg, Markus Sommer, Stephanie Rosales +1 more

SkewIT: Skew Index Test for detecting mis-assembled bacterial genomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.27.968214

N/A

0DataRank · unranked

0 citations

Steven L. Salzberg, Jennifer Lu

Major data analysis errors invalidate cancer microbiome findings

mBio(2023)10.1128/mbio.01607-23

N/A

0DataRank · unranked

205 citations

Yuchen Ge, Jennifer Lu, Daniela Puiu, Amanda Xu, Colin S. Cooper +4 more

Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like blaKPC bearing plasmids

JAC-Antimicrobial Resistance(2023)10.1093/jacamr/dlad061

N/A

0DataRank · unranked

4 citations

Yehudit Bergman, Yunfan Fan, Emily Jacobs, Srividya Ramakrishnan, Jennifer Lu +7 more

Major data analysis errors invalidate cancer microbiome findings

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.28.550993

N/A

0DataRank · unranked

38 citations

Yuchen Ge, Jennifer Lu, Daniela Puiu, Amanda Xu, Colin S. Cooper +4 more

Metagenomic next generation sequencing of plasma RNA for diagnosis of unexplained, acute febrile illness in Uganda

PLoS neglected tropical diseases(2024)10.1371/journal.pntd.0012451

N/A

0DataRank · unranked

5 citations

Paul W. Blair, Jennifer Lu, Raghavendran Anantharam, Kenneth Kobba, Matthew L. Robinson +9 more

Novel metagenomics analysis of stony coral tissue loss disease

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.02.573916

N/A

0DataRank · unranked

3 citations

Jennifer Lu, Lindsay K. Huebner, Steven L. Salzberg, Markus J. Sommer, Stephanie Rosales +1 more

Molecular epidemiology of β-lactamases in ceftriaxone-resistant Enterobacterales bloodstream infections in the mid-Atlantic United States

Antimicrobial Agents and Chemotherapy(2025)10.1128/aac.01258-24

N/A

0DataRank · unranked

9 citations

Yehudit Bergman, Emily Jacobs, Jennifer Lu, Nancy D. Hanson, Rick Conzemius +5 more

Ultrafast and accurate 16S rRNA microbial community analysis using Kraken 2

Microbiome(2020)10.1186/s40168-020-00900-2

N/A

0DataRank · unranked

328 citations

Steven L. Salzberg, Jennifer Lu

SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008439

N/A

0DataRank · unranked

78 citations

Steven L. Salzberg, Jennifer Lu

Ultrafast and accurate 16S microbial community analysis using Kraken 2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.27.012047

N/A

0DataRank · unranked

11 citations

Steven L. Salzberg, Jennifer Lu