🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

John Urban

Howard Hughes Medical Institute

ORCID: 0000-0001-9270-6569

Also affiliated with Johns Hopkins University, Carnegie Institution for Science, Johns Hopkins Medicine, Department of Embryology, University of Baltimore

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 7 papers. Top paper: “Single-molecule sequencing of long DNA molecules allows high contiguity de novo genome assembly for the fungus fly, Sciara coprophila”.

Single-molecule sequencing of long DNA molecules allows high contiguity de novo genome assembly for the fungus fly, Sciara coprophila

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.24.963009
N/A
0.104DataRank · unranked
1 citations

Michael S. Foulk, Jacob E. Bliss, Carrie M. Coleman, Nanyan Lu, Reza Mazloom +4 more

High contiguity de novo genome assembly and DNA modification analyses for the fungus fly, Sciara coprophila, using single-molecule sequencing

BMC Genomics(2021)10.1186/s12864-021-07926-2
N/A
0DataRank · unranked
35 citations

Michael S. Foulk, Jacob E. Bliss, Carrie M. Coleman, Nanyan Lu, Reza Mazloom +4 more

Sciara coprophila larvae upregulate DNA repair pathways and downregulate developmental regulators in response to ionizing radiation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.28.466123
N/A
0DataRank · unranked
0 citations

Jack R Bateman, Kodie Garza, Julia Borden, Jaison Jain, Alexia Brown +4 more

Bradysia (Sciara) coprophila larvae up-regulate DNA repair pathways and down-regulate developmental regulators in response to ionizing radiation

Genetics(2023)10.1093/genetics/iyad208
N/A
0DataRank · unranked
4 citations

Jack R Bateman, Kodie Garza, Julia Borden, Jaison Jain, Alexia Brown +4 more

Chromosome-scale scaffolds of the fungus gnat genome reveal multi-Mb-scale chromosome-folding interactions, centromeric enrichments of retrotransposons, and candidate telomere sequences

BMC Genomics(2025)10.1186/s12864-025-11573-2
N/A
0DataRank · unranked
2 citations

Susan A. Gerbi, Allan C. Spradling, John Urban

Cell-type- and chromosome-specific chromatin landscapes and DNA replication programs of Drosophila testis tumor stem cell–like cells

Genome Research(2025)10.1101/gr.280809.125
N/A
0DataRank · unranked
0 citations

Daniel Ringwalt, John Urban, Wingel Xue, Ryan J. Gleason, Keji Zhao +2 more

Improved short nascent strand sequencing (iSNS-seq) enhances DNA replication origin detection and reduces non-origin biases

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.22.696044
N/A
0DataRank · unranked
0 citations

John Urban, Nicola Neretti, Susan A. Gerbi, Miiko Sokka