Julián Ávila-Pacheco

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

4.3Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Temporal dynamics of the multi-omic response to endurance exercise training

Nature(2024)10.1038/s41586-023-06877-w

Top 7%

3.4DataRank

Top 7%248 citations

Primary authors, Lead Analysts, David Amar, Nicole R. Gay, Pierre M. Jean Beltran +95 more

Papers

Driven by 44 papers — median percentile 52. Top paper: “Metabolic modeling of single Th17 cells reveals regulators of autoimmunity”.

Metabolic modeling of single Th17 cells reveals regulators of autoimmunity

Cell(2021)10.1016/j.cell.2021.05.045

N/A

8.1DataRank · unranked

514 citations

Chao Wang, Johannes Fessler, David DeTomaso, Julián Ávila-Pacheco, James J. Kaminski +21 more

Temporal dynamics of the multi-omic response to endurance exercise training

Nature(2024)10.1038/s41586-023-06877-w

Top 7%

3.4DataRank

Top 7%248 citations

Primary authors, Lead Analysts, David Amar, Nicole R. Gay, Pierre M. Jean Beltran +95 more

De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1902766117

N/A

3.0DataRank · unranked

112 citations

Douglas P. Loesch, James A. Perry, Nancy L. Heard‐Costa, Daniel Taliun, Brian E. Cade +93 more

Targeting a Braf/Mapk pathway rescues podocyte lipid peroxidation in CoQ-deficiency kidney disease

Journal of Clinical Investigation(2021)10.1172/jci141380

N/A

1.6DataRank · unranked

50 citations

Choah Kim, Maria Kost‐Alimova, May Theng Ting, Keith Keller, Julián Ávila-Pacheco +15 more

Whole Genome Association Study of the Plasma Metabolome Identifies Metabolites Linked to Cardiometabolic Disease in Black Individuals

Nature Communications(2022)10.1038/s41467-022-32275-3

N/A

1.1DataRank · unranked

63 citations

Daniel H. Katz, Julián Ávila-Pacheco, Alexander G. Bick, Akhil Pampana, Jeremy Robbins +95 more

Global chemical effects of the microbiome include new bile-acid conjugations

Nature(2020)10.1038/s41586-020-2047-9

N/A

0.959DataRank · unranked

595 citations

Alexey V. Melnik, Alison Vrbanac, Ting Fu, Kathryn A. Patras, Mitchell P. Christy +53 more

Inflammation-associated nitrate facilitates ectopic colonization of oral bacterium Veillonella parvula in the intestine

Nature Microbiology(2022)10.1038/s41564-022-01224-7

N/A

0.749DataRank · unranked

146 citations

Eric M. Brown, Emily R. Temple, Michelle A. Onyekaba, Ahmed M. Mohamed, Kellyanne Duncan +9 more

In Silico Modeling of Metabolic State in Single Th17 Cells Reveals Novel Regulators of Inflammation and Autoimmunity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.23.912717

N/A

0.737DataRank · unranked

12 citations

Chao Wang, David DeTomaso, Julian Avila-Pacheco, Sarah Zaghouani, Johannes Fessler +17 more

Commensal consortia decolonize Enterobacteriaceae via ecological control

Nature(2024)10.1038/s41586-024-07960-6

N/A

0.704DataRank · unranked

108 citations

Takaaki Kawaguchi, Marie‐Madlen Pust, Keiko Yasuma-Mitobe, Damian R. Plichta, Naomi Hasegawa +29 more

Intrapersonal Stability of Plasma Metabolomic Profiles over 10 Years among Women

Metabolites(2022)10.3390/metabo12050372

Top 30%

0.663DataRank

Top 30%24 citations

Clemens Wittenbecher, Amy Deik, Sarah Jeanfavre, Julián Ávila-Pacheco, Bernard Rosner +5 more

Presurgical blood metabolites and risk of postsurgical pelvic pain in young patients with endometriosis

Fertility and Sterility(2022)10.1016/j.fertnstert.2022.02.012

N/A

0.557DataRank · unranked

40 citations

Oana A. Zeleznik, Allison F. Vitonis, Stacey A. Missmer, Marc R. Laufer, Julián Ávila-Pacheco +3 more

Tryptophan metabolism determines outcome in tuberculous meningitis: a targeted metabolomic analysis

eLife(2023)10.7554/elife.85307

N/A

0.510DataRank · unranked

29 citations

Julián Ávila-Pacheco, Le Thanh Hoang Nhat, Sofiati Dian, Dao Nguyen Vinh, Hoang Thanh Hai +22 more

Bacteroides sphingolipids promote anti-inflammatory responses through the mevalonate pathway

Cell Host & Microbe(2025)10.1016/j.chom.2025.05.007

N/A

0.477DataRank · unranked

23 citations

Emily R. Temple, Sarah Jeanfavre, Julián Ávila-Pacheco, Noël Taylor, Kai Liu +8 more

A Synthesis-Based Reverse Metabolomics Approach for the Discovery of Chemical Structures from Humans and Animals.

Research Square(2021)10.21203/rs.3.rs-820302/v1

N/A

0.464DataRank · unranked

21 citations

Emily C. Gentry, Stephanie L. Collins, Morgan Panitchpakdi, Pedro Belda‐Ferre, Allison K. Stewart +14 more

Temporal dynamics of the multi-omic response to endurance exercise training across tissues

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.21.508770

N/A

0.457DataRank · unranked

20 citations

David Amar, Nicole R. Gay, Pierre M. Jean Beltran, Joshua Adkins, José Juan Almagro Armenteros +95 more

Neural Spectral Prediction for Structure Elucidation with Tandem Mass Spectrometry

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.28.656653

N/A

0.373DataRank · unranked

11 citations

Mrunali Manjrekar, Babak Mahjour, Julián Ávila-Pacheco, Joules Provenzano, Eric C. Reynolds +9 more

Metabolic and Epigenomic Regulation of Th17/Treg Balance by the Polyamine Pathway

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.23.911966

N/A

0.361DataRank · unranked

7 citations

Allon Wagner, Johannes Fessler, Julian Avila-Pacheco, Jim Karminski, Sarah Zaghouani +22 more

Improving host-directed therapy for tuberculous meningitis by linking clinical and multi-omics data

Tuberculosis(2021)10.1016/j.tube.2021.102085

N/A

0.330DataRank · unranked

8 citations

Julián Ávila-Pacheco, Nguyễn Thụy Thương Thương, Ahmad Rizal Ganiem, Darma Imran, Raph L. Hamers +15 more

Pre-treatment untargeted cerebrospinal fluid metabolomic profiling in tuberculous meningitis uncovers pathways associated with mortality

Med(2025)10.1016/j.medj.2025.100703

N/A

0.292DataRank · unranked

6 citations

Kirsten C. J. van Abeelen, Edwin Ardiansyah, Julián Ávila-Pacheco, Sofiati Dian, Gesa Carstens +28 more

Stability of plasma metabolomics over 10 years among women

medRxiv(2022)10.1101/2022.01.05.22268819

Top 65%

0.198DataRank

Top 65%2 citations

Clemens Wittenbecher, Amy Deik, Sarah Jeanfavre, Julián Ávila-Pacheco, Bernard Rosner +5 more

Persistent PTSD symptoms are associated with plasma metabolic alterations relevant to long-term health: A metabolome-wide investigation in women

Psychological Medicine(2025)10.1017/s0033291724003374

N/A

0DataRank · unranked

3 citations

Katherine H. Shutta, Tianyi Huang, Raji Balasubramanian, Oana A. Zeleznik, Clary B. Clish +4 more

Autoimmune disease risk gene ANKRD55 promotes TH17 effector function through metabolic modulation

The Journal of Experimental Medicine(2025)10.1084/jem.20250185

N/A

0DataRank · unranked

1 citations

Lingjia Kong, Elizabeth A. Creasey, Sneha Rath, Lei Deng, Julián Ávila-Pacheco +11 more

A machine learning framework for classifying lipids in untargeted metabolomics using mass-to-charge ratios and retention times

Metabolomics(2025)10.1007/s11306-025-02343-y

N/A

0DataRank · unranked

1 citations

Yonatan Ayalew Mekonnen, Isis Narváez-Bandera, Vanessa Rubio, Dalia Ercan, Eric A. Welsh +13 more

Eclipse : a Python package for alignment of two or more nontargeted LC-MS metabolomics datasets

Bioinformatics(2025)10.1093/bioinformatics/btaf290

N/A

0DataRank · unranked

3 citations

Jesse Krejci, Chloe E Sturgeon, Courtney Dennis, Sarah Jeanfavre, Julián Ávila-Pacheco +2 more

Prospective study of circulating metabolomic profiles and breast cancer incidence among predominantly premenopausal women

British Journal of Cancer(2025)10.1038/s41416-025-03159-2

Top 100%

0DataRank

Top 100%0 citations

Oana A. Zeleznik, Emma E. McGee, Kristen D. Brantley, Raji Balasubramanian, Bernard Rosner +5 more

Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease

Nature Microbiology(2020)10.1038/s41564-019-0655-7

N/A

0DataRank · unranked

104 citations

Eric A. Franzosa, Jason Bishai, John W. Annand, Akihiko Oka, Jason Lloyd‐Price +12 more

Branched-Chain Amino Acids and Risk of Breast Cancer

JNCI Cancer Spectrum(2021)10.1093/jncics/pkab059

N/A

0DataRank · unranked

30 citations

Raji Balasubramanian, Yumeng Ren, Deirdre K. Tobias, Bernard Rosner, Cheng Peng +9 more

Human gut bacteria produce T H 17-modulating bile acid metabolites

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.08.425913

N/A

0DataRank · unranked

10 citations

Lina Yao, Yancong Zhang, Sena Bae, Gabriel D. D’Agostino, Eunha Kim +14 more

A biosynthetic pathway for the selective sulfonation of steroidal metabolites by human gut bacteria

Nature Microbiology(2022)10.1038/s41564-022-01176-y

N/A

0DataRank · unranked

89 citations

Gabriel D. D’Agostino, Jinseok Park, Saiyu Hang, Arijit A. Adhikari, Yancong Zhang +9 more

Metabolite profiling of CKD progression in the chronic renal insufficiency cohort study

JCI Insight(2022)10.1172/jci.insight.161696

N/A

0DataRank · unranked

58 citations

Zihe Zheng, Aditya Surapaneni, Bing Yu, Linda Zhou, Wen Zhou +21 more

Lipase regulation of cellular fatty acid homeostasis as a Parkinson’s disease therapeutic strategy

npj Parkinson s Disease(2022)10.1038/s41531-022-00335-6

N/A

0DataRank · unranked

24 citations

Haley Cirka, Jennifer L. Thies, Jooyoung Jeong, Sarah M. Niemi, Joon Yoon +12 more

Ornithine decarboxylase supports ILC3 responses in infectious and autoimmune colitis through positive regulation of IL-22 transcription

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2214900119

N/A

0DataRank · unranked

40 citations

Siyan Cao, Tihana Tršan, Jennifer K. Bando, Julián Ávila-Pacheco, John L. Cleveland +4 more

Liver-specific FGFR4 knockdown in mice on an HFD increases bile acid synthesis and improves hepatic steatosis

Journal of Lipid Research(2022)10.1016/j.jlr.2022.100324

N/A

0DataRank · unranked

25 citations

Bruna Brasil Brunao, Xiangyu Liu, Frédéric Tremblay, Kevin Fitzgerald, Julián Ávila-Pacheco +4 more

Metabolomic and transcriptomic signatures of influenza vaccine response in healthy young and older adults

Aging Cell(2022)10.1111/acel.13682

N/A

0DataRank · unranked

24 citations

Subhasis Mohanty, Heather A. Kang, Lingjia Kong, Julián Ávila-Pacheco, Samit R. Joshi +12 more

Plasma Metabolite Profiles of Red Meat, Poultry, and Fish Consumption, and Their Associations with Colorectal Cancer Risk

Nutrients(2022)10.3390/nu14050978

N/A

0DataRank · unranked

19 citations

Paulette D. Chandler, Oana A. Zeleznik, Kana Wu, You Wu, Kanhua Yin +14 more

Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease

Nature Medicine(2023)10.1038/s41591-023-02217-7

N/A

0DataRank · unranked

156 citations

Jared R. Mayers, Yancong Zhang, Amrisha Bhosle, Nathaniel R. Glasser, Long H. Nguyen +15 more

Gut microbiome and metabolome profiling in Framingham heart study reveals cholesterol-metabolizing bacteria

Cell(2024)10.1016/j.cell.2024.03.014

N/A

0DataRank · unranked

226 citations

Martin Stražar, Ahmed M. Mohamed, Julián Ávila-Pacheco, Rebecca L. Walker, Tina Lebar +21 more

Linking microbial genes to plasma and stool metabolites uncovers host-microbial interactions underlying ulcerative colitis disease course

Cell Host & Microbe(2024)10.1016/j.chom.2023.12.013

N/A

0DataRank · unranked

72 citations

Martin Stražar, Julián Ávila-Pacheco, Daniel F. Rojas‐Tapias, Eric M. Brown, Emily R. Temple +19 more

Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease

Molecular Systems Biology(2024)10.1038/s44320-024-00027-8

N/A

0DataRank · unranked

11 citations

Sena Bae, Yancong Zhang, Eunyoung Chun, Julián Ávila-Pacheco, Ludwig Geistlinger +11 more

Persistent PTSD symptoms are associated with plasma metabolic alterations relevant to long-term health: A metabolome-wide investigation in women

medRxiv(2024)10.1101/2024.08.07.24311628

N/A

0DataRank · unranked

0 citations

Katherine H. Shutta, Tianyi Huang, Raji Balasubramanian, Oana A. Zeleznik, Clary B. Clish +4 more

Preventing Inappropriate Signals Pre- and Post-Ligand Perception by a Toggle-Switch Mechanism of ERECTA

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.20.612365

N/A

0DataRank · unranked

0 citations

Michal Maes, Alicia M. Cochran, Julián Ávila-Pacheco, Paul Derbyshire, Jan Sklenář +5 more

Preventing inappropriate signals pre- and post-ligand perception by a toggle switch mechanism of ERECTA

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2420196122

N/A

0DataRank · unranked

12 citations

Michal Maes, Alicia M. Cochran, Julián Ávila-Pacheco, Paul Derbyshire, Jan Sklenář +5 more

Portal vein-enriched metabolites as intermediate regulators of the gut microbiome in insulin resistance

Cell Metabolism(2025)10.1016/j.cmet.2025.08.005

N/A

0DataRank · unranked

8 citations

F. Moreau, Marion Soto, Yoshiyuki Watanabe, Loc−Duyen D. Pham, Jimmy Zhong +13 more

Alterations in DNA Methylation, Proteomic, and Metabolomic Profiles in African Ancestry Populations with APOL1 Risk Alleles

Journal of the American Society of Nephrology(2025)10.1681/asn.0000000688

N/A

0DataRank · unranked

2 citations

Ashley W. Scadden, Amarnath Marthi, Victoria L. Buchanan, Yishu Qu, Kendra Ferrier +33 more

Julián Ávila-Pacheco

Indexed papers

Top data-sharing exemplar

Papers