Mark Akeson

EngineeringBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes”.

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

Nature Biotechnology(2020)10.1038/s41587-020-0503-6

N/A

12.8DataRank · unranked

655 citations

Trevor Pesout, Ryan Lorig-Roach, Marina Haukness, Hugh E. Olsen, Colleen M. Bosworth +27 more

Advances in nanopore direct RNA sequencing

Nature Methods(2022)10.1038/s41592-022-01633-w

N/A

0.814DataRank · unranked

227 citations

Robin Abu-Shumays, Hugh E. Olsen, Mark Akeson, Miten Jain

CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma

Genome biology(2020)10.1186/s13059-020-01995-4

N/A

0.761DataRank · unranked

159 citations

Martina Malatesta, Brian V. Lien, Parna Saha, Shivani S. Thombare, Sung Jun Hong +16 more

Direct Nanopore Sequencing of Individual Full Length tRNA Strands

ACS Nano(2021)10.1021/acsnano.1c06488

N/A

0.732DataRank · unranked

131 citations

Vinay Chaitanya Poodari, Miten Jain, Hugh E. Olsen, Mark Akeson, Robin Abu-Shumays +1 more

A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

Cell Systems(2021)10.1016/j.cels.2021.05.021

N/A

0.564DataRank · unranked

42 citations

David Haan, Kristen D. Dang, Kami Chiotti, Matthew Inkman, Andrew Lamb +32 more

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.05.438352

N/A

0.554DataRank · unranked

7 citations

Angie S. Hinrichs, Miten Jain, Namrita Dhillon, Scott La, Joshua D. Kapp +17 more

Synthesis of modified nucleotide polymers by the poly(U) polymerase Cid1: Application to direct RNA sequencing on nanopores

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.06.451372

N/A

0.104DataRank · unranked

1 citations

Logan Mulroney, Jen Quick-Cleveland, Miten Jain, Mark Akeson, Manuel Ares +1 more

Nanopore ReCappable sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs

Nucleic Acids Research(2022)10.1093/nar/gkac144

N/A

0DataRank · unranked

29 citations

Logan Mulroney, Adrien Léger, Matteo Castelli, Elena Criscuolo, Maia Kavanagh Williamson +20 more

Combining Nanopore direct RNA sequencing with genetics and mass spectrometry for analysis of T-loop base modifications across 42 yeast tRNA isoacceptors

Nucleic Acids Research(2024)10.1093/nar/gkae796

N/A

0DataRank · unranked

31 citations

Niki K. Thomas, Joshua D. Jones, Robin Abu-Shumays, Abigail L Vaaler, Mark Akeson +4 more

Inflammation Drives Alternative First Exon usage to Regulate Immune Genes including a Novel Iron Regulated Isoform of Aim2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.06.190330

N/A

0DataRank · unranked

6 citations

Pratibha Jagannatha, Sergio Covarrubias, Matthew A. Cattle, Rojin Safavi, Ran Song +10 more

Identification of high confidence human poly(A) RNA isoform scaffolds using nanopore sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.18.389049

N/A

0DataRank · unranked

4 citations

Madalee G. Wulf, Ira Schildkraut, George Tzertzinis, J. A. Buswell, Miten Jain +6 more

Identification of high-confidence human poly(A) RNA isoform scaffolds using nanopore sequencing

RNA(2021)10.1261/rna.078703.121

N/A

0DataRank · unranked

29 citations

Madalee G. Wulf, Ira Schildkraut, George Tzertzinis, J. A. Buswell, Miten Jain +6 more

Synthesis of modified nucleotide polymers by the poly(U) polymerase Cid1: application to direct RNA sequencing on nanopores

RNA(2021)10.1261/rna.078898.121

N/A

0DataRank · unranked

20 citations

Logan Mulroney, Jen Quick-Cleveland, Miten Jain, Mark Akeson, Manuel Ares +1 more

Direct Nanopore Sequencing of Individual Full Length tRNA Strands

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.26.441285

N/A

0DataRank · unranked

9 citations

Vinay Chaitanya Poodari, Miten Jain, Hugh E. Olsen, Mark Akeson, Robin Abu-Shumays +1 more

Nanopore ReCappable Sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469860

N/A

0DataRank · unranked

0 citations

Logan Mulroney, Adrien Léger, Matteo Castelli, Elena Criscuolo, Maia Kavanagh Williamson +20 more