Jonathan M. Irish

Also affiliated with University of Colorado Anschutz Medical Campus, Vanderbilt University Medical Center

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 29 papers. Top paper: “Single-cell profiling of the antigen-specific response to BNT162b2 SARS-CoV-2 RNA vaccine”.

Single-cell profiling of the antigen-specific response to BNT162b2 SARS-CoV-2 RNA vaccine

Nature Communications(2022)10.1038/s41467-022-31142-5

N/A

1.5DataRank · unranked

57 citations

Erin M. Wilfong, Kelsey Voss, Sierra Barone, Andrea R. Shiakolas, Nagarajan Raju +15 more

Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy

eLife(2021)10.7554/elife.64653

N/A

1.0DataRank · unranked

40 citations

A Paul, Lyndsey M. Muehling, Joanne Lannigan, William W. Kwok, Ronald B. Turner +3 more

Single-cell analysis by mass cytometry reveals metabolic states of early-activated CD8+ T cells during the primary immune response

Immunity(2021)10.1016/j.immuni.2021.02.018

N/A

0.729DataRank · unranked

128 citations

Kamir J. Hiam-Galvez, Diana M. Marquez, Iliana Tenvooren, Matthew Z. Madden, Diana C. Contreras +6 more

A multicenter phase Ib trial of the histone deacetylase inhibitor entinostat in combination with pembrolizumab in patients with myelodysplastic syndromes/neoplasms or acute myeloid leukemia refractory to hypomethylating agents

Annals of Hematology(2023)10.1007/s00277-023-05552-4

N/A

0.726DataRank · unranked

23 citations

Rory M. Shallis, Elad Sharon, Silvia Park, Rahul Ramaswamy, Caroline E. Roe +18 more

HLA-DR cancer cells expression correlates with T cell infiltration and is enriched in lung adenocarcinoma with indolent behavior

Scientific Reports(2021)10.1038/s41598-021-93807-3

N/A

0.510DataRank · unranked

29 citations

Yong Zou, Tatiana Novitskaya, Georgii Vasiukov, Aneri Balar, Dianna J. Rowe +9 more

High-Dimensional Analysis Reveals Distinct Endotypes in Patients With Idiopathic Inflammatory Myopathies

Frontiers in Immunology(2022)10.3389/fimmu.2022.756018

N/A

0.464DataRank · unranked

21 citations

Todd Bartkowiak, Katherine N. Vowell, Camille S. Westlake, Jonathan M. Irish, Peggy L. Kendall +3 more

An immunogenic cell injury module for the single-cell multiplexed activity metabolomics platform to identify promising anti-cancer natural products

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.102300

N/A

0.385DataRank · unranked

12 citations

Kathryn E. Penton, Zhihan Zhao, Madeline Hayes, Sierra M. Lima, Jonathan M. Irish +2 more

Alignment, segmentation and neighborhood analysis in cyclic immunohistochemistry data using CASSATT

Cytometry Part B Clinical Cytometry(2023)10.1002/cyto.b.22114

N/A

0.208DataRank · unranked

3 citations

Rohit Khurana, Todd Bartkowiak, Portia Thomas, Shamilene Sivagnanam, Courtney B. Betts +5 more

EV Fingerprinting: Resolving extracellular vesicle heterogeneity using multi-parametric flow cytometry

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.10.515864

N/A

0.208DataRank · unranked

3 citations

Fabiane C. L. Fernandes, Patricia Midori Murobushi Ozawa, Sierra M. Lima, Tatyana Vagner, Bong Hwan Sung +8 more

Distinct Type 1 Immune Networks Underlie the Severity of Restrictive Lung Disease after COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.03.587929

N/A

0.165DataRank · unranked

2 citations

Lyndsey M. Muehling, Alexandra Kadl, Shay Ladd, Catherine A. Bonham, Claire E. Cross +15 more

Connecting chemical structure to single cell signaling profiles

Communications Biology(2025)10.1038/s42003-025-08545-3

N/A

0.104DataRank · unranked

1 citations

Madeline Hayes, Laura C. Geben, Rebecca A. Ihrie, Lauren E. Brown, John A. Porco +2 more

Mechanism of CD79A and CD79B Support for IgM+ B Cell Fitness through B Cell Receptor Surface Expression

The Journal of Immunology(2022)10.4049/jimmunol.2200144

N/A

0DataRank · unranked

73 citations

Baoyan Bai, Vera Hilden, Lise K. Bollum, Thea Kristin Våtsveen, Ludvig A. Munthe +5 more

38 Spatial immune profiling of human glioblastoma tissue reveals the presence of aggregated lymphoid niches in the tumor microenvironment

Regular and Young Investigator Award Abstracts(2021)10.1136/jitc-2021-sitc2021.038

N/A

0DataRank · unranked

0 citations

Asa A. Brockman, Sierra Barone, Madeline Hayes, Caroline E. Roe, Justine Sinnaeve +10 more

High-dimensional analysis reveals abnormal B cell subsets associated with specific changes to circulating T and myeloid cell populations in patients with idiopathic inflammatory myopathies

medRxiv(2021)10.1101/2021.03.23.21253635

N/A

0DataRank · unranked

1 citations

Todd Bartkowiak, Katherine N. Vowell, Camille S. Westlake, Jonathan M. Irish, Peggy L. Kendall +3 more

STAT1 Gain-of-Function Variants Drive Altered T Cell Prevalence, Metabolism, and Heightened IL-6 Sensitivity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.10.468135

N/A

0DataRank · unranked

2 citations

Todd Bartkowiak, Daniel E. Dulek, Yasmin Khan, Madeline Hayes, Samuel Schaefer +5 more

Single-Cell Profiling of the Antigen-Specific Response to BNT162b2 SARS-CoV-2 RNA Vaccine

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.453981

N/A

0DataRank · unranked

9 citations

Erin M. Wilfong, Kelsey Voss, Sierra Barone, Andrea R. Shiakolas, Nagarajan Raju +15 more

Integrated Multi-omics Analysis of Early Lung Adenocarcinoma Links Tumor Biological Features with Predicted Indolence or Aggressiveness

Cancer Research Communications(2023)10.1158/2767-9764.crc-22-0373

N/A

0DataRank · unranked

8 citations

Yong Zou, Khushbu Patel, Shilin Zhao, Alexis Coullomb, Dianna J. Rowe +7 more

An immunosuppressed microenvironment distinguishes lateral ventricle–contacting glioblastomas

JCI Insight(2023)10.1172/jci.insight.160652

N/A

0DataRank · unranked

10 citations

Sierra M. Lima, Madeline Hayes, Akshitkumar M. Mistry, Asa A. Brockman, Justine Sinnaeve +10 more

Selective Inhibition of JAK1 Primes STAT5-Driven Human Leukemia Cells for ATRA-Induced Differentiation

Targeted Oncology(2021)10.1007/s11523-021-00830-5

N/A

0DataRank · unranked

3 citations

Kristy R. Stengel, James C. Pino, Gretchen Johnston, Merrida Childress, Agnieszka E. Gorska +15 more

Multiplexed cytometry for single cell chemical biology

Methods in cell biology(2023)10.1016/bs.mcb.2023.03.007

N/A

0DataRank · unranked

2 citations

Madeline Hayes, Joseph A. Balsamo, Hannah L. Thirman, Brian O. Bachmann, Jonathan M. Irish +1 more

Dephosphorylation of 4EBP1/2 Induces Prenatal Neural Stem Cell Quiescence

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.14.528513

N/A

0DataRank · unranked

3 citations

Asa A. Brockman, Mary‐Bronwen L. Chalkley, Serena R. Sweet, Julia E. Gallagher, Alexandra L. Scheuing +5 more

Reply to Yasuma et al .

American Journal of Respiratory and Critical Care Medicine(2023)10.1164/rccm.202309-1622le

N/A

0DataRank · unranked

0 citations

Masako Abney, Jacqueline-Yvonne Cephus, Caroline E. Roe, Jonathan M. Irish, Nicholas J. Shelburne +4 more

Multiparametric Single-Vesicle Flow Cytometry Resolves Extracellular Vesicle Heterogeneity and Reveals Selective Regulation of Biogenesis and Cargo Distribution

ACS Nano(2024)10.1021/acsnano.3c11561

N/A

0DataRank · unranked

54 citations

Fabiane Fernandes, Patricia Midori Murobushi Ozawa, Marques Jackson, Matthieu Masureel, Hoangdung Ho +12 more

Defects in NK cell immunity of pediatric cancer patients revealed by deep immune profiling

iScience(2024)10.1016/j.isci.2024.110837

N/A

0DataRank · unranked

3 citations

Naeem Khan, Philip I. Murray, Carrie R. Willcox, Tracey A. Haigh, Benjamin E. Willcox +9 more

Multiplexed activity metabolomics for isolation of filipin macrolides from a hypogean actinomycete

The Journal of Antibiotics(2024)10.1038/s41429-024-00792-6

N/A

0DataRank · unranked

1 citations

Joseph A. Balsamo, Benjamin J. Reisman, Sierra Barone, Jonathan M. Irish, Brian O. Bachmann +1 more

IL-8 Instructs Macrophage Identity in Lateral Ventricle Contacting Glioblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.29.587030

N/A

0DataRank · unranked

3 citations

Asa A. Brockman, Claire E. Cross, Madeline Hayes, Bret C. Mobley, Akshitkumar M. Mistry +7 more

CMV exposure drives long-term CD57+ CD4 memory T-cell inflation following allogeneic stem cell transplant

Blood(2021)10.1182/blood.2020009492

N/A

0DataRank · unranked

25 citations

Antiopi Varelias, Anupama Reddy, Sierra Barone, Stuart D. Olver, Kate Chilson +16 more

Distinct type 1 immune networks underlie the severity of restrictive lung disease after COVID-19

Nature Immunology(2025)10.1038/s41590-025-02110-0

N/A

0DataRank · unranked

10 citations

Lyndsey M. Muehling, Alexandra Kadl, Shay Ladd, Catherine A. Bonham, Claire E. Cross +19 more

Unsupervised machine learning reveals risk stratifying glioblastoma tumor cells

eLife(2020)10.7554/elife.56879

N/A

0DataRank · unranked

33 citations

Justine Sinnaeve, Akshitkumar M. Mistry, Sierra Barone, Asa A. Brockman, Kirsten E. Diggins +8 more