🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Shuo Zhang

City University of New York

ORCID: 0000-0001-9497-6263

Also affiliated with Hunter College

Computer ScienceBiochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 9 papers. Top paper: “Potent Noncovalent Inhibitors of the Main Protease of SARS-CoV-2 from Molecular Sculpting of the Drug Perampanel Guided by Free Energy Perturbation Calculations”.

Potent Noncovalent Inhibitors of the Main Protease of SARS-CoV-2 from Molecular Sculpting of the Drug Perampanel Guided by Free Energy Perturbation Calculations

ACS Central Science(2021)10.1021/acscentsci.1c00039
N/A
0.834DataRank · unranked
259 citations

Elizabeth A. Stone, M.G. Deshmukh, Joseph A. Ippolito, Mohammad Mehdi Ghahremanpour, Julian Tirado‐Rives +11 more

End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins

PLOS Computational Biology(2023)10.1371/journal.pcbi.1010851
N/A
0.793DataRank · unranked
21 citations

Li Xie, Shuo Zhang, Muge Chen, Di He, Amitesh Badkul +8 more

Proof-of-concept studies with a computationally designed M pro inhibitor as a synergistic combination regimen alternative to Paxlovid

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2320713121
N/A
0.425DataRank · unranked
16 citations

Irfan Ullah, Amalendu P. Ranjan, Shuo Zhang, Qihao Wu, Krasimir A. Spasov +9 more

Exploration of Dark Chemical Genomics Space via Portal Learning: Applied to Targeting the Undruggable Genome and COVID-19 Anti-Infective Polypharmacology

Research Square(2021)10.21203/rs.3.rs-1109318/v1
N/A
0.348DataRank · unranked
5 citations

Li Xie, Muge Chen, Yang Liu, Di He, Shuo Zhang +4 more

MousiPLIER: A Mouse Pathway-Level Information Extractor Model

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.31.551386
N/A
0.165DataRank · unranked
2 citations

Benjamin J. Heil, Weiguang Mao, Maria Chikina, Casey S. Greene, Elizabeth A. Heller +1 more

MousiPLIER: A Mouse Pathway-Level Information Extractor Model

eneuro(2024)10.1523/eneuro.0313-23.2024
N/A
0.104DataRank · unranked
1 citations

Benjamin J. Heil, Weiguang Mao, Maria Chikina, Casey S. Greene, Elizabeth A. Heller +1 more

Sequence-based Drug-Target Binding Site Pre-training Enables Cryptic Pocket Detection and Improves Binding Affinity and Kinetics Prediction

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.14.633076
N/A
0DataRank · unranked
1 citations

Li Xie, Daniel Tiourine, Lei Xie, Shuo Zhang

TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcription

Genome biology(2020)10.1186/s13059-020-01992-7
N/A
0DataRank · unranked
8 citations

Qingshu Meng, Bo Xia, Shuo Zhang, Jie Lv, Dongyu Zhao +7 more

Improving Attention Mechanism in Graph Neural Networks via Cardinality Preservation

PubMed(2020)10.24963/ijcai.2020/194
N/A
0DataRank · unranked
47 citations

Lei Xie, Shuo Zhang