Yi‐Yan Yang

Also affiliated with National Institutes of Health, Harvard University, University of Electronic Science and Technology of China, Northeast Agricultural University, New York University Shanghai, United States National Library of Medicine, Affiliated Hospital of Southwest Medical University, Sichuan Cancer Hospital, Office of Extramural Research

Biochemistry, Genetics and Molecular BiologyMaterials ScienceImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 13 papers. Top paper: “Large-scale genomic survey with deep learning-based method reveals strain-level phage specificity determinants”.

Large-scale genomic survey with deep learning-based method reveals strain-level phage specificity determinants

GigaScience(2024)10.1093/gigascience/giae017

N/A

0.631DataRank · unranked

22 citations

Keith Dufault‐Thompson, Wei Yan, Tian Cai, Lei Xie, Xiaofang Jiang +1 more

Wastewater surveillance uncovers regional diversity and dynamics of SARS-CoV-2 variants across nine states in the USA

The Science of The Total Environment(2023)10.1016/j.scitotenv.2023.162862

N/A

0.449DataRank · unranked

19 citations

Yi‐Yan Yang, Erin M. Driver, Arjun Magge, Simona Kraberger, Joy M. Custer +8 more

The taxonomic distribution of histamine-secreting bacteria in the human gut microbiome

BMC Genomics(2021)10.1186/s12864-021-08004-3

N/A

0DataRank · unranked

52 citations

Yi‐Yan Yang, A. Brantley Hall, Xiaofang Jiang, Zhongyu Mou

Evolink: a phylogenetic approach for rapid identification of genotype–phenotype associations in large-scale microbial multispecies data

Bioinformatics(2023)10.1093/bioinformatics/btad215

N/A

0DataRank · unranked

8 citations

Xiaofang Jiang, Yi‐Yan Yang

Discovery of the gut microbial enzyme responsible for bilirubin reduction to urobilinogen

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.07.527579

N/A

0DataRank · unranked

10 citations

Sophia Levy, Keith Dufault‐Thompson, Glory Minabou Ndjite, Ashley Weiss, Domenick J. Braccia +8 more

Deciphering Phage-Host Specificity Based on the Association of Phage Depolymerases and Bacterial Surface Glycan with Deep Learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.16.545366

N/A

0DataRank · unranked

5 citations

Keith Dufault‐Thompson, Wei Yan, Tian Cai, Lei Xie, Xiaofang Jiang +1 more

BilR is a gut microbial enzyme that reduces bilirubin to urobilinogen

Nature Microbiology(2024)10.1038/s41564-023-01549-x

N/A

0DataRank · unranked

64 citations

Sophia Levy, Keith Dufault‐Thompson, Gabriela Arp, Aoshu Zhong, Glory Minabou Ndjite +11 more

Comprehensive Genomic and Evolutionary Analysis of Biofilm Matrix Clusters and Proteins in the Vibrio Genus

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.19.608685

N/A

0DataRank · unranked

2 citations

Jing Yan, Rich Olson, Xiaofang Jiang, Yi‐Yan Yang

Conformations and sequence determinants in the lipid binding of an adhesive peptide derived from Vibrio cholerae biofilm

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.14.664771

N/A

0DataRank · unranked

1 citations

Ramesh Prasad, Sarvagya Saluja, Yi‐Yan Yang, Qi Yan, Sydney O. Shuster +7 more

Deep Learning Transforms Phage-Host Interaction Discovery from Metagenomic Data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.26.656232

N/A

0DataRank · unranked

0 citations

Tong Wang, Dan Huang, Xu‐Wen Wang, Scott T. Weiss, Joshua R. Korzenik +2 more

Characterizing Transcriptional Regulatory Sequences in Coronaviruses and Their Role in Recombination

Molecular Biology and Evolution(2020)10.1093/molbev/msaa281

N/A

0DataRank · unranked

67 citations

Wei Yan, A. Brantley Hall, Xiaofang Jiang, Yi‐Yan Yang

Adapting CRISPR-associated transposons for rapid and high-throughput reverse genetics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.31.685825

N/A

0DataRank · unranked

0 citations

Franz G. Zingl, Yi‐Yan Yang, Kaylee T. Nguyen, Yang-Yu Liu, Matthew K. Waldor +1 more

Characterizing transcriptional regulatory sequences in coronaviruses and their role in recombination

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.21.163410

N/A

0DataRank · unranked

12 citations

Wei Yan, A. Brantley Hall, Xiaofang Jiang, Yi‐Yan Yang