🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Gökçen Eraslan

Gene Therapy Laboratory

ORCID: 0000-0001-9579-2909
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
6.7Author DataRank

Indexed papers

6in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8
Top 4%
5.4DataRank
Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

Papers

Driven by 26 papers — median percentile 0. Top paper: “The scverse project provides a computational ecosystem for single-cell omics data analysis”.

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8
Top 4%
5.4DataRank
Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

Toward a Common Coordinate Framework for the Human Body

Cell(2019)10.1016/j.cell.2019.11.019
N/A
5.1DataRank · unranked
134 citations

Tim Stuart, Shila Ghazanfar, Tommaso Biancalani, Eyal Fisher, Andrew Butler +8 more

Single cell RNA-seq denoising using a deep count autoencoder

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/300681
N/A
3.3DataRank · unranked
86 citations

Lukas M. Simon, Maria Mircea, Nikola S. Mueller, Fabian Joachim Theis, Gökçen Eraslan

Integrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns

Nature Communications(2019)10.1038/s41467-019-10461-0
N/A
2.8DataRank · unranked
151 citations

Gökçen Eraslan, Christian M. Page, Jari Lahti, Marius Lahti-Pulkkinen, Esa Hämäläinen +233 more

DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning

PLOS Computational Biology(2020)10.1371/journal.pcbi.1007616
N/A
2.3DataRank · unranked
88 citations

Till F. M. Andlauer, Jade Martins, Stella Iurato, Brigitte Kühnel, Melanie Waldenberger +26 more

Single-cell profiling of proteins and chromatin accessibility using PHAGE-ATAC

Nature Biotechnology(2021)10.1038/s41587-021-01065-5
N/A
2.0DataRank · unranked
69 citations

Caleb A. Lareau, Leif S. Ludwig, Gökçen Eraslan, Feimei Liu, Aaron M. Ring +3 more

High-density spatial transcriptomics arrays for in situ tissue profiling

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/563338
N/A
1.9DataRank · unranked
25 citations

Johanna Klughammer, Linnea Stenbeck, Fredrik Salmén, Tarmo Äijö, Richard Bonneau +9 more

Predicting gene expression in massively parallel reporter assays: A comparative study

Human Mutation(2017)10.1002/humu.23197
N/A
1.7DataRank · unranked
52 citations

Haoyang Zeng, Matthew D. Edwards, Gamze Gürsoy, Kevin Tian, R. Alan Harris +20 more

Single-nucleus cross-tissue molecular reference maps to decipher disease gene function

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.19.452954
Top 16%
1.3DataRank
Top 16%27 citations

Eugene Drokhlyansky, Shankara Anand, Ayshwarya Subramanian, Evgenij Fiskin, Michal Slyper +19 more

Deep learning: new computational modelling techniques for genomics

Nature Reviews Genetics(2019)10.1038/s41576-019-0122-6
N/A
1.1DataRank · unranked
1199 citations

Žiga Avsec, Julia-Stefanie Frick, Fabian Joachim Theis, Gökçen Eraslan

High-definition spatial transcriptomics for in situ tissue profiling

Nature Methods(2019)10.1038/s41592-019-0548-y
N/A
1.1DataRank · unranked
1196 citations

Gökçen Eraslan, Fredrik Salmén, Johanna Klughammer, Linnea Stenbeck, Denis Schapiro +13 more

Single-cell RNA-seq denoising using a deep count autoencoder

Nature Communications(2019)10.1038/s41467-018-07931-2
N/A
1.1DataRank · unranked
1140 citations

Lukas M. Simon, Maria Mircea, Nikola S. Mueller, Fabian Joachim Theis, Gökçen Eraslan

The Human and Mouse Enteric Nervous System at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.08.003
N/A
0.948DataRank · unranked
556 citations

Christopher S. Smillie, Nicholas Van Wittenberghe, Maria Ericsson, Gabriel K. Griffin, David S. Fischer +14 more

Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity

Hepatology Communications(2021)10.1002/hep4.1854
N/A
0.845DataRank · unranked
278 citations

Jawairia Atif, Jeff C. Liu, Catia T. Perciani, Xue‐Zhong Ma, Cornelia Thoeni +18 more

Single Cell, Single Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.27.436882
N/A
0.631DataRank · unranked
15 citations

Jawairia Atif, Jeff C. Liu, Cátia T. Perciani, Xue‐Zhong Ma, Cornelia Thoeni +15 more

Single-cell multimodal profiling of proteins and chromatin accessibility using PHAGE-ATAC

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.01.322420
N/A
0.564DataRank · unranked
11 citations

Caleb A. Lareau, Gökçen Eraslan, Leif S. Ludwig, Prisca Liberali, Evgenij Fiskin

Multi-modal skin atlas identifies a multicellular immune-stromal community associated with altered cornification and specific T cell expansion in atopic dermatitis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.29.563503
N/A
0.564DataRank · unranked
11 citations

Gökçen Eraslan, Maria Beatrice Alora, Juan Manuel Leyva-Castillo, Sean Kim, Heather Choe +24 more

Polygraph: A Software Framework for the Systematic Assessment of Synthetic Regulatory DNA Elements

10.1101/2023.11.27.568764
N/A
0.241DataRank · unranked
4 citations

Laura M. Gunsalus, Anay Gupta, Tommaso Biancalani, Gökçen Eraslan, Avantika Lal

Derivative-Free Guidance in Continuous and Discrete Diffusion Models with Soft Value-Based Decoding

arXiv (Cornell University)(2024)10.48550/arxiv.2408.08252
N/A
0.182DataRank · unranked
2 citations

Yulai Zhao, Chenyu Wang, Gabriele Scalia, Gökçen Eraslan, Surag Nair +6 more

Variably methylated regions in the newborn epigenome: environmental, genetic and combined influences

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/436113
N/A
0.165DataRank · unranked
2 citations

Gökçen Eraslan, Jari Lahti, Christian M. Page, Marius Lahti-Pulkkinen, Esa Hämäläinen +30 more

Data used in ECLIPSER methods paper and GTEx snRNA-seq cross-tissue reference map analysis

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.5725801
Top 100%
0DataRank
Top 100%0 citations

Jiali Wang, Gökçen Eraslan, Duyen T. Nguyen, Andrew R. Hamel, Brian Cole +5 more

ECLIPSER: identifying causal cell types and genes for complex traits through single cell enrichment of e/sQTL-mapped genes in GWAS loci

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469720
N/A
0DataRank · unranked
12 citations

Jiali Wang, Gökçen Eraslan, Shankara Anand, Andrew R. Hamel, Brian Cole +5 more

Benchmarking DNA Sequence Models for Causal Regulatory Variant Prediction in Human Genetics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.11.637758
N/A
0DataRank · unranked
17 citations

Gökçen Eraslan, Yun S. Song, Gonzalo Benegas

Data used in ECLIPSER methods paper and GTEx snRNA-seq cross-tissue reference map analysis

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.6402401
Top 100%
0DataRank
Top 100%0 citations

Jiali Wang, Gökçen Eraslan, Duyen T. Nguyen, Andrew R. Hamel, Brian Cole +5 more

Bioinformatics in Psychiatric Genetics

Psychiatric Genetics(2018)10.1093/med/9780190221973.003.0009
N/A
0DataRank · unranked
0 citations

Ivan Kondofersky, Karolina Worf, Fabian Joachim Theis, Gökçen Eraslan, Nikola S. Mueller

Data used in ECLIPSER methods paper and GTEx snRNA-seq cross-tissue reference map analysis

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.5725802
Top 100%
0DataRank
Top 100%0 citations

Jiali Wang, Gökçen Eraslan, Duyen T. Nguyen, Andrew R. Hamel, Brian Cole +5 more