Edward C. Holmes

MedicineAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 50 papers. Top paper: “Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases”.

Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases

Microbiology and Molecular Biology Reviews(2008)10.1128/mmbr.00004-08

N/A

13.1DataRank · unranked

862 citations

Edward C. Holmes, David M. Morens, Eun-Chung Park, Donald S. Burke, Charles H. Calisher +4 more

Farmed fur animals harbour viruses with zoonotic spillover potential

Nature(2024)10.1038/s41586-024-07901-3

N/A

2.0DataRank · unranked

89 citations

Wenbo Wan, Yu Kang, Philippe Lemey, John H.‐O. Pettersson, Yuhai Bi +15 more

A new coronavirus associated with human respiratory disease in China

Nature(2020)10.1038/s41586-020-2008-3

N/A

1.4DataRank · unranked

12844 citations

Su Zhao, Bin Yu, Yan-Mei Chen, Wen Wang, Zhi-Gang Song +18 more

Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding

The Lancet(2020)10.1016/s0140-6736(20)30251-8

N/A

1.4DataRank · unranked

12544 citations

Xiang Zhao, Juan Li, Peihua Niu, Bo Yang, Honglong Wu +32 more

Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins

Nature(2020)10.1038/s41586-020-2169-0

N/A

1.1DataRank · unranked

2036 citations

Na Jia, Yawei Zhang, Marcus Ho-Hin Shum, Jia-Fu Jiang, Huachen Zhu +24 more

Strong host phylogenetic and ecological effects on host competency for avian influenza in Australian wild birds

Proceedings of the Royal Society B Biological Sciences(2023)10.1098/rspb.2022.2237

N/A

0.937DataRank · unranked

37 citations

Simeon Lisovski, David Roshier, Márta Ferenczi, Bethany J. Hoye, Trent Leen +6 more

Portable sequencing in the field and the classroom: a retrospective examination of the circulation of DENV1 and DENV2 in Brazil

medRxiv(2020)10.1101/2020.09.01.20183301

N/A

0DataRank · unranked

1 citations

Marta Giovanetti, Vagner Fonseca, Joilson Xavier, Álvaro Salgado, Valdinete Alves do Nascimento +55 more

The origins of SARS-CoV-2: A critical review

Cell(2021)10.1016/j.cell.2021.08.017

N/A

0DataRank · unranked

513 citations

Stephen A. Goldstein, Angela L. Rasmussen, David L. Robertson, Alexander Crits‐Christoph, Joel O. Wertheim +16 more

SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse

Nature Microbiology(2021)10.1038/s41564-021-00932-w

N/A

0DataRank · unranked

315 citations

Mark D. Perkins, Jens H. Kuhn, Mark J. Pallen, Erik Alm, Brett N. Archer +42 more

RNA virome abundance and diversity is associated with host age in a bird species

Virology(2021)10.1016/j.virol.2021.06.007

N/A

0DataRank · unranked

75 citations

Mǎng Shī, Aeron C. Hurt, Marcel Klaassen, Edward C. Holmes, Michelle Wille

Sequence dynamics of three influenza A virus strains grown in different MDCK cell lines, including those expressing different sialic acid receptors

Journal of Evolutionary Biology(2021)10.1111/jeb.13890

N/A

0DataRank · unranked

8 citations

Brian R. Wasik, Brynn K. Alford, Jessica J. Hayward, Wendy S. Weichert, Ian E. H. Voorhees +3 more

Genomic epidemiology reveals the impact of national and international restrictions measures on the SARS-CoV-2 epidemic in Brazil

medRxiv(2021)10.1101/2021.10.07.21264644

N/A

0DataRank · unranked

5 citations

Svetoslav Nanev Slavov, Vagner Fonseca, Eduan Wilkinson, Houriiyah Tegally, José Salvatore Leister Patané +95 more

Slippery when wet: cross-species transmission of divergent coronaviruses in bony and jawless fish and the evolutionary history of the Coronaviridae

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.22.436364

N/A

0DataRank · unranked

0 citations

Jonathon C. O. Mifsud, Vincenzo A. Costa, Rebecca M. Grimwood, Jane Kitson, Cindy F. Baker +6 more

The Origins of SARS-CoV-2: A Critical Review

The Sydney eScholarship Repository (The University of Sydney)(2021)10.5281/zenodo.13531717

N/A

0DataRank · unranked

0 citations

Stephen A. Goldstein, Angela L. Rasmussen, David L. Robertson, Alexander Crits-Cristoph, Wertheim, Joel O +16 more

The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic

Science(2022)10.1126/science.abp8715

N/A

0DataRank · unranked

437 citations

Joshua I. Levy, Lorena M. Malpica Serrano, Alexander Crits‐Christoph, Jonathan E. Pekar, Stephen A. Goldstein +13 more

The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

Science(2022)10.1126/science.abp8337

N/A

0DataRank · unranked

251 citations

Andrew F. Magee, Edyth Parker, Niema Moshiri, Katherine Izhikevich, Jennifer L. Havens +24 more

Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil

Nature Microbiology(2022)10.1038/s41564-022-01191-z

N/A

0DataRank · unranked

111 citations

Svetoslav Nanev Slavov, Vagner Fonseca, Eduan Wilkinson, Houriiyah Tegally, José Salvatore Leister Patané +95 more

Australia as a global sink for the genetic diversity of avian influenza A virus

PLoS Pathogens(2022)10.1371/journal.ppat.1010150

N/A

0DataRank · unranked

22 citations

Victoria Grillo, Silvia Ban de Gouvea Pedroso, Graham Burgess, Allison Crawley, Celia Dickason +27 more

Divergent Evolutionary Pathways of Myxoma Virus in Australia: Virulence Phenotypes in Susceptible and Partially Resistant Rabbits Indicate Possible Selection for Transmissibility

Journal of Virology(2022)10.1128/jvi.00886-22

N/A

0DataRank · unranked

10 citations

Isabella M. Cattadori, Derek G. Sim, Jun’e Liu, Edward C. Holmes, Andrew F. Read +1 more

Individual bat virome analysis reveals co-infection and spillover among bats and virus zoonotic potential

Nature Communications(2023)10.1038/s41467-023-39835-1

N/A

0DataRank · unranked

110 citations

Yuanfei Pan, Lifen Yang, Weihong Yang, Kexin Lv, Chuming Luo +18 more

Rapid Epidemic Expansion of Chikungunya Virus East/Central/South African Lineage, Paraguay

Emerging infectious diseases(2023)10.3201/eid2909.230523

N/A

0DataRank · unranked

45 citations

Cynthia Vázquez, Maurício Lima, Emerson Castro, Analia Rojas, Andrea Gómez de la Fuente +35 more

Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil

Science Advances(2023)10.1126/sciadv.adg9204

N/A

0DataRank · unranked

40 citations

Francesco Pinotti, Camila Zanluca, Vagner Fonseca, Taishi Nakase, Andrea Cristine Koishi +89 more

Characterization of an Emergent Chicken H3N8 Influenza Virus in Southern China: a Potential Threat to Public Health

Journal of Virology(2023)10.1128/jvi.00434-23

N/A

0DataRank · unranked

25 citations

Ziying Jin, Liuxia Peng, Zuoyi Zheng, Yiu-Man Cheung, Jing Guan +19 more

Understanding the divergent evolution and epidemiology of H3N8 influenza viruses in dogs and horses

Virus Evolution(2023)10.1093/ve/vead052

N/A

0DataRank · unranked

20 citations

Evin Rothschild, Ian E. H. Voorhees, Stephanie E. Reedy, Pablo R. Murcia, Nicola Pusterla +6 more

Newly identified lineages of porcine hemagglutinating encephalomyelitis virus exhibit respiratory phenotype

Virus Evolution(2023)10.1093/ve/vead051

N/A

0DataRank · unranked

18 citations

Dongyan Li, Guy Baele, Jin Zhao, Zhiwen Jiang, Xiang Ji +7 more

Viral Capsid, Antibody, and Receptor Interactions: Experimental Analysis of the Antibody Escape Evolution of Canine Parvovirus

Journal of Virology(2023)10.1128/jvi.00090-23

N/A

0DataRank · unranked

8 citations

Oluwafemi F. Adu, Daniel J. Goetschius, Hyunwook Lee, Wendy S. Weichert, Brian R. Wasik +10 more

Nonsystematic Reporting Biases of the SARS-CoV-2 Variant Mu Could Impact Our Understanding of the Epidemiological Dynamics of Emerging Variants

Genome Biology and Evolution(2023)10.1093/gbe/evad052

N/A

0DataRank · unranked

2 citations

Carolina Lucas, Bridget L. Menasché, Mallery I. Breban, İnci Yıldırım, Melissa Campbell +9 more

Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.13.557637

N/A

0DataRank · unranked

13 citations

Joshua I. Levy, Jonathan E. Pekar, Stephen A. Goldstein, Reema Singh, Zach Hensel +17 more

Metagenomic analysis of individual mosquitos reveals the ecology of insect viruses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.28.555221

N/A

0DataRank · unranked

9 citations

Hailong Zhao, Qinyu Gou, Peibo Shi, Jun-Hua Tian, Yun Feng +38 more

Rapid epidemic expansion of chikungunya virus-ECSA lineage in Paraguay

medRxiv(2023)10.1101/2023.04.16.23288635

N/A

0DataRank · unranked

7 citations

Cynthia Vázquez, Maurício Lima, Emerson Castro, Analia Rojas, Andrea Gómez de la Fuente +35 more

Viral capsid, antibody, and receptor interactions: experimental analysis of the antibody escape evolution of canine parvovirus

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.18.524668

N/A

0DataRank · unranked

1 citations

Oluwafemi F. Adu, Daniel J. Goetschius, Hyunwook Lee, Wendy S. Weichert, Brian R. Wasik +10 more

Understanding the Divergent Evolution and Epidemiology of H3N8 Influenza Viruses in Dogs and Horses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.22.533763

N/A

0DataRank · unranked

1 citations

Evin Rothschild, Ian E. H. Voorhees, Stephanie E. Reedy, Pablo R. Murcia, Nicola Pusterla +6 more

Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

Cell(2024)10.1016/j.cell.2024.08.010

N/A

0DataRank · unranked

89 citations

Joshua I. Levy, Jonathan E. Pekar, Stephen A. Goldstein, Reema Singh, Zach Hensel +18 more

A new lineage nomenclature to aid genomic surveillance of dengue virus

PLoS Biology(2024)10.1371/journal.pbio.3002834

N/A

0DataRank · unranked

71 citations

Sara Cleemput, James Siqueira Pereira, Robert J. Gifford, Vagner Fonseca, Houriiyah Tegally +36 more

A virus associated with the zoonotic pathogen Plasmodium knowlesi causing human malaria is a member of a diverse and unclassified viral taxon

Virus Evolution(2024)10.1093/ve/veae091

N/A

0DataRank · unranked

2 citations

Justine Charon, Matthew J. Grigg, Timothy William, Giri Shan Rajahram, Jacob A. F. Westaway +5 more

Dynamics and ecology of a multi-stage expansion of Oropouche virus in Brazil

medRxiv(2024)10.1101/2024.10.29.24316328

N/A

0DataRank · unranked

15 citations

Simon Dellicour, Jenicca Poongavanan, Carla Mavian, Graeme Dor, Vagner Fonseca +15 more

A new lineage nomenclature to aid genomic surveillance of dengue virus

medRxiv(2024)10.1101/2024.05.16.24307504

N/A

0DataRank · unranked

10 citations

Sara Cleemput, Vagner Fonseca, Houriiyah Tegally, Anderson F. Brito, Robert J. Gifford +30 more

A virus associated with the zoonotic pathogen Plasmodium knowlesi causing human malaria is a member of a diverse and unclassified viral taxon

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.18.613759

N/A

0DataRank · unranked

1 citations

Justine Charon, Matthew J. Grigg, Timothy William, Giri Shan Rajahram, Jacob A. F. Westaway +5 more

Artificial intelligence for modelling infectious disease epidemics

Nature(2025)10.1038/s41586-024-08564-w

N/A

0DataRank · unranked

133 citations

Joseph L.-H. Tsui, Serina Chang, Spyros Lytras, Mark P. Khurana, Samantha Vanderslott +36 more

Extensive cross-species transmission of pathogens and antibiotic resistance genes in mammals neglected by public health surveillance

Cell(2025)10.1016/j.cell.2025.08.016

N/A

0DataRank · unranked

23 citations

Y Li, Haipeng Li, Ayidana Haerheng, Vanessa R. Marcelino, Meng Lu +14 more

Travel-associated international spread of Oropouche virus beyond the Amazon

Journal of Travel Medicine(2025)10.1093/jtm/taaf018

N/A

0DataRank · unranked

20 citations

Felicidade Mota Pereira, Elaine Cristina de Oliveira, Janete Taynã Nascimento Rodrigues, Mariza Hoffmann Machado, Vagner Fonseca +53 more

Recent advances in the inference of deep viral evolutionary history

Journal of Virology(2025)10.1128/jvi.00292-25

N/A

0DataRank · unranked

6 citations

Marc A. Suchard, Edward C. Holmes, Philippe Lemey, Jonathon C. O. Mifsud

Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived

Virus Evolution(2025)10.1093/ve/veaf008

N/A

0DataRank · unranked

5 citations

Niema Moshiri, Philippe Lemey, Alexander Crits‐Christoph, Florence Débarre, Stephen A. Goldstein +6 more

Reemergence of yellow fever virus in forest and periurban settings in Brazil

Communications Medicine(2025)10.1038/s43856-025-01287-7

N/A

0DataRank · unranked

2 citations

Talita Adelino, Vagner Fonseca, Keldenn Melo Farias Moreno, Luíz Marcelo Ribeiro Tomé, Luiz Augusto Pereira +29 more

Re-emergence of Yellow Fever Virus in Brazil: Evidence from Forest and peri-urban Settings

medRxiv(2025)10.1101/2025.04.10.25325467

N/A

0DataRank · unranked

3 citations

Talita Adelino, Vagner Fonseca, Keldenn Melo Farias Moreno, Luíz Marcelo Ribeiro Tomé, Luiz Augusto Pereira +29 more

A household case evidences shorter shedding of SARS-CoV-2 in naturally infected cats compared to their human owners

Emerging Microbes & Infections(2020)10.1080/22221751.2020.1863132

N/A

0DataRank · unranked

104 citations

Bárbara Brito, Belén Agüero, Felipe Berríos, Valentina Valdés, Alberto Artamendi Gutiérrez +17 more

Infectious KoRV-related retroviruses circulating in Australian bats

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1915400117

N/A

0DataRank · unranked

56 citations

Mary Tachedjian, Claudia Kohl, Adam Johnson, Megan Dearnley, Brianna Jesaveluk +17 more

Viral CpG Deficiency Provides No Evidence That Dogs Were Intermediate Hosts for SARS-CoV-2

Molecular Biology and Evolution(2020)10.1093/molbev/msaa178

N/A

0DataRank · unranked

20 citations

Todd A. Castoe, Blair W. Perry, Spyros Lytras, Kristen J. Wade, David L. Robertson +9 more

Identification of 2019-nCoV related coronaviruses in Malayan pangolins in southern China

The Sydney eScholarship Repository (The University of Sydney)(2020)10.1101/2020.02.13.945485

N/A

0DataRank · unranked

116 citations

Marcus Ho-Hin Shum, Huachen Zhu, Yigang Tong, Xue-Bing Ni, Yunshi Liao +9 more

Host age shapes virome abundance and diversity in birds

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.23.263103

N/A

0DataRank · unranked

1 citations

Mǎng Shī, Aeron C. Hurt, Marcel Klaassen, Edward C. Holmes, Michelle Wille