🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council , Paterna 46980,

ORCID: 0000-0001-9597-311X
Biochemistry, Genetics and Molecular BiologyChemistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
7.4Author DataRank

Indexed papers

7in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3
Top 8%
2.8DataRank
Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

Papers

Driven by 29 papers — median percentile 88. Top paper: “Systematic assessment of long-read RNA-seq methods for transcript identification and quantification”.

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3
Top 8%
2.8DataRank
Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases

Nucleic Acids Research(2022)10.1093/nar/gkac352
Top 10%
2.1DataRank
Top 10%100 citations

Pedro Salguero, Marko Petek, Carlos Martínez-Mira, Leandro Balzano‐Nogueira, Živa Ramšak +5 more

A roadmap for the functional annotation of protein families: a community perspective

Database(2022)10.1093/database/baac062
Top 14%
1.5DataRank
Top 14%63 citations

Rocío Amorín, Cecilia N. Arighi, Jill Babor, Alex Bateman, Ian K. Blaby +54 more

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

Bioinformatics(2005)10.1093/bioinformatics/bti610
N/A
1.4DataRank · unranked
12013 citations

Stefan Götz, Juan Miguel García-Gómez, Javier Terol, Manuel Talón, Montserrat Robles +5 more

Transcriptomics in the era of long-read sequencing

Nature Reviews Genetics(2025)10.1038/s41576-025-00828-z
N/A
1.0DataRank · unranked
91 citations

Tianyuan Liu, Ana Conesa, Carolina Monzó

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.25.550582
Top 20%
0.991DataRank
Top 20%28 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +78 more

SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms

Nature Methods(2024)10.1038/s41592-024-02229-2
N/A
0.789DataRank · unranked
191 citations

Ángeles Arzalluz-Luque, Liudmyla Kondratova, Pedro Salguero, Jorge Mestre‐Tomás, Rocío Amorín +7 more

Enhanced protein isoform characterization through long-read proteogenomics

Genome biology(2022)10.1186/s13059-022-02624-y
N/A
0.673DataRank · unranked
88 citations

Ben T. Jordan, Madison Mehlferber, Erin D. Jeffery, Christina Chatzipantsiou, Simi Kaur +11 more

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

Genome biology(2020)10.1186/s13059-020-02028-w
N/A
0.641DataRank · unranked
71 citations

Ángeles Arzalluz-Luque, Manuel Tardáguila, Héctor del Risco, Cristina Martí, Sonia Tarazona +11 more

Notable challenges posed by long-read sequencing for the study of transcriptional diversity and genome annotation

Genome Research(2025)10.1101/gr.279865.124
N/A
0.419DataRank · unranked
13 citations

Adam Frankish, Ana Conesa, Carolina Monzó

Biological databases in the age of generative artificial intelligence

Bioinformatics Advances(2024)10.1093/bioadv/vbaf044
N/A
0.418DataRank · unranked
8 citations

Teresa K. Attwood, Judith A. Blake, Philip E. Bourne, Ana Conesa, Terry Gaasterland +17 more

Quality assessment of long read data in multisample lrRNA-seq experiments using SQANTI-reads

Genome Research(2025)10.1101/gr.280021.124
N/A
0.409DataRank · unranked
11 citations

Carolina Monzó, Lauren M. McIntyre, Ana Conesa, Netanya Keil

Evaluation of strategies for evidence-driven genome annotation using long-read RNA-seq

Genome Research(2024)10.1101/gr.279864.124
N/A
0.390DataRank · unranked
9 citations

Cristina Agustin-García, Francisco J. Pardo-Palacios, Tom Brown, Maite De María, Nancy D. Denslow +3 more

Nucleotide-level distance metrics to quantify alternative splicing implemented in TranD

Nucleic Acids Research(2024)10.1093/nar/gkae056
N/A
0.312DataRank · unranked
7 citations

James Titus‐McQuillan, Kinfeosioluwa S Bankole, Francisco Pardo-Palacios, Sarah Signor, Srna Vlaho +6 more

Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes

Genome biology(2021)10.1186/s13059-021-02262-w
N/A
0DataRank · unranked
36 citations

Ricardo Ramirez, Tatyana Zamkovaya, Jordan Dailey, Alexandria N. Ardissone, Srikar Chamala +9 more

SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.17.541248
N/A
0DataRank · unranked
22 citations

Ángeles Arzalluz-Luque, Liudmyla Kondratova, Pedro Salguero, Jorge Mestre‐Tomás, Rocío Amorín +7 more

SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.23.554392
N/A
0DataRank · unranked
2 citations

Tianyuan Liu, Francisco J. Pardo-Palacios, Ana Conesa, Jorge Mestre‐Tomás

Identification of food and nutrient components as predictors of Lactobacillus colonization

Frontiers in Nutrition(2023)10.3389/fnut.2023.1118679
N/A
0DataRank · unranked
5 citations

Amanda Ford, Elijah Moothedan, Lauren S. Stafford, Timothy J. Garrett, Wendy J. Dahl +4 more

Flap-enabled next-generation capture (FENGC): precision targeted single-molecule profiling of epigenetic heterogeneity, chromatin dynamics, and genetic variation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.08.515732
N/A
0DataRank · unranked
4 citations

Nancy Nabilsi, Anqi Wang, Marie‐Pierre L. Gauthier, Kevin Murray, Hassan Azari +12 more

Steering research on mRNA splicing in cancer towards clinical translation

Nature reviews. Cancer(2024)10.1038/s41568-024-00750-2
N/A
0DataRank · unranked
40 citations

Frédéric H.‐T. Allain, Brittany Angarola, Douglas L. Black, Angela N. Brooks, Chonghui Cheng +14 more

GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson’s disease

Scientific Reports(2022)10.1038/s41598-022-07238-9
N/A
0DataRank · unranked
3 citations

Francisco Huertas, Alison M. Morse, Rachel Kaletsky, Coleen T. Murphy, Vrinda Kalia +5 more

SQANTI-reads: a tool for the quality assessment of long read data in multi-sample lrRNA-seq experiments

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.23.609463
N/A
0DataRank · unranked
5 citations

Carolina Monzó, Lauren M. McIntyre, Ana Conesa, Netanya Keil

acorde unravels functionally interpretable networks of isoform co-usage from single cell data

Nature Communications(2022)10.1038/s41467-022-29497-w
N/A
0DataRank · unranked
19 citations

Pedro Salguero, Sonia Tarazona, Ana Conesa, Ángeles Arzalluz-Luque

Independent phenotypic plasticity axes define distinct obesity sub-types

Nature Metabolism(2022)10.1038/s42255-022-00629-2
N/A
0DataRank · unranked
40 citations

Luca Fagnocchi, Stefanos Apostle, Vanessa Wegert, Salvador Casaní-Galdón, Kathrin Landgraf +38 more

To join or not to join: handling biological replicates in long-read RNA sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.09.693269
N/A
0DataRank · unranked
1 citations

Alejandro Paniagua, Stanley Cormack, Jorge Mestre‐Tomás, José Manuel Morante‐Redolat, Isabel Fariñas +5 more

Long reads decipher genomes and transcriptomes and offer novel insights into biology and diseases

Genome Research(2025)10.1101/gr.280665.125
N/A
0DataRank · unranked
0 citations

Alexander Hoischen, Fritz J. Sedlazeck, Ana Conesa

Ozone sensitivity of diverse maize genotypes is associated with differences in gene regulation, not gene content

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.06.442991
N/A
0DataRank · unranked
0 citations

Alison M. Morse, Jeremy R. B. Newman, Nicole E. Choquette, Jessica M. Wedow, Zihao Liu +5 more

Comparative analysis of single-cell RNA-seq protocols for transcript quantification

Comparative analysis of single-cell RNA-seq protocols for transcript quantification(2023)10.14293/gof.23.42
N/A
0DataRank · unranked
0 citations

Jan Baumbach, Markus List, Olga Tsoy, Ana Conesa, Chit Tong Lio

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Genome biology(2022)10.1186/s13059-022-02711-0
N/A
0DataRank · unranked
123 citations

Richard Kuo, Max Coulter, Cristiane P. G. Calixto, Juan Carlos Entizne, Wenbin Guo +34 more