Adam R. Abate

Also affiliated with University of California, San Francisco, La Jolla Bioengineering Institute, Massachusetts Institute of Technology

EngineeringBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 58 papers. Top paper: “Digital droplet PCR accurately quantifies SARS-CoV-2 viral load from crude lysate without nucleic acid purification”.

Digital droplet PCR accurately quantifies SARS-CoV-2 viral load from crude lysate without nucleic acid purification

Scientific Reports(2021)10.1038/s41598-020-80715-1

N/A

4.5DataRank · unranked

106 citations

Peng Xu, Venice Servellita, Steve Miller, Leqian Liu, Allan Gopez +3 more

Microfluidics-free single-cell genomics with templated emulsification

Nature Biotechnology(2023)10.1038/s41587-023-01685-z

N/A

4.2DataRank · unranked

218 citations

Kristina M. Fontanez, Robert H. Meltzer, Yi Xue, Corey E. Hayford, Aaron A. May‐Zhang +20 more

Multiplatform genomic profiling and magnetic resonance imaging identify mechanisms underlying intratumor heterogeneity in meningioma

Nature Communications(2020)10.1038/s41467-020-18582-7

N/A

2.7DataRank · unranked

129 citations

Harish N. Vasudevan, Kyounghee Seo, Javier Villanueva-Meyer, Abrar Choudhury, Siyuan Liu +18 more

Identification of astrocyte regulators by nucleic acid cytometry

Nature(2023)10.1038/s41586-022-05613-0

N/A

1.9DataRank · unranked

90 citations

Michael A. Wheeler, Hong‐Gyun Lee, Zhaorong Li, Liliana M. Sanmarco, Shravan Thaploo +16 more

Constrained chromatin accessibility in PU.1-mutated agammaglobulinemia patients

The Journal of Experimental Medicine(2021)10.1084/jem.20201750

N/A

1.7DataRank · unranked

75 citations

David N. Nguyen, Chun Su, Brian E. Nolan, Amanda V. Albrecht, Suela Xhani +40 more

Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage

Nature Immunology(2019)10.1038/s41590-018-0276-y

N/A

1.3DataRank · unranked

5174 citations

Agnieszka P. Looney, Leqian Liu, Esther Wu, Valerie Fong, Austin Hsu +8 more

Reference-based annotation of single cell transcriptomes identifies a profibrotic macrophage niche after tissue injury

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/284604

N/A

0.890DataRank · unranked

8 citations

Agnieszka P. Looney, Leqian Liu, Valerie Fong, Austin Hsu, Paul J. Wolters +5 more

Joint profiling of DNA and proteins in single cells to dissect genotype-phenotype associations in leukemia

Nature Communications(2021)10.1038/s41467-021-21810-3

N/A

0.673DataRank · unranked

88 citations

Cyrille L. Delley, Harish N. Vasudevan, Cheryl A.C. Peretz, David Ruff, Catherine C. Smith +2 more

Mapping enzyme catalysis with metabolic biosensing

Nature Communications(2021)10.1038/s41467-021-27185-9

N/A

0.553DataRank · unranked

39 citations

Kai‐Chun Chang, Emory M. Payne, Cyrus Modavi, Leqian Liu, Claire M. Palmer +6 more

Multiomic single cell sequencing identifies stemlike nature of mixed phenotype acute leukemia

Nature Communications(2024)10.1038/s41467-024-52317-2

N/A

0.537DataRank · unranked

17 citations

Vanessa E. Kennedy, Anushka Walia, Cyrille L. Delley, Andrew Koh, Elaine Tran +17 more

Linked optical and gene expression profiling of single cells at high-throughput

Genome biology(2020)10.1186/s13059-020-01958-9

N/A

0.489DataRank · unranked

25 citations

Christian Siltanen, Leqian Liu, Kai‐Chun Chang, Zev J. Gartner, Adam R. Abate +1 more

Functional interactions between neurofibromatosis tumor suppressors underlie Schwann cell tumor de-differentiation and treatment resistance

Nature Communications(2024)10.1038/s41467-024-44755-9

N/A

0.464DataRank · unranked

21 citations

Emily Payne, Cyrille L. Delley, Siyuan Liu, Kanish Mirchia, Matthew J. Sale +16 more

Precision ejection of microfluidic droplets into air with a superhydrophobic outlet

Lab on a Chip(2021)10.1039/d0lc01327g

N/A

0.464DataRank · unranked

21 citations

Kai‐Chun Chang, Adam R. Abate, Pengfei Zhang

Microfluidics-free single-cell genomics with templated emulsification

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.10.495582

N/A

0.449DataRank · unranked

19 citations

Kristina M. Fontanez, Robert H. Meltzer, Yi Xue, Corey E. Hayford, Aaron A. May‐Zhang +20 more

Myeloid-mesenchymal crosstalk drives ARG1-dependent profibrotic metabolism via ornithine in lung fibrosis

Journal of Clinical Investigation(2025)10.1172/jci188734

N/A

0.425DataRank · unranked

16 citations

Javier Gómez Ortega, Prerna Dabral, Whitney Tamaki, Charles Chien, K. C. Chang +30 more

Robotic automation of droplet microfluidics

Biomicrofluidics(2022)10.1063/5.0064265

N/A

0.416DataRank · unranked

15 citations

Samuel Kim, Cyrus Modavi, Adam R. Abate, Tuan M. Tran

Multiplatform Molecular Profiling Reveals Epigenomic Intratumor Heterogeneity in Ependymoma

Cell Reports(2020)10.1016/j.celrep.2020.01.018

N/A

0.406DataRank · unranked

14 citations

Stephen T. Magill, Harish N. Vasudevan, Stephanie Hilz, Javier Villanueva-Meyer, Sydney Lastella +14 more

Sequencing Ultrarare Targets with Compound Nucleic Acid Cytometry

Analytical Chemistry(2021)10.1021/acs.analchem.0c04749

N/A

0.333DataRank · unranked

5 citations

Kai‐Chun Chang, Adam R. Abate, Chen Sun

High diversity droplet microfluidic libraries generated with a commercial liquid spotter

Scientific Reports(2021)10.1038/s41598-021-83865-y

N/A

0.292DataRank · unranked

6 citations

Christian Siltanen, Ata Dolatmoradi, Chen Sun, Kai‐Chun Chang, Russell H. Cole +3 more

Multiomic Single Cell Sequencing Identifies Stemlike Nature of Mixed Phenotype Acute Leukemia and Provides Novel Risk Stratification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.15.540305

N/A

0.241DataRank · unranked

4 citations

Vanessa E. Kennedy, Anushka Walia, Cyrille L. Delley, Andrew Koh, Elaine Tran +12 more

Accurate bulk quantitation of droplet digital PCR

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.13.424628

N/A

0.165DataRank · unranked

2 citations

Leqian Liu, Harish N. Vasudevan, Kai‐Chun Chang, Adam R. Abate, Chen Sun

Controlled fabrication of functional liver spheroids with microfluidic flow cytometric printing

Biofabrication(2022)10.1088/1758-5090/ac8622

N/A

0DataRank · unranked

12 citations

Xiangpeng Li, Jennifer Y. Chen, Adam R. Abate, Pengfei Zhang

Rapid parallel generation of a fluorescently barcoded drop library from a microtiter plate using the plate-interfacing parallel encapsulation (PIPE) chip

Lab on a Chip(2022)10.1039/d2lc00909a

N/A

0DataRank · unranked

5 citations

Ralph A. Sperling, Carter W. Hoffman, Dimitri A. Bikos, Reha Abbasi, Adam R. Abate +3 more

Dual‐layered hydrogels allow complete genome recovery with nucleic acid cytometry

Biotechnology Journal(2022)10.1002/biot.202100483

N/A

0DataRank · unranked

6 citations

Cyrus Modavi, Peng Xu, Daniel W. Weisgerber, Adam R. Abate, Makiko N. Hatori

Polyhedral Particles with Controlled Concavity by Indentation Templating

Analytical Chemistry(2022)10.1021/acs.analchem.1c04884

N/A

0DataRank · unranked

2 citations

Makiko N. Hatori, Xiangpeng Li, Adam R. Abate, Daniel W. Weisgerber

HIV silencing and cell survival signatures in infected T cell reservoirs

Nature(2023)10.1038/s41586-022-05556-6

N/A

0DataRank · unranked

118 citations

Prakriti Mudvari, Shravan Thaploo, S. Abigail Smith, Mohammad Abu‐Laban, Mehdi S. Hamouda +20 more

Droplet-based forward genetic screening of astrocyte–microglia cross-talk

Science(2023)10.1126/science.abq4822

N/A

0DataRank · unranked

118 citations

Iain C. Clark, Hong‐Gyun Lee, Zhaorong Li, Mathias Linnerbauer, Joseph M. Rone +26 more

Printhead on a chip: empowering droplet-based bioprinting with microfluidics

Trends in biotechnology(2023)10.1016/j.tibtech.2023.09.001

N/A

0DataRank · unranked

29 citations

Congying Liu, Cyrus Modavi, Adam R. Abate, Huawei Chen, Pengfei Zhang

Viral load quantitation at the point-of-care with shaken digital droplet RT-LAMP

Lab on a Chip(2023)10.1039/d3lc00096f

N/A

0DataRank · unranked

6 citations

Krzysztof Langer, Venice Servellita, Peng Xu, Charles Y. Chiu, Adam R. Abate +1 more

Flow cytometric printing of double emulsions into open droplet arrays

Lab on a Chip(2023)10.1039/d3lc00151b

N/A

0DataRank · unranked

10 citations

Linfeng Xu, Huawei Chen, Adam R. Abate, Pengfei Zhang

Main Manuscript for Microbiome single cell atlases generated with a benchtop instrument

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.08.551713

N/A

0DataRank · unranked

8 citations

Linfeng Xu, Benjamin Demaree, Cecilia Noecker, Jordan E. Bisanz, Daniel W. Weisgerber +4 more

FIND-seq: high-throughput nucleic acid cytometry for rare single-cell transcriptomics

Nature Protocols(2024)10.1038/s41596-024-01021-y

N/A

0DataRank · unranked

11 citations

Prakriti Mudvari, Shravan Thaploo, Michael A. Wheeler, Daniel C. Douek, Francisco J. Quintana +4 more

Microbiome Single Cell Atlases Generated with a Commercial Instrument

Advanced Science(2025)10.1002/advs.202409338

N/A

0DataRank · unranked

2 citations

Linfeng Xu, Benjamin Demaree, Cecilia Noecker, Jordan E. Bisanz, Daniel W. Weisgerber +4 more

High-Throughput Antibody Neutralization Screening in Massively Parallel Droplet Arrays

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.31.635965

N/A

0DataRank · unranked

1 citations

Ahmed S. Fahad, Cyrille L. Delley, Cheng-Yu Chung, Shuyan Jin, Nicoleen Boyle +16 more

Comprehensive Cross-Domain Taxonomic Classification of Microbiotas using Partitioned Amplification Multiplexed Amplicon Sequencing (PAMA-seq)

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.18.660470

N/A

0DataRank · unranked

0 citations

Kai Trepka, Fangchao Song, Than S. Kyaw, Peter J. Turnbaugh, Adam R. Abate +1 more

Deterministic Cell Pairing with Simultaneous Microfluidic Merging and Sorting of Droplets

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.27.662036

N/A

0DataRank · unranked

0 citations

Sophia Dateshidze, Seung Won Shin, Adam R. Abate, Iain C. Clark, Kevin M. Joslin

Deterministic cell pairing with simultaneous microfluidic merging and sorting of droplets

Lab on a Chip(2025)10.1039/d5lc00627a

N/A

0DataRank · unranked

0 citations

Sophia Dateshidze, Seung Won Shin, Adam R. Abate, Iain C. Clark, Kevin M. Joslin

Microbowls with Controlled Concavity for Accurate Microscale Mass Spectrometry

Advanced Materials(2022)10.1002/adma.202108194

N/A

0DataRank · unranked

11 citations

Xiangpeng Li, Wenzong Li, Kai‐Chun Chang, Hyunjun Yang, Nannan Tao +7 more

High‐Definition Single‐Cell Printing: Cell‐by‐Cell Fabrication of Biological Structures

Advanced Materials(2020)10.1002/adma.202005346

N/A

0DataRank · unranked

75 citations

Adam R. Abate, Pengfei Zhang

Microfluidic automated plasmid library enrichment for biosynthetic gene cluster discovery

Nucleic Acids Research(2020)10.1093/nar/gkaa131

N/A

0DataRank · unranked

16 citations

Cyrus Modavi, Benjamin Demaree, Frederick F. Twigg, Benjamin Liang, Chen Sun +3 more

High Throughput Yeast Strain Phenotyping with Droplet-Based RNA Sequencing

Journal of Visualized Experiments(2020)10.3791/61014

N/A

0DataRank · unranked

3 citations

Kai‐Chun Chang, Leqian Liu, Zev J. Gartner, Adam R. Abate, Jesse Q. Zhang

High Throughput Yeast Strain Phenotyping with Droplet-Based RNA Sequencing

Journal of Visualized Experiments(2020)10.3791/61014-v

N/A

0DataRank · unranked

1 citations

K. C. Chang, Leqian Liu, Zev J. Gartner, Adam R. Abate, Jesse Q. Zhang

Joint profiling of DNA and proteins in single cells to dissect genotype-phenotype associations in leukemia

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.26.967133

N/A

0DataRank · unranked

18 citations

Cyrille L. Delley, Harish N. Vasudevan, Cheryl A.C. Peretz, David Ruff, Catherine C. Smith +2 more

Digital droplet PCR accurately quantifies SARS-CoV-2 viral load from crude lysate without nucleic acid purification

medRxiv(2020)10.1101/2020.09.02.20186023

N/A

0DataRank · unranked

8 citations

Peng Xu, Venice Servellita, Steve Miller, Leqian Liu, Allan Gopez +3 more

Modular barcode beads for microfluidic single cell genomics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.10.292326

N/A

0DataRank · unranked

5 citations

Adam R. Abate, Cyrille L. Delley

Droplet microfluidic sequencing of HIV genomes and integration sites

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.25.314120

N/A

0DataRank · unranked

3 citations

Leqian Liu, Liliana Pérez, Xiangpeng Li, Yifan Liu, Peng Xu +4 more

Sequencing ultra-rare targets with compound nucleic acid cytometry

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.01.278275

N/A

0DataRank · unranked

1 citations

Kai‐Chun Chang, Adam R. Abate, Chen Sun

Barcoded viral tracing of single-cell interactions in central nervous system inflammation

Science(2021)10.1126/science.abf1230

N/A

0DataRank · unranked

287 citations

Cristina Gutiérrez‐Vázquez, Michael A. Wheeler, Zhaorong Li, Veit Rothhammer, Mathias Linnerbauer +26 more

Modular barcode beads for microfluidic single cell genomics

Scientific Reports(2021)10.1038/s41598-021-90255-x

N/A

0DataRank · unranked

33 citations

Adam R. Abate, Cyrille L. Delley

Accurate Bulk Quantitation of Droplet Digital Polymerase Chain Reaction

Analytical Chemistry(2021)10.1021/acs.analchem.1c00877

N/A

0DataRank · unranked

33 citations

Leqian Liu, Harish N. Vasudevan, Kai‐Chun Chang, Adam R. Abate, Chen Sun

Simple, Affordable, and Modular Patterning of Cells using DNA

Journal of Visualized Experiments(2021)10.3791/61937

N/A

0DataRank · unranked

12 citations

David M. Patterson, Olivia J. Scheideler, Russell H. Cole, Adam R. Abate, David V. Schaffer +3 more

The chromatin repressors EZH2 and Suv4‐20h coregulate cell fate specification during hippocampal development

FEBS Letters(2021)10.1002/1873-3468.14254

N/A

0DataRank · unranked

3 citations

Christopher T. Rhodes, Jesse Q. Zhang, Madeleine C. Moseley, Sandra M. Cardona, Shu‐Wei Angela Huang +6 more

Particle Templated Emulsification enables Microfluidic-Free Droplet Assays

Journal of Visualized Experiments(2021)10.3791/62248

N/A

0DataRank · unranked

1 citations

Makiko N. Hatori, Adam R. Abate, Daniel W. Weisgerber

Simple, Affordable, and Modular Patterning of Cells using DNA

Journal of Visualized Experiments(2021)10.3791/61937-v

N/A

0DataRank · unranked

1 citations

David M. Patterson, Olivia J. Scheideler, Russell Cole, Adam R. Abate, David V. Schaffer +3 more

Age-dependent Effect Imposed by Rotenone Exposure

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.01.466812

N/A

0DataRank · unranked

0 citations

Ashley Rawls, Valerie M. Sponsel, Mitchel S. Berger, Adam R. Abate, Chin‐Hsing Annie Lin +1 more

Particle Templated Emulsification enables Microfluidic-Free Droplet Assays

Journal of Visualized Experiments(2021)10.3791/62248-v

N/A

0DataRank · unranked

0 citations

Makiko N. Hatori, Adam R. Abate, Daniel W. Weisgerber

Characterizing cell interactions at scale with made-to-order droplet ensembles (MODEs)

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2110867119

N/A

0DataRank · unranked

57 citations

Nathan G. Schoepp, Linfeng Xu, Codian S. Powell, Cyrille L. Delley, Christian Siltanen +5 more

Scalable Microbial Strain Inference in Metagenomic Data Using StrainFacts

Frontiers in Bioinformatics(2022)10.3389/fbinf.2022.867386

N/A

0DataRank · unranked

21 citations

Xiangpeng Li, Zhou Jason Shi, Adam R. Abate, Katherine S. Pollard, Byron J. Smith