Gabriela K. Fragiadakis

Also affiliated with Clinton Health Access Initiative, Creative Research, University of California San Francisco Medical Center, Institute of Biomedical Science, University of San Francisco

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.782Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101079

Top 26%

0.782DataRank

Top 26%53 citations

Slim Fourati, Naresh Doni Jayavelu, Ravi K. Patel, Cole Maguire, Ana C. Chang +95 more

Papers

Driven by 46 papers — median percentile 74. Top paper: “Gut-microbiota-targeted diets modulate human immune status”.

Gut-microbiota-targeted diets modulate human immune status

Cell(2021)10.1016/j.cell.2021.06.019

N/A

4.5DataRank · unranked

1304 citations

Gabriela K. Fragiadakis, Dalia Perelman, Dylan Dahan, Bryan D. Merrill, Feiqiao B. Yu +10 more

Discovering dominant tumor immune archetypes in a pan-cancer census

Cell(2021)10.1016/j.cell.2021.12.004

N/A

4.2DataRank · unranked

176 citations

Bushra Samad, Jessica Tsui, Nayvin W. Chew, Peter Yan, Gabriella C. Reeder +75 more

Long-term dietary intervention reveals resilience of the gut microbiota despite changes in diet and weight

American Journal of Clinical Nutrition(2020)10.1093/ajcn/nqaa046

N/A

3.8DataRank · unranked

138 citations

Hannah C. Wastyk, Jennifer L. Robinson, Erica D. Sonnenburg, Justin L. Sonnenburg, Christopher D. Gardner +1 more

Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis

Nature Communications(2024)10.1038/s41467-024-45665-6

N/A

1.1DataRank · unranked

56 citations

Yang Joon Kim, Gyehyun Lee, I Rusu, Ravi K. Patel, Leah C. Dorman +26 more

Integrated longitudinal multiomics study identifies immune programs associated with acute COVID-19 severity and mortality

Journal of Clinical Investigation(2024)10.1172/jci176640

N/A

0.910DataRank · unranked

32 citations

Cole Maguire, Ravi K. Patel, Pramod Shinde, Anna Konstorum, Casey P. Shannon +38 more

dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit

Bioinformatics(2020)10.1093/bioinformatics/btaa1011

N/A

0.834DataRank · unranked

259 citations

Jared Andrews, Gabriela K. Fragiadakis, Trevor D. Burt, Marina Sirota, Daniel Bunis

Single-cell RNA-seq analysis reveals cell subsets and gene signatures associated with Rheumatoid Arthritis Disease Activity

JCI Insight(2024)10.1172/jci.insight.178499

N/A

0.790DataRank · unranked

41 citations

Brenda Y. Miao, Camilla Wibrand, Monica M. Yang, Dmitry Rychkov, Emily Flynn +18 more

Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101079

Top 26%

0.782DataRank

Top 26%53 citations

Slim Fourati, Naresh Doni Jayavelu, Ravi K. Patel, Cole Maguire, Ana C. Chang +95 more

Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS

Nature Communications(2021)10.1038/s41467-021-25040-5

N/A

0.661DataRank · unranked

81 citations

Stephanie A. Christenson, Ashley Byrne, Eran Mick, Angela Oliveira Pisco, Catherine DeVoe +89 more

Features of acute COVID-19 associated with post-acute sequelae of SARS-CoV-2 phenotypes: results from the IMPACC study

Nature Communications(2024)10.1038/s41467-023-44090-5

N/A

0.617DataRank · unranked

60 citations

Naresh Doni Jayavelu, Shanshan Liu, Esther Melamed, Carly E. Milliren, Jingjing Qi +95 more

Microbial dynamics and pulmonary immune responses in COVID-19 secondary bacterial pneumonia

Nature Communications(2024)10.1038/s41467-024-53566-x

N/A

0.549DataRank · unranked

16 citations

Alexandra Tsitsiklis, Victoria Chu, Hoang Van Phan, Catherine DeVoe, Christina Love +87 more

IgM N-glycosylation correlates with COVID-19 severity and rate of complement deposition

Nature Communications(2024)10.1038/s41467-023-44211-0

N/A

0.505DataRank · unranked

28 citations

Kyra Woloszczuk, Jintong Hou, Jennifer Connors, Gina Cusimano, Matthew R. Bell +94 more

Global Absence and Targeting of Protective Immune States in Severe COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.28.359935

N/A

0.489DataRank · unranked

25 citations

Tristan Courau, Nicholas F. Kuhn, Kenneth H. Hu, Arja Ray, William S. Chen +34 more

Cell‐Specific Transposable Element and Gene Expression Analysis Across Systemic Lupus Erythematosus Phenotypes

ACR Open Rheumatology(2024)10.1002/acr2.11713

N/A

0.312DataRank · unranked

7 citations

Sarah L. Patterson, Lenka Maliskova, Kimberly E. Taylor, Chun Jimmie Ye, Maria Dall’Era +8 more

Integrated longitudinal multi-omics study identifies immune programs associated with COVID-19 severity and mortality in 1152 hospitalized participants

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.03.565292

N/A

0.269DataRank · unranked

5 citations

Cole Maguire, Ravi K. Patel, Pramod Shinde, Anna Konstorum, Casey P. Shannon +40 more

Single-cell omics technologies – Fundamentals on how to create single-cell looking glasses for reproductive health

American Journal of Obstetrics and Gynecology(2025)10.1016/j.ajog.2024.08.041

N/A

0.241DataRank · unranked

4 citations

Brittany Davidson, Gabriela K. Fragiadakis, Marina Sirota, Brice Gaudillière, Alexis J. Combes +1 more

Single-Cell Multiomics

Annual Review of Biomedical Data Science(2023)10.1146/annurev-biodatasci-020422-050645

N/A

0DataRank · unranked

38 citations

Ana Almonte-Loya, Gabriela K. Fragiadakis, Emily Flynn

SARS-CoV-2 infection of airway organoids reveals conserved use of Tetraspanin-8 by Ancestral, Delta, and Omicron variants

Stem Cell Reports(2023)10.1016/j.stemcr.2023.01.011

N/A

0DataRank · unranked

14 citations

Samantha Little, Kayla Kulhanek, Mélia Magnen, Kriti Bahl, Oghenekevwe M. Gbenedio +37 more

A myeloid program associated with COVID-19 severity is decreased by therapeutic blockade of IL-6 signaling

iScience(2023)10.1016/j.isci.2023.107813

N/A

0DataRank · unranked

12 citations

Haridha Shivram, Jason A. Vander Heiden, Christopher C. Overall, Luz D. Orozco, Xia Gao +95 more

Homeostatic cytokines reciprocally modulate the emergence of prenatal effector PLZF+CD4+ T cells in humans

JCI Insight(2023)10.1172/jci.insight.164672

N/A

0DataRank · unranked

4 citations

Sara Park, Daniel Bunis, Stephanie Makredes, Margareta Mayer, Trevor D. Burt +3 more

Commensal myeloid crosstalk in neonatal skin regulates cutaneous type 17 inflammation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.29.560039

N/A

0DataRank · unranked

4 citations

Ricardo O. Carale, Andrea M. DeRogatis, Henry Rodriguez-Valbuena, Joy N. Okoro, Christina Ekstrand +21 more

Distinct pulmonary and systemic effects of dexamethasone in severe COVID-19

Research Square(2023)10.21203/rs.3.rs-3168149/v1

N/A

0DataRank · unranked

3 citations

Lucile Neyton, Ravi K. Patel, Aartik Sarma, Andrew Willmore, Sidney C. Haller +9 more

Host-microbe multiomic profiling reveals age-dependent immune dysregulation associated with COVID-19 immunopathology

Science Translational Medicine(2024)10.1126/scitranslmed.adj5154

N/A

0DataRank · unranked

25 citations

Alexandra Tsitsiklis, Cole Maguire, Elias K. Haddad, Patrice M. Becker, Seunghee Kim‐Schulze +95 more

Coordinated immune dysregulation in juvenile dermatomyositis revealed by single-cell genomics

JCI Insight(2024)10.1172/jci.insight.176963

N/A

0DataRank · unranked

14 citations

Camilla Wibrand, Emily Flynn, George C. Hartoularos, Yang Sun, Chioma J. Madubata +7 more

Distinct pulmonary and systemic effects of dexamethasone in severe COVID-19

Nature Communications(2024)10.1038/s41467-024-49756-2

N/A

0DataRank · unranked

19 citations

Ravi K. Patel, Aartik Sarma, K. Mark Ansel, Stephanie A. Christenson, Michael Adkisson +75 more

Single-cell spatial transcriptomics of fixed, paraffin-embedded biopsies reveals colitis-associated cell networks

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.11.623014

N/A

0DataRank · unranked

0 citations

Madison L. Lotstein, Gyehyun Lee, Vrinda Johri, Christina Ekstrand, Jessica Tsui +10 more

Host-microbe multiomic profiling identifies distinct COVID-19 immune dysregulation in solid organ transplant recipients

Nature Communications(2025)10.1038/s41467-025-55823-z

N/A

0DataRank · unranked

6 citations

Joanna Schaenman, Hoang Van Phan, Cole Maguire, Alexandra Tsitsiklis, Nadine Rouphael +93 more

Discovery of tissue-specific proteomic signatures in juvenile dermatomyositis highlights pathways reflecting persistent disease activity, clinical heterogeneity, and myositis-specific autoantibody subtype

Annals of the Rheumatic Diseases(2025)10.1016/j.ard.2025.07.020

N/A

0DataRank · unranked

1 citations

Sara E. Sabbagh, Jeffrey Dvergsten, Chioma J. Madubata, Céline C. Berthier, Zilan Zheng +9 more

Epigenetic attenuation of interferon signaling drives aging-related improvements in systemic lupus

medRxiv(2025)10.1101/2025.01.27.25321143

N/A

0DataRank · unranked

0 citations

Hoang Van Phan, Sarah L. Patterson, Ana Laura Almonte Loya, Cristina M. Lanata, Christina Love +19 more

Deciphering Cell-types and Gene Signatures Associated with Disease Activity in Rheumatoid Arthritis using Single Cell RNA-sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.05.560352

N/A

0DataRank · unranked

0 citations

B. Y. Miao, C. Wibrand, M.M. Yang, D. Rychkov, E. Flynn +31 more

Clinical cure of chronic hepatitis B is dependent on activation and perpetuation of robust CD4 + T cell responses

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.29.677401

N/A

0DataRank · unranked

0 citations

Lia Avanesyan, Jean Publicover, Nicholas D. Carey, Ravi K. Patel, Austin Edwards +21 more

Identification d’une signature en Single Cell transcriptomique associée à l’activité de la maladie dans la polyarthrite rhumatoïde

Revue du Rhumatisme(2023)10.1016/j.rhum.2023.10.039

N/A

0DataRank · unranked

0 citations

C. Wibrand, M. Yang, D. Rychkov, E. Flynn, J. Nititham +31 more

Landscape of coordinated immune responses to H1N1 challenge in humans

Journal of Clinical Investigation(2020)10.1172/jci137265

N/A

0DataRank · unranked

53 citations

Rebecca Leylek, Christian M. Schürch, Han Chen, Zach Bjornson-Hooper, Shannon Christensen +18 more

Gut Microbiota-Targeted Diets Modulate Human Immune Status

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.30.321448

N/A

0DataRank · unranked

87 citations

Gabriela K. Fragiadakis, Dalia Perelman, Dylan Dahan, Bryan D. Merrill, Feiqiao B. Yu +8 more

Global Absence and Targeting of Protective Immune States in Severe COVID-19.

Research Square(2020)10.21203/rs.3.rs-97042/v1

N/A

0DataRank · unranked

8 citations

Alexis J. Combes, Tristan Courau, Nicholas F. Kuhn, Kenneth H. Hu, Arja Ray +34 more

Expression of specific inflammasome gene modules stratifies older individuals into two extreme clinical and immunological states

UNC Libraries(2020)10.17615/hwxa-sr80

N/A

0DataRank · unranked

0 citations

David Furman, Lydia Lartigue, Matthew H. Spitzer, Gabriela K. Fragiadakis, Jean‐François Moreau +15 more

Global absence and targeting of protective immune states in severe COVID-19

Nature(2021)10.1038/s41586-021-03234-7

N/A

0DataRank · unranked

279 citations

Tristan Courau, Nicholas F. Kuhn, Kenneth H. Hu, Arja Ray, William S. Chen +60 more

Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19

Science Translational Medicine(2021)10.1126/scitranslmed.abh2624

N/A

0DataRank · unranked

239 citations

Sara E. Vazquez, George C. Hartoularos, Paul Bastard, Tianna Grant, Raymund Bueno +40 more

Increased risk of severe clinical course of COVID-19 in carriers of HLA-C*04:01

EClinicalMedicine(2021)10.1016/j.eclinm.2021.101099

N/A

0DataRank · unranked

101 citations

Phillip Suwalski, Manuel Holtgrewe, Alexander Rakitko, Charlotte Thibeault, Melina Müller +64 more

Longitudinal single-cell epitope and RNA-sequencing reveals the immunological impact of type 1 interferon autoantibodies in critical COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.09.434529

N/A

0DataRank · unranked

29 citations

Sara E. Vazquez, George C. Hartoularos, Paul Bastard, Tianna Grant, Raymund Bueno +40 more

Sex-stratified single-cell RNA-Seq analysis identifies sex-specific and cell type-specific transcriptional responses in Alzheimer’s disease across two brain regions.

Research Square(2021)10.21203/rs.3.rs-418653/v1

N/A

0DataRank · unranked

4 citations

Yaqiao Li, Daniel Bunis, Arjun A. Rao, Caroline Warly Solsberg, Alice Tang +5 more

A Comprehensive Atlas of Immunological Differences Between Humans, Mice, and Non-Human Primates

Frontiers in Immunology(2022)10.3389/fimmu.2022.867015

N/A

0DataRank · unranked

195 citations

Gabriela K. Fragiadakis, Matthew H. Spitzer, Han Chen, Deepthi Madhireddy, Kevin Hu +4 more

Plasma SARS-CoV-2 nucleocapsid antigen levels are associated with progression to severe disease in hospitalized COVID-19

Critical Care(2022)10.1186/s13054-022-04153-3

N/A

0DataRank · unranked

39 citations

Aleksandra Leligdowicz, Andrew Willmore, Sidney Carrillo, Rajani Ghale, Alejandra Jáuregui +34 more

Mass cytometry reveals a conserved immune trajectory of recovery in hospitalized COVID-19 patients

Immunity(2022)10.1016/j.immuni.2022.06.004

N/A

0DataRank · unranked

27 citations

Trine Line Hauge Okholm, Iliana Tenvooren, Diana M. Marquez, Stanley Tamaki, Priscila Muñoz Sandoval +54 more

Variation of Immune Cell Responses in Humans Reveals Sex-Specific Coordinated Signaling Across Cell Types

Frontiers in Immunology(2022)10.3389/fimmu.2022.867016

N/A

0DataRank · unranked

7 citations

Zachary B. Bjornson-Hooper, Deepthi Madhireddy, Karen Sachs, Han Chen, David R. McIlwain +4 more

A myeloid program associated with COVID-19 severity is decreased by therapeutic blockade of IL-6 signaling

medRxiv(2022)10.1101/2022.11.07.22282049

N/A

0DataRank · unranked

0 citations

Haridha Shivram, Jason A. Vander Heiden, Christopher C. Overall, Luz D. Orozco, Xia Gao +49 more

Gabriela K. Fragiadakis

Indexed papers

Top data-sharing exemplar

Papers