Thomas F. Rogers

Also affiliated with International AIDS Vaccine Initiative, Ragon Institute of MGH, MIT and Harvard, University of California San Diego

MedicineAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 37 papers. Top paper: “Structural basis of a shared antibody response to SARS-CoV-2”.

Structural basis of a shared antibody response to SARS-CoV-2

Science(2020)10.1126/science.abd2321

N/A

12.8DataRank · unranked

700 citations

Hejun Liu, Nicholas C. Wu, Chang‐Chun D. Lee, Xueyong Zhu, Fangzhu Zhao +11 more

Discovery of a Novel Inhibitor of Coronavirus 3CL Protease for the Potential Treatment of COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.12.293498

N/A

5.5DataRank · unranked

159 citations

Rhys Jones, Brandon J. Anson, Dan Arenson, Lisa Aschenbrenner, Malina A. Bakowski +44 more

Rapid isolation of potent SARS-CoV-2 neutralizing antibodies and protection in a small animal model

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.11.088674

N/A

3.5DataRank · unranked

59 citations

Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wanting He +25 more

Adult stem cell-derived complete lung organoid models emulate lung disease in COVID-19

eLife(2021)10.7554/elife.66417

N/A

3.1DataRank · unranked

136 citations

Mackenzie Fuller, Ayden G. Fonseca, Sahar Taheri, Stella‐Rita Ibeawuchi, Nathan Beutler +16 more

Animal models for COVID-19

Nature(2020)10.1038/s41586-020-2787-6

N/A

1.0DataRank · unranked

879 citations

William E. Dowling, Simon G. P. Funnell, Pierre-S. Gsell, A. Ximena Riveros-Balta, Randy A. Albrecht +59 more

Preclinical characterization of an intravenous coronavirus 3CL protease inhibitor for the potential treatment of COVID19

Nature Communications(2021)10.1038/s41467-021-26239-2

N/A

0.855DataRank · unranked

297 citations

Rhys Jones, Brandon J. Anson, Dan Arenson, Lisa Aschenbrenner, Malina A. Bakowski +47 more

Structural basis of a public antibody response to SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.08.141267

N/A

0.489DataRank · unranked

25 citations

Hejun Liu, Nicholas C. Wu, Chang‐Chun D. Lee, Xueyong Zhu, Fangzhu Zhao +11 more

A single-administration therapeutic interfering particle reduces SARS-CoV-2 viral shedding and pathogenesis in hamsters

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2204624119

N/A

0.477DataRank · unranked

23 citations

Nathan Beutler, Gustavo Vasen, Michael Pablo, Xinyue Chen, Giuliana Calia +6 more

Microfluidics combined with electron microscopy for rapid and high-throughput mapping of antibody–viral glycoprotein complexes

Nature Biomedical Engineering(2025)10.1038/s41551-025-01411-x

N/A

0.345DataRank · unranked

9 citations

Rebeca de Paiva Fróes Rocha, Grace Gibson, Michelle Louie, Zhenfei Xie, Sandhya Bangaru +12 more

A single-administration therapeutic interfering particle reduces SARS-CoV-2 viral shedding and pathogenesis in hamsters

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.10.503534

N/A

0.165DataRank · unranked

2 citations

Nathan Beutler, Michael Pablo, Gustavo Vasen, Xinyue Chen, Giuliana Calia +6 more

Antiviral drug screen identifies DNA-damage response inhibitor as potent blocker of SARS-CoV-2 replication

Cell Reports(2021)10.1016/j.celrep.2021.108940

N/A

0DataRank · unranked

119 citations

Arun Sharma, Arunachalam Ramaiah, Chandani Sen, Arunima Purkayastha, Donald B. Kohn +23 more

Identification of a therapeutic interfering particle—A single-dose SARS-CoV-2 antiviral intervention with a high barrier to resistance

Cell(2021)10.1016/j.cell.2021.11.004

N/A

0DataRank · unranked

82 citations

Gustavo Vasen, Michael Pablo, Xinyue Chen, Nathan Beutler, Arjun J. Kumar +13 more

AI-guided discovery of the invariant host response to viral pandemics

EBioMedicine(2021)10.1016/j.ebiom.2021.103390

N/A

0DataRank · unranked

54 citations

Gajanan D. Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo +17 more

A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.30.437769

N/A

0DataRank · unranked

54 citations

Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang +18 more

Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.05.451222

N/A

0DataRank · unranked

12 citations

Meng Yuan, Sean Callaghan, Rami Musharrafieh, Ge Song, Murillo Silva +29 more

Ultrapotent bispecific antibodies neutralize emerging SARS-CoV-2 variants

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.01.437942

N/A

0DataRank · unranked

10 citations

Kristina Kay Gonzales-Wartz, Deli Huang, Meng Yuan, Mary Peterson, Janie Liang +35 more

Targeted isolation of panels of diverse human protective broadly neutralizing antibodies against SARS-like viruses

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.08.459480

N/A

0DataRank · unranked

6 citations

Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V. Tse, David R. Martinez +24 more

A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection

Science Translational Medicine(2022)10.1126/scitranslmed.abi9215

N/A

0DataRank · unranked

198 citations

Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang +18 more

Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses

Nature Immunology(2022)10.1038/s41590-022-01222-1

N/A

0DataRank · unranked

65 citations

Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V. Tse, David R. Martinez +24 more

A novel CSP C-terminal epitope targeted by an antibody with protective activity against Plasmodium falciparum

PLoS Pathogens(2022)10.1371/journal.ppat.1010409

N/A

0DataRank · unranked

37 citations

Tossapol Pholcharee, David Oyen, Yevel Flores-García, Randall S. MacGill, Elijah Garcia +17 more

Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques

Science Translational Medicine(2022)10.1126/scitranslmed.abl9605

N/A

0DataRank · unranked

35 citations

Meng Yuan, Sean Callaghan, Rami Musharrafieh, Ge Song, Murillo Silva +33 more

Targeted protein S-nitrosylation of ACE2 inhibits SARS-CoV-2 infection

Nature Chemical Biology(2022)10.1038/s41589-022-01149-6

N/A

0DataRank · unranked

35 citations

Tomohiro Nakamura, Nathan Beutler, Xu Zhang, Juan Piña-Crespo, Maria Talantova +24 more

Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses

UNC Libraries(2022)10.17615/0537-g119

N/A

0DataRank · unranked

0 citations

Ge Song, Nathan Beutler, Panpan Zhou, Thomas F. Rogers, Katharina Dueker +24 more

Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease

Immunity(2023)10.1016/j.immuni.2023.02.005

N/A

0DataRank · unranked

168 citations

Ge Song, Hejun Liu, Meng Yuan, Wanting He, Nathan Beutler +27 more

Deep repertoire mining uncovers ultra-broad coronavirus neutralizing antibodies targeting multiple spike epitopes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.28.534602

N/A

0DataRank · unranked

2 citations

Thomas F. Rogers, David B. Jaffe, Bruce A. Adams, Sandhya Bangaru, Elijah Garcia +15 more

An unnatural amino acid dependent, conditional Pseudomonas vaccine prevents bacterial infection

Nature Communications(2024)10.1038/s41467-024-50843-7

N/A

0DataRank · unranked

15 citations

Yen‐Chung Lai, Minseob Koh, Christian S. Diercks, Thomas F. Rogers, David A. Dik +2 more

Deep repertoire mining uncovers ultra-broad coronavirus neutralizing antibodies targeting multiple spike epitopes

Cell Reports(2024)10.1016/j.celrep.2024.114307

N/A

0DataRank · unranked

17 citations

Thomas F. Rogers, David B. Jaffe, Bruce A. Adams, Sandhya Bangaru, Elijah Garcia +17 more

Directed evolution of a stem-helix–targeting antibody enables MERS-CoV cross-neutralization through enhanced binding affinity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.02.680065

N/A

0DataRank · unranked

0 citations

Meng Yuan, Yuexiu Zhang, Oliver Limbo, Ge Song, Fangzhu Zhao +15 more

Development of a multi-antigenic SARS-CoV-2 vaccine candidate using a synthetic poxvirus platform

Nature Communications(2020)10.1038/s41467-020-19819-1

N/A

0DataRank · unranked

104 citations

Marcela D Salazar, Heidi Contreras, Vu H. Nguyen, Joy Martinez, Yoonsuh Park +15 more

Structural Basis of Zika Virus Specific Neutralization in Subsequent Flavivirus Infections

Viruses(2020)10.3390/v12121346

N/A

0DataRank · unranked

12 citations

Thomas F. Rogers, Andrew S. Miller, Feng Long, Thomas Klose, Nathan Beutler +8 more

Cross-reactive serum and memory B cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.22.308965

N/A

0DataRank · unranked

97 citations

Wanting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts +16 more

Adult Stem Cell-derived Complete Lung Organoid Models Emulate Lung Disease in COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.17.344002

N/A

0DataRank · unranked

37 citations

Mackenzie Fuller, Ayden G. Fonseca, Sahar Taheri, Stella‐Rita Ibeawuchi, Nathan Beutler +16 more

AI-guided discovery of the invariant host response to viral pandemics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.21.305698

N/A

0DataRank · unranked

12 citations

Gajanan D. Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo +17 more

Machine Learning Models Identify Inhibitors of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.16.154765

N/A

0DataRank · unranked

11 citations

Phyo Phyo Kyaw Zin, Daniel H. Foil, Jean Bernatchez, Sungjun Beck, Nathan Beutler +12 more

Cross-reactive serum and memory B-cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection

Nature Communications(2021)10.1038/s41467-021-23074-3

N/A

0DataRank · unranked

298 citations

Wanting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts +16 more

Bispecific antibodies targeting distinct regions of the spike protein potently neutralize SARS-CoV-2 variants of concern

Science Translational Medicine(2021)10.1126/scitranslmed.abj5413

N/A

0DataRank · unranked

138 citations

Kristina Kay Gonzales-Wartz, Deli Huang, Meng Yuan, Mary Peterson, Janie Liang +35 more

Drug repurposing screens identify chemical entities for the development of COVID-19 interventions

Nature Communications(2021)10.1038/s41467-021-23328-0

N/A

0DataRank · unranked

130 citations

Nathan Beutler, Karen C. Wolff, Melanie G. Kirkpatrick, Emily Chen, Tu-Trinh Nguyen +27 more