Ellen F. Foxman

MedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 18 papers. Top paper: “Dynamic innate immune response determines susceptibility to SARS-CoV-2 infection and early replication kinetics”.

Dynamic innate immune response determines susceptibility to SARS-CoV-2 infection and early replication kinetics

The Journal of Experimental Medicine(2021)10.1084/jem.20210583

N/A

6.6DataRank · unranked

220 citations

Timothy A. Watkins, Valia T. Mihaylova, Bao Wang, Dejian Zhao, Guilin Wang +3 more

Magnitude and timing of the antiviral response determine SARS-CoV-2 replication early in infection

medRxiv(2021)10.1101/2021.01.22.21249812

N/A

0.913DataRank · unranked

11 citations

Timothy A. Watkins, Valia T. Mihaylova, Bao Wang, Dejian Zhao, Guilin Wang +3 more

Causal identification of single-cell experimental perturbation effects with CINEMA-OT

Nature Methods(2023)10.1038/s41592-023-02040-5

N/A

0.661DataRank · unranked

81 citations

Bao Wang, Jessica Wei, Antonio H. de O. Fonseca, Curtis J. Perry, Alexander Frey +6 more

Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.06.081695

N/A

0.635DataRank · unranked

68 citations

Mia Madel Alfajaro, Victor Gasque, Victoria Habet, Jin Wei, Renata B. Filler +16 more

Viral Interference During Influenza A–SARS-CoV-2 Coinfection of the Human Airway Epithelium and Reversal by Oseltamivir

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad402

N/A

0.533DataRank · unranked

34 citations

Timothy A. Watkins, Valia T. Mihaylova, Ellen F. Foxman, Nagarjuna R. Cheemarla

Complement Plays a Critical Role in Inflammation-Induced Immunoprophylaxis Failure in Mice

Frontiers in Immunology(2021)10.3389/fimmu.2021.704072

N/A

0.312DataRank · unranked

7 citations

Manjula Santhanakrishnan, Jingchun Liu, David R. Gibb, James E. Forsmo, Ellen F. Foxman +7 more

What can be learned from viral co-detection studies in human populations

medRxiv(2023)10.1101/2023.06.17.23291541

N/A

0DataRank · unranked

2 citations

Ellen F. Foxman, Timothy A. Watkins, Marc Lipsitch, Taylor Chin

High burden of viruses and bacterial pathobionts drives heightened nasal innate immunity in children with and without SARS-CoV-2

medRxiv(2023)10.1101/2023.06.17.23291498

N/A

0DataRank · unranked

1 citations

Nagarjuna R. Cheemarla, Katrin Hänsel, Alex B. Green, Julien A R Amat, Richard Lozano +5 more

High burden of viruses and bacterial pathobionts drives heightened nasal innate immunity in children

The Journal of Experimental Medicine(2024)10.1084/jem.20230911

N/A

0DataRank · unranked

18 citations

Alex B. Green, Julien A R Amat, Nagarjuna R. Cheemarla, Katrin Hänsel, Richard Lozano +6 more

Considerations for viral co-infection studies in human populations

mBio(2024)10.1128/mbio.00658-24

N/A

0DataRank · unranked

17 citations

Ellen F. Foxman, Timothy A. Watkins, Marc Lipsitch, Taylor Chin

Detection of Live Attenuated Measles Virus in the Respiratory Tract Following Subcutaneous Measles-Mumps-Rubella Vaccination

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae537

N/A

0DataRank · unranked

5 citations

Jacqueline Brockhurst, Gregory Germain, Diane E. Griffin, Ellen F. Foxman, Timothy A. Watkins

An in vivo atlas of host–pathogen transcriptomes during Streptococcus pneumoniae colonization and disease

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2010428117

N/A

0DataRank · unranked

67 citations

Ashleigh N. Riegler, Eriel Martínez, Sarah M. Beno, Tiffany D. Ricketts, Ellen F. Foxman +3 more

Nasal biomarker testing to rule out viral respiratory infection and triage samples: a test performance study

EBioMedicine(2025)10.1016/j.ebiom.2025.105820

N/A

0DataRank · unranked

4 citations

Sarah Dudgeon, Nagarjuna R. Cheemarla, Timothy A. Watkins, Alex B. Green, H. P. Young +5 more

Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes

PLoS Biology(2021)10.1371/journal.pbio.3001143

N/A

0DataRank · unranked

282 citations

Mia Madel Alfajaro, Victor Gasque, Nicholas C. Huston, Han Wan, Klara Szigeti‐Buck +22 more

Viral interference cannot be concluded from datasets containing only symptomatic patients – Authors' reply

The Lancet Microbe(2021)10.1016/s2666-5247(20)30218-4

N/A

0DataRank · unranked

2 citations

Valia T. Mihaylova, Marie L. Landry, Ellen F. Foxman, Anchi Wu

Nasal host response-based screening for undiagnosed respiratory viruses: a pathogen surveillance and detection study

The Lancet Microbe(2022)10.1016/s2666-5247(22)00296-8

N/A

0DataRank · unranked

31 citations

Amelia Hanron, Joseph R. Fauver, Jason Bishai, Timothy A. Watkins, Anderson F. Brito +10 more

Respiratory viruses: New frontiers—a Keystone Symposia report

Annals of the New York Academy of Sciences(2023)10.1111/nyas.14958

N/A

0DataRank · unranked

1 citations

Jie Sun, In Su Cheon, Andrew E. Vaughan, Ítalo A. Castro, Sydney Stein +22 more

Counterintuitive effect of antiviral therapy on influenza A-SARS-CoV-2 coinfection due to viral interference

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.07.527372

N/A

0DataRank · unranked

7 citations

Valia T. Mihaylova, Timothy A. Watkins, Ellen F. Foxman, Nagarjuna R. Cheemarla