🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Avi Srivastava

The Wistar Institute

ORCID: 0000-0001-9798-2079

Also affiliated with University of Pennsylvania

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
10.1Author DataRank

Indexed papers

6in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An integrated cell atlas of the lung in health and disease

Nature Medicine(2023)10.1038/s41591-023-02327-2
Top 4%
5.0DataRank
Top 4%781 citations

Ciro Ramírez-Suástegui, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov +87 more

Papers

Driven by 27 papers — median percentile 77. Top paper: “An integrated cell atlas of the lung in health and disease”.

An integrated cell atlas of the lung in health and disease

Nature Medicine(2023)10.1038/s41591-023-02327-2
Top 4%
5.0DataRank
Top 4%781 citations

Ciro Ramírez-Suástegui, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov +87 more

An integrated cell atlas of the human lung in health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.10.483747
Top 8%
2.8DataRank
Top 8%97 citations

Daniel Strobl, Luke Zappia, Nikolay S. Markov, Laure-Emmanuelle Zaragosi, Marie-Jeanne Arguel +77 more

Integrated analysis of multimodal single-cell data

Cell(2021)10.1016/j.cell.2021.04.048
N/A
1.4DataRank · unranked
15542 citations

Stephanie Hao, Erica Andersen-Nissen, William M. Mauck, Shiwei Zheng, Andrew Butler +23 more

Dictionary learning for integrative, multimodal and scalable single-cell analysis

Nature Biotechnology(2023)10.1038/s41587-023-01767-y
N/A
1.3DataRank · unranked
5061 citations

Tim Stuart, Madeline H. Kowalski, Saket Choudhary, Paul Hoffman, Austin Hartman +6 more

Single-cell chromatin state analysis with Signac

Nature Methods(2021)10.1038/s41592-021-01282-5
N/A
1.1DataRank · unranked
1887 citations

Avi Srivastava, Shaista Madad, Caleb A. Lareau, Rahul Satija, Tim Stuart

Considerations for building and using integrated single-cell atlases

Nature Methods(2024)10.1038/s41592-024-02532-y
N/A
1.0DataRank · unranked
52 citations

Avi Srivastava, Vladimir A. Shitov, Graham Heimberg, Maiia Schulman, Amanda J. Oliver +10 more

Best practices for single-cell analysis across modalities

Nature Reviews Genetics(2023)10.1038/s41576-023-00586-w
N/A
1.0DataRank · unranked
1013 citations

Anna Christina Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia +34 more

Single-cell reference mapping to construct and extend cell-type hierarchies

NAR Genomics and Bioinformatics(2023)10.1093/nargab/lqad070
Top 20%
1.0DataRank
Top 20%38 citations

Mohammad Lotfollahi, Daniel Strobl, Avi Srivastava, Marcel J.T. Reinders, Fabian Joachim Theis +2 more

The discovAIR project: a roadmap towards the Human Lung Cell Atlas

European Respiratory Journal(2022)10.1183/13993003.02057-2021
Top 25%
0.797DataRank
Top 25%26 citations

Laure-Emmanuelle Zaragosi, Elo Madissoon, Avi Srivastava, Alexandra B. Firsova, Elena De Domenico +36 more

Single-cell reference mapping to construct and extend cell-type hierarchies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.07.499109
Top 44%
0.423DataRank
Top 44%7 citations

Mohammad Lotfollahi, Daniel Strobl, Avi Srivastava, Marcel J.T. Reinders, Fabian Joachim Theis +2 more

Uncertainty Quantification for Atlas-Level Cell Type Transfer

arXiv (Cornell University)(2022)10.48550/arxiv.2211.03793
N/A
0.417DataRank · unranked
5 citations

Leon Hetzel, Giovanni Palla, Avi Srivastava, Malte D. Luecken, Fabian Joachim Theis +1 more

Exploratory electronic health record analysis with ehrapy

medRxiv(2023)10.1101/2023.12.11.23299816
N/A
0.178DataRank · unranked
2 citations

Philipp Ehmele, Tim Treis, Julius Upmeier zu Belzen, Altana Namsaraeva, Nastassya Horlava +15 more

An integrated cell atlas of the human lung in health and disease

Research Square(2022)10.21203/rs.3.rs-1438584/v1
Top 71%
0.127DataRank
Top 71%1 citations

Avi Srivastava, Daniel Strobl, Luke Zappia, Elo Madissoon, Nikolay S. Markov +80 more

Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets

Bioinformatics(2022)10.1093/bioinformatics/btac212
N/A
0DataRank · unranked
24 citations

Hirak Sarkar, Avi Srivastava, Kwangbom Choi, Rob Patro, Michael I. Love +1 more

EBV INFECTION OUTCOMES DETERMINED BY MONOCYTE AND T REG -DRIVEN IMMUNE DYNAMICS IN AN EX VIVO PBMC MODEL

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.20.689441
N/A
0DataRank · unranked
0 citations

Lauren N. MacMullen, Leonardo Josué Castro-Muñoz, Alina Gu, Jamie Bregman, Mary Campion +7 more

A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification

Bioinformatics(2020)10.1093/bioinformatics/btaa450
N/A
0DataRank · unranked
27 citations

Laraib Malik, Hirak Sarkar, Rob Patro, Avi Srivastava

Integrated analysis of multimodal single-cell data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.12.335331
N/A
0DataRank · unranked
485 citations

Stephanie Hao, Erica Andersen‐Nissen, William M. Mauck, Shiwei Zheng, Andrew Butler +20 more

Multimodal single-cell chromatin analysis with Signac

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.09.373613
N/A
0DataRank · unranked
164 citations

Avi Srivastava, Caleb A. Lareau, Rahul Satija, Tim Stuart

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.07.029967
N/A
0DataRank · unranked
3 citations

Avi Srivastava, Héctor Corrada Bravo, Michael I. Love, Rob Patro, Hirak Sarkar

A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.10.035899
N/A
0DataRank · unranked
2 citations

Laraib Malik, Hirak Sarkar, Rob Patro, Avi Srivastava

Compression of quantification uncertainty for scRNA-seq counts

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.06.189639
N/A
0DataRank · unranked
2 citations

Hirak Sarkar, Avi Srivastava, Naim U. Rashid, Rob Patro, Michael I. Love +1 more

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008585
N/A
0DataRank · unranked
76 citations

Avi Srivastava, Rob Patro, Michael Stadler, Charlotte Soneson

Compression of quantification uncertainty for scRNA-seq counts

Bioinformatics(2021)10.1093/bioinformatics/btab001
N/A
0DataRank · unranked
7 citations

Hirak Sarkar, Avi Srivastava, Naim U. Rashid, Rob Patro, Michael I. Love +1 more

Alevin-fry unlocks rapid, accurate, and memory-frugal quantification of single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.29.450377
N/A
0DataRank · unranked
13 citations

Mohsen Zakeri, Hirak Sarkar, Charlotte Soneson, Avi Srivastava, Rob Patro +1 more

Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.13.460120
N/A
0DataRank · unranked
6 citations

Avi Srivastava, Eleni P. Mimitou, Tim Stuart, Ivan Raimondi, Yuhan Hao +3 more

Airpart : Interpretable statistical models for analyzing allelic imbalance in single-cell datasets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.15.464546
N/A
0DataRank · unranked
1 citations

Hirak Sarkar, Avi Srivastava, Kwangbom Choi, Rob Patro, Michael I. Love +1 more

Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro

Nature Biotechnology(2022)10.1038/s41587-022-01250-0
N/A
0DataRank · unranked
106 citations

Avi Srivastava, Eleni P. Mimitou, Tim Stuart, Ivan Raimondi, Yuhan Hao +3 more