Margaret E. Johnson

EngineeringBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 26 papers. Top paper: “Speed limits of protein assembly with reversible membrane localization”.

Speed limits of protein assembly with reversible membrane localization

The Journal of Chemical Physics(2021)10.1063/5.0045867

N/A

0.648DataRank · unranked

28 citations

Margaret E. Johnson, Bhavya Mishra

Dynamin1 long- and short-tail isoforms exploit distinct recruitment and spatial patterns to form endocytic nanoclusters

Nature Communications(2024)10.1038/s41467-024-47677-8

N/A

0.396DataRank · unranked

13 citations

Kye Kudo, Rachel S. Gormal, Sevannah A. Ellis, Sikao Guo, Tristan P. Wallis +6 more

Structure of the HIV immature lattice allows for essential lattice remodeling within budded virions

eLife(2023)10.7554/elife.84881

N/A

0.373DataRank · unranked

11 citations

Ipsita Saha, Saveez Saffarian, Margaret E. Johnson, Si‐Kao Guo

Defects in the HIV immature lattice support essential lattice remodeling within budded virions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.21.517392

N/A

0.241DataRank · unranked

4 citations

Ipsita Saha, Saveez Saffarian, Margaret E. Johnson, Sikao Guo

Parallelization of particle-based reaction-diffusion simulations using MPI

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.06.627287

N/A

0.165DataRank · unranked

2 citations

Nenad Korolija, Kent Milfeld, Adip Jhaveri, Mankun Sang, Yue Moon Ying +2 more

Thermodynamics and free energy landscape of BAR-domain dimerization from molecular simulations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.09.418020

N/A

0.104DataRank · unranked

1 citations

Dhruw Maisuria, Matthew J. Varga, Dariush Mohammadyani, Margaret E. Johnson, Adip Jhaveri

Correction: A continuum membrane model can predict curvature sensing by helix insertion

Soft Matter(2021)10.1039/d1sm90225c

N/A

0DataRank · unranked

0 citations

Wade F. Zeno, Jeanne C. Stachowiak, Margaret E. Johnson, Yiben Fu

Large self-assembled clathrin lattices spontaneously disassemble without sufficient adaptor proteins

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009969

N/A

0DataRank · unranked

23 citations

Alexander J. Sodt, Margaret E. Johnson, Si‐Kao Guo

Integrating protein copy numbers with interaction networks to quantify stoichiometry in clathrin-mediated endocytosis

Scientific Reports(2022)10.1038/s41598-022-09259-w

N/A

0DataRank · unranked

14 citations

Meretta A. Hanson, David O. Holland, Margaret E. Johnson, Daisy Duan

Modeling membrane reshaping driven by dynamic protein assemblies

Current Opinion in Structural Biology(2022)10.1016/j.sbi.2022.102505

N/A

0DataRank · unranked

9 citations

Margaret E. Johnson, Yiben Fu

Secretion‐Catalyzed Assembly of Protein Biomaterials on a Bacterial Membrane Surface

Angewandte Chemie International Edition(2023)10.1002/anie.202305178

N/A

0DataRank · unranked

10 citations

Sea On Lee, Nitya Vissamsetti, Si‐Kao Guo, Margaret E. Johnson, Stephen D. Fried +1 more

GAGA zinc finger transcription factor searches chromatin by 1D-3D facilitated diffusion

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.14.549009

N/A

0DataRank · unranked

3 citations

Maryam Yamadi, Yiben Fu, Kaitlin M. Ness, Celina Liu, Ishtiyaq Ahmed +5 more

Discovering optimal kinetic pathways for self-assembly using automatic differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.30.555551

N/A

0DataRank · unranked

0 citations

Spencer Loggia, Yian Qian, Margaret E. Johnson, Adip Jhaveri

Discovering optimal kinetic pathways for self-assembly using automatic differentiation

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2403384121

N/A

0DataRank · unranked

19 citations

Spencer Loggia, Yian Qian, Margaret E. Johnson, Adip Jhaveri

Predicting protein curvature sensing across membrane compositions with a bilayer continuum model

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.15.575755

N/A

0DataRank · unranked

3 citations

David H. Johnson, Andrew H. Beaven, Alexander J. Sodt, Wade F. Zeno, Margaret E. Johnson +1 more

The PH domain in the ArfGAP ASAP1 drives catalytic activation through an unprecedented allosteric mechanism

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.20.629688

N/A

0DataRank · unranked

1 citations

Samuel L. Foley, Xiaoying Jian, Rebekah Jackson, Yue Zhang, Eric Rosenberg +7 more

GAGA zinc finger transcription factor searches chromatin by 1D–3D facilitated diffusion

Nature Structural & Molecular Biology(2025)10.1038/s41594-025-01643-0

N/A

0DataRank · unranked

13 citations

Maryam Yamadi, Yiben Fu, Kaitlin M. Ness, Celina Liu, Ishtiyaq Ahmed +5 more

Parallelization of Particle‐Based Reaction–Diffusion Simulations Using MPI

Journal of Computational Chemistry(2025)10.1002/jcc.70132

N/A

0DataRank · unranked

1 citations

Nenad Korolija, Kent Milfeld, Adip Jhaveri, Mankun Sang, Yue Moon Ying +2 more

An active allosteric mechanism in ASAP1-mediated Arf1 GTP hydrolysis redefines PH domain function

Nature Communications(2025)10.1038/s41467-025-63764-w

N/A

0DataRank · unranked

1 citations

Samuel L. Foley, Xiaoying Jian, Rebekah Jackson, Yue Zhang, Eric Rosenberg +8 more

NERDSS: A Nonequilibrium Simulator for Multibody Self-Assembly at the Cellular Scale

Biophysical Journal(2020)10.1016/j.bpj.2020.05.002

N/A

0DataRank · unranked

54 citations

Yiben Fu, Spencer Loggia, Osman N. Yoğurtçu, Margaret E. Johnson, Matthew J. Varga

Redefining PH Domain Function: An Active Allosteric Mechanism in ASAP1-Mediated Arf1 GTP Hydrolysis

Research Square(2025)10.21203/rs.3.rs-6702895/v1

N/A

0DataRank · unranked

0 citations

Olivier Soubias, Samuel L. Foley, Xiaoying Jian, Rebekah Jackson, Yue Zhang +8 more

Integrating protein copy numbers with interaction networks to quantify stoichiometry in mammalian endocytosis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.29.361196

N/A

0DataRank · unranked

4 citations

Meretta A. Hanson, David O. Holland, Margaret E. Johnson, Daisy Duan

The Roles of Space and Stochasticity in Computational Simulations of Cellular Biochemistry: Quantitative Analysis and Qualitative Insights

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.02.185595

N/A

0DataRank · unranked

1 citations

Athena Chen, James R. Faeder, Philipp Henning, Ion I Moraru, Martin Meier-Schellersheim +5 more

A continuum membrane model can predict curvature sensing by helix insertion

Soft Matter(2021)10.1039/d1sm01333e

N/A

0DataRank · unranked

14 citations

Wade F. Zeno, Jeanne C. Stachowiak, Margaret E. Johnson, Yiben Fu

Speed limits of protein assembly with reversible membrane localization

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.29.428888

N/A

0DataRank · unranked

3 citations

Margaret E. Johnson, Bhavya Mishra

A continuum membrane model predicts curvature sensing by helix insertion

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.22.440963

N/A

0DataRank · unranked

0 citations

Wade F. Zeno, Jeanne C. Stachowiak, Margaret E. Johnson, Yiben Fu