Katherine Rothamel

Also affiliated with Sanford Consortium for Regenerative Medicine

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 20 papers. Top paper: “Variation and Genetic Control of Gene Expression in Primary Immunocytes across Inbred Mouse Strains”.

Variation and Genetic Control of Gene Expression in Primary Immunocytes across Inbred Mouse Strains

The Journal of Immunology(2014)10.4049/jimmunol.1401280

N/A

1.9DataRank · unranked

47 citations

Adriana Ortiz-Lopez, Molly A. Bogue, Kimie Hattori, Cristina Pop, Daphne Koller +54 more

Polarization of the Effects of Autoimmune and Neurodegenerative Risk Alleles in Leukocytes

Science(2014)10.1126/science.1249547

N/A

0.948DataRank · unranked

556 citations

Sara Mostafavi, Chun Jimmie Ye, Mark N. Lee, Joseph M. Replogle, Ting Feng +22 more

Conservation and divergence in the transcriptional programs of the human and mouse immune systems

Proceedings of the National Academy of Sciences(2013)10.1073/pnas.1222738110

N/A

0.886DataRank · unranked

366 citations

the Immunological Genome Project Consortium, Or Zuk, Katherine Rothamel, David Puyraimond-Zemmour, Ting Feng +7 more

Parsing the Interferon Transcriptional Network and Its Disease Associations

Cell(2016)10.1016/j.cell.2015.12.032

N/A

0.877DataRank · unranked

345 citations

Hideyuki Yoshida, Devapregasan Moodley, Hugo LeBoité, Katherine Rothamel, Towfique Raj +17 more

A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer

Nature Communications(2023)10.1038/s41467-023-40798-6

N/A

0.546DataRank · unranked

37 citations

Tae Gyu Oh, Stefan Aigner, En‐Ching Luo, Brian A. Yee, Tania Campos +33 more

Proteomic discovery of chemical probes that perturb protein complexes in human cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.12.520090

N/A

0.373DataRank · unranked

11 citations

Jarrett R. Remsberg, Martin G. Jaeger, Katherine Rothamel, Hsuan-Lin Her, Kristen E. DeMeester +30 more

Proteomic discovery of chemical probes that perturb protein complexes in human cells

Molecular Cell(2023)10.1016/j.molcel.2023.03.026

N/A

0DataRank · unranked

94 citations

Jarrett R. Remsberg, Martin G. Jaeger, Katherine Rothamel, Hsuan-Lin Her, Kristen E. DeMeester +30 more

HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence

Molecular Cell(2023)10.1016/j.molcel.2023.06.019

N/A

0DataRank · unranked

51 citations

Kristopher W. Brannan, Katannya Kapeli, Samuel S. Park, Hui Tan, Maya L. Gosztyla +8 more

Large-scale map of RNA binding protein interactomes across the mRNA life-cycle

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.08.544225

N/A

0DataRank · unranked

8 citations

Katherine Rothamel, Kristopher W. Brannan, Wenhao Jin, Benjamin J. Bokor, Kevin Dong +13 more

Decoding protein–RNA interactions using CLIP-based methodologies

Nature Reviews Genetics(2024)10.1038/s41576-024-00749-3

N/A

0DataRank · unranked

44 citations

Danielle Schafer, Katherine Rothamel, G Yeo, Joy S. Xiang

Large-scale map of RNA-binding protein interactomes across the mRNA life cycle

Molecular Cell(2024)10.1016/j.molcel.2024.08.030

N/A

0DataRank · unranked

42 citations

Katherine Rothamel, Kristopher W. Brannan, Wenhao Jin, Benjamin J. Bokor, Kevin Dong +15 more

Mudskipper detects combinatorial RNA binding protein interactions in multiplexed CLIP data

Cell Genomics(2024)10.1016/j.xgen.2024.100603

N/A

0DataRank · unranked

1 citations

Katherine Rothamel, Grady G. Nguyen, Evan A. Boyle, G Yeo, Hsuan-Lin Her

Protocol to process crosslinking and immunoprecipitation data into annotated binding sites

STAR Protocols(2024)10.1016/j.xpro.2024.103040

N/A

0DataRank · unranked

1 citations

Grady G. Nguyen, Jack T. Naritomi, Hema Kopalle, Brian A. Yee, Katherine Rothamel +3 more

KIF5A binds RNA to orchestrate synaptic mRNA localization and stress granules in ALS

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.31.685813

N/A

0DataRank · unranked

1 citations

Neeraj Lal, Shuhao Xu, Sara Mumford, Megan Huang, Yang Dong +10 more

Genome-Wide Interrogation of SARS-CoV-2 RNA-Protein Interactions Uncovers Hidden Regulatory Sites

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.26.656146

N/A

0DataRank · unranked

0 citations

Karen X. Zhao, Laliv Tadri, Kurt Tamaru, Brian A. Yee, Katherine Rothamel +16 more

Discovery of Widespread Host Protein Interactions with the Pre-replicated Genome of CHIKV Using VIR-CLASP

Molecular Cell(2020)10.1016/j.molcel.2020.04.013

N/A

0DataRank · unranked

109 citations

Sarah Arcos, Katherine Rothamel, Jeffrey Jian, Kristie L. Rose, W. Hayes McDonald +7 more

ELAVL1 Primarily Couples mRNA Stability with the 3’UTRs of Interferon Stimulated Genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.24.263418

N/A

0DataRank · unranked

9 citations

Sarah Arcos, Byungil Kim, Clara Reasoner, Neelanjan Mukherjee, Manuel Ascano +1 more

Viral cross-linking and solid-phase purification enables discovery of ribonucleoprotein complexes on incoming RNA virus genomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.08.032441

N/A

0DataRank · unranked

5 citations

Sarah Arcos, Katherine Rothamel, Manuel Ascano, Byungil Kim

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.21.481223

N/A

0DataRank · unranked

4 citations

Jasmine R. Mueller, En‐Ching Luo, Brian A. Yee, Danielle Schafer, Jonathan C. Schmok +22 more

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

Research Square(2022)10.21203/rs.3.rs-1394331/v1

N/A

0DataRank · unranked

2 citations

Joy S. Xiang, Jasmine R. Mueller, En‐Ching Luo, Brian A. Yee, Danielle Schafer +24 more