Brian Firek

Also affiliated with Children's Hospital of Pittsburgh

Biochemistry, Genetics and Molecular BiologyNursingAgricultural and Biological SciencesMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 13 papers. Top paper: “Infant gut DNA bacteriophage strain persistence during the first 3 years of life”.

Infant gut DNA bacteriophage strain persistence during the first 3 years of life

Cell Host & Microbe(2023)10.1016/j.chom.2023.11.015

N/A

1.1DataRank · unranked

43 citations

LinXing Chen, Adair L. Borges, Jacob West-Roberts, Brian Firek, Michael J. Morowitz +2 more

Using strain-resolved analysis to identify contamination in metagenomics data

Microbiome(2023)10.1186/s40168-023-01477-2

N/A

0.542DataRank · unranked

36 citations

Jordan Hoff, Matthew R. Olm, Jacob West-Roberts, Spencer Diamond, Brian Firek +3 more

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics and proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.23.004093

N/A

0DataRank · unranked

0 citations

Samantha L. Peters, Matthew R. Olm, Feiqiao B. Yu, Yue Clare Lou, Brian Firek +6 more

Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100393

N/A

0DataRank · unranked

98 citations

Matthew R. Olm, Spencer Diamond, Alexander Crits‐Christoph, Brian Firek, Robyn Baker +3 more

Sustained Dysbiosis and Decreased Fecal Short-Chain Fatty Acids after Traumatic Brain Injury and Impact on Neurologic Outcome

Journal of Neurotrauma(2021)10.1089/neu.2020.7506

N/A

0DataRank · unranked

82 citations

Matthew B. Rogers, Brian Firek, Keri Janesko‐Feldman, Vincent Vagni, Steven J. Mullett +10 more

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

Microbiome(2021)10.1186/s40168-021-01085-y

N/A

0DataRank · unranked

25 citations

Samantha L. Peters, Matthew R. Olm, Feiqiao B. Yu, Haley Gause, Yue Clare Lou +7 more

Infant gut strain persistence is associated with maternal origin, phylogeny, and functional potential including surface adhesion and iron acquisition

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.26.428340

N/A

0DataRank · unranked

13 citations

Matthew R. Olm, Spencer Diamond, Alexander Crits‐Christoph, Brian Firek, Robyn Baker +3 more

Cyclic GMP‐AMP synthase contributes to epithelial homeostasis in intestinal inflammation via Beclin‐1‐mediated autophagy

The FASEB Journal(2022)10.1096/fj.202200138r

N/A

0DataRank · unranked

30 citations

Heather L. Mentrup, Elizabeth A. Novak, Vei Shaun Siow, Qian Wang, Erin C. Crawford +8 more

Using strain-resolved analysis to identify contamination in metagenomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.16.476537

N/A

0DataRank · unranked

8 citations

Jordan Hoff, Matthew R. Olm, Jacob West-Roberts, Spencer Diamond, Brian Firek +3 more

Epithelial NAD+ depletion drives mitochondrial dysfunction and contributes to intestinal inflammation

Frontiers in Immunology(2023)10.3389/fimmu.2023.1231700

N/A

0DataRank · unranked

26 citations

Erin C. Crawford, Heather Mentrup, Brian D. Griffith, David M. Fletcher, Meredith R. Flanagan +8 more

Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut

PLoS ONE(2020)10.1371/journal.pone.0229537

N/A

0DataRank · unranked

27 citations

Matthew R. Olm, Tali Raveh-Sadka, Christopher T. Brown, Ruth Sher, Brian Firek +4 more

Infant gut bacteriophage strain persistence during the first three years of life

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.07.552389

N/A

0DataRank · unranked

0 citations

LinXing Chen, Adair L. Borges, Jacob West-Roberts, Brian Firek, Michael J. Morowitz +2 more

InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.22.915579

N/A

0DataRank · unranked

24 citations

Alexander Crits‐Christoph, Keith Bouma‐Gregson, Brian Firek, Michael J. Morowitz, Jillian F. Banfield +1 more