John W. Hickey

Also affiliated with Duke Cancer Institute, Stanford University

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

4.6Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Anatomical structures, cell types and biomarkers of the Human Reference Atlas

Nature Cell Biology(2021)10.1038/s41556-021-00788-6

Top 8%

2.6DataRank

Top 8%123 citations

Sarah A. Teichmann, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland +31 more

Papers

Driven by 42 papers — median percentile 59. Top paper: “Strategies for Accurate Cell Type Identification in CODEX Multiplexed Imaging Data”.

Strategies for Accurate Cell Type Identification in CODEX Multiplexed Imaging Data

Frontiers in Immunology(2021)10.3389/fimmu.2021.727626

N/A

4.5DataRank · unranked

158 citations

Yuqi Tan, Garry P. Nolan, Yury Goltsev, John W. Hickey

Highly multiplexed tissue imaging using repeated oligonucleotide exchange reaction

European Journal of Immunology(2021)10.1002/eji.202048891

N/A

2.8DataRank · unranked

108 citations

Salil S. Bhate, John W. Hickey, Sarah Black, Graham L. Barlow, Gustavo Vazquez +6 more

Anatomical structures, cell types and biomarkers of the Human Reference Atlas

Nature Cell Biology(2021)10.1038/s41556-021-00788-6

Top 8%

2.6DataRank

Top 8%123 citations

Sarah A. Teichmann, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland +31 more

Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

Nature Cell Biology(2023)10.1038/s41556-023-01194-w

N/A

2.3DataRank · unranked

175 citations

Liming Pei, Jeffrey M. Spraggins, Michael Angelo, James P. Carson, Nils Gehlenborg +95 more

A spatial map of human macrophage niches reveals context-dependent macrophage functions in colon and breast cancer.

Research Square(2023)10.21203/rs.3.rs-2393443/v1

N/A

0.852DataRank · unranked

23 citations

John W. Hickey, Bogdan Luca, Guolan Lu, Łukasz Kidziński, Shirley Zhu +10 more

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage

Nature Methods(2025)10.1038/s41592-024-02563-5

Top 25%

0.802DataRank

Top 25%33 citations

Philip D. Blood, Jonathan C. Silverstein, Matthew Ruffalo, Rahul Satija, Sarah A. Teichmann +95 more

Integration of spatial and single-cell data across modalities with weakly linked features

Nature Biotechnology(2023)10.1038/s41587-023-01935-0

N/A

0.698DataRank · unranked

104 citations

Bokai Zhu, Sijia Huang, John W. Hickey, Kevin Lin, Michael P. Snyder +5 more

High Resolution Single Cell Maps Reveals Distinct Cell Organization and Function Across Different Regions of the Human Intestine

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.25.469203

N/A

0.671DataRank · unranked

17 citations

Winston R. Becker, Stephanie Nevins, Aaron M. Horning, Almudena Espín Pérez, Roxanne Chiu +20 more

Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging

Nature Methods(2021)10.1038/s41592-021-01316-y

N/A

0.470DataRank · unranked

22 citations

Elizabeth K. Neumann, Andrea J. Radtke, Jeannie M. Camarillo, Rebecca T. Beuschel, Alexandre Albanese +19 more

Annotation of Spatially Resolved Single-cell Data with STELLAR

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469947

N/A

0.464DataRank · unranked

21 citations

Kaidi Cao, John W. Hickey, Yuqi Tan, Michael P. Snyder, Garry P. Nolan +2 more

Segmentation of human functional tissue units in support of a Human Reference Atlas

Communications Biology(2023)10.1038/s42003-023-04848-5

Top 41%

0.462DataRank

Top 41%14 citations

Leah L. Godwin, Yingnan Ju, Naveksha Sood, Ellen M. Quardokus, Andreas Bueckle +10 more

An mRNA lipid nanoparticle-incorporated nanofiber-hydrogel composite for cancer immunotherapy

Nature Communications(2025)10.1038/s41467-025-61299-8

N/A

0.457DataRank · unranked

20 citations

Zhi‐Cheng Yao, Shuyi Li, Jingyao Ma, Christine Wei, Di Yu +22 more

A real-time GPU-accelerated parallelized image processor for large-scale multiplexed fluorescence microscopy data

Frontiers in Immunology(2022)10.3389/fimmu.2022.981825

N/A

0.425DataRank · unranked

16 citations

Marc A. Baertsch, John W. Hickey, Yury Goltsev, Andrew J. Rech, Lucas Mani +6 more

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.27.587041

Top 45%

0.407DataRank

Top 45%9 citations

Philip D. Blood, Jonathan C. Silverstein, Matthew Ruffalo, Rahul Satija, Sarah A. Teichmann +16 more

Rhesus Macaque CODEX Multiplexed Immunohistochemistry Panel for Studying Immune Responses During Ebola Infection

Frontiers in Immunology(2021)10.3389/fimmu.2021.729845

N/A

0.396DataRank · unranked

13 citations

Nilanjan Mukherjee, Richard S. Bennett, Han Chen, James Logue, Bonnie Dighero-Kemp +19 more

SPACEc: a streamlined, interactive Python workflow for multiplexed image processing and analysis

Nature Communications(2025)10.1038/s41467-025-65658-3

N/A

0.385DataRank · unranked

12 citations

Tim Kempchen, Martin Becker, Maximilian Haist, Dorien Feyaerts, Jiaqi Liu +9 more

Robust and generalizable segmentation of human functional tissue units

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.09.467810

Top 51%

0.346DataRank

Top 51%4 citations

Yingnan Ju, Naveksha Sood, Yashvardhan Jain, Ellen M. Quardokus, Andreas Bueckle +10 more

Concerted changes in Epithelium and Stroma: a multi-scale, multi-omics analysis of progression from Barrett’s Esophagus to adenocarcinoma

Developmental Cell(2025)10.1016/j.devcel.2025.06.034

N/A

0.345DataRank · unranked

9 citations

David L. Gibbs, Philippe Gascard, Joanna Bons, John W. Hickey, Deng Pan +37 more

Alterations of the composition and spatial organization of the microenvironment following non-dysplastic Barrett’s esophagus through progression to cancer

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.09.657642

N/A

0.208DataRank · unranked

3 citations

John W. Hickey, Adam M. Passman, Emanuela Carlotti, Shruthi Devkumar, Yannick Derwa +18 more

mRNA lipid nanoparticle-incorporated nanofiber-hydrogel composite generates a local immunostimulatory niche for cancer immunotherapy

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.27.633179

N/A

0.188DataRank · unranked

2 citations

Zhi‐Cheng Yao, S.-H. Li, Jingyao Ma, Christine Wei, Di Yu +22 more

MONTAGE: A Computation Framework to Identify Spatially Resolved Functional Enrichment Gradients in the Tissue Microenvironment via Spatial Communities

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.30.651486

N/A

0.104DataRank · unranked

1 citations

Zinaida Good, Marc A. Baertsch, Guolan Lu, John W. Hickey, Rachel Hildebrand +8 more

A Transient Immunostimulatory Niche Synergizes Adoptive and Endogenous Immunity for Enhanced Tumor Control

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.22.671875

N/A

0DataRank · unranked

1 citations

John H. Klich, Noah Eckman, Sophia J. Bailey, Karine Gillard, Daniel Ramos Mejia +5 more

Multicellular modules as clinical diagnostic and therapeutic targets

Trends in cancer(2021)10.1016/j.trecan.2021.11.004

N/A

0DataRank · unranked

17 citations

Garry P. Nolan, John W. Hickey, Marc-A. Baertsch

181 Intraepithelial group 1 innate lymphoid cells generated in vitro exhibit enhanced cytotoxicity and infiltration into solid tumoroids

Regular and Young Investigator Award Abstracts(2021)10.1136/jitc-2021-sitc2021.181

N/A

0DataRank · unranked

0 citations

John W. Hickey, John B. Sunwoo, Nina B. Horowitz

A spatial map of human macrophage niches links tissue location with function

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.18.504434

N/A

0DataRank · unranked

11 citations

John W. Hickey, Bogdan Luca, Guolan Lu, Łukasz Kidziński, Shirley Shu +10 more

Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging

Nature Methods(2023)10.1038/s41592-023-01846-7

N/A

0DataRank · unranked

45 citations

Diane C. Saunders, Elizabeth McDonough, John W. Hickey, Christopher Werlein, Christine Surrette +33 more

Shape matters: Biodegradable anisotropic nanoparticle artificial antigen presenting cells for cancer immunotherapy

Acta Biomaterialia(2023)10.1016/j.actbio.2023.02.023

N/A

0DataRank · unranked

33 citations

John W. Hickey, Randall A. Meyer, Ariel Isser, Sydney R. Shannon, Natalie K. Livingston +7 more

T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response

Cell Reports(2023)10.1016/j.celrep.2023.113494

N/A

0DataRank · unranked

32 citations

Maximillian Haist, Nina B. Horowitz, Chiara Caraccio, Yuqi Tan, Andrew J. Rech +11 more

Physioxia improves the selectivity of hematopoietic stem cell expansion cultures

Blood Advances(2023)10.1182/bloodadvances.2023009668

N/A

0DataRank · unranked

30 citations

Iwo Kucinski, Yan Yi Chan, Tze-Kai Tan, Hwei Minn Khoo, David Kealy +12 more

Integrating Multiplexed Imaging and Multiscale Modeling Identifies Tumor Phenotype Transformation as a Critical Component of Therapeutic T Cell Efficacy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.06.570168

N/A

0DataRank · unranked

1 citations

Eran Agmon, Nina B. Horowitz, Matthew Lamore, John B. Sunwoo, Markus W. Covert +2 more

Spatially Segregated Macrophage Populations Predict Distinct Outcomes in Colon Cancer

Cancer Discovery(2024)10.1158/2159-8290.cd-23-1300

N/A

0DataRank · unranked

148 citations

John W. Hickey, David G.P. van IJzendoorn, Guolan Lu, Łukasz Kidziński, Shirley Zhu +13 more

Integrating multiplexed imaging and multiscale modeling identifies tumor phenotype conversion as a critical component of therapeutic T cell efficacy

Cell Systems(2024)10.1016/j.cels.2024.03.004

N/A

0DataRank · unranked

25 citations

Eran Agmon, Nina B. Horowitz, Tze-Kai Tan, Matthew Lamore, John B. Sunwoo +3 more

In Vivo Stimulation of Therapeutic Antigen‐Specific T Cells in an Artificial Lymph Node Matrix

Advanced Materials(2024)10.1002/adma.202310043

N/A

0DataRank · unranked

21 citations

John W. Hickey, Hajin Sim, Sebastian F. Salathe, Joseph Choy, Jiayuan Kong +17 more

SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis

Bioinformatics(2024)10.1093/bioinformatics/btae412

N/A

0DataRank · unranked

10 citations

Kalen Clifton, Mayling Chen, Zhuoyan Li, Lyla Atta, Brendan Miller +4 more

Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

UNC Libraries(2024)10.17615/57gg-2n56

N/A

0DataRank · unranked

0 citations

Louise C. Laurent, Neil L. Kelleher, Huiping Liu, Weijun Qian, Mowei Zhou +21 more

High-throughput multiplexed serology via the mass-spectrometric analysis of isotopically barcoded beads

Nature Biomedical Engineering(2025)10.1038/s41551-025-01349-0

N/A

0DataRank · unranked

8 citations

David R. McIlwain, Alec E. Dallas, Theresa P. Chu, Antonio Delgado‐González, Maya Baron +24 more

Fusion of spatiotemporal and network models to prioritize multiscale effects in single-cell perturbations

Briefings in Bioinformatics(2025)10.1093/bib/bbaf277

N/A

0DataRank · unranked

3 citations

John W. Hickey, Benedict Anchang, Osafu Augustine Egbon

Comparative Evaluation of Antibody-Oligonucleotide Conjugation Strategies for Multiplexed Imaging Applications

Laboratory Investigation(2025)10.1016/j.labinv.2025.104262

N/A

0DataRank · unranked

1 citations

Josie van de Klashorst, Shelby Cherkas, Sara Ancel, Tim Noah Kempchen, Gustavo Vazquez +5 more

FUSION: a web-based application for in-depth exploration of multi-omics data with brightfield histology

Nature Communications(2025)10.1038/s41467-025-63050-9

N/A

0DataRank · unranked

1 citations

Ricardo Melo Ferreira, Nicholas Lucarelli, Suhas Katari Chaluva Kumar, Anindya S. Paul, David Manthey +21 more

Exploring endothelial cell environments across organs in spatially resolved omics data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.23.678129

N/A

0DataRank · unranked

3 citations

Jodie Jepson, Roy Chen, Elizabeth Maier, Bruce W. Herr, Aleix Puig-Barbe +24 more

A Spatial Multi-Omic Framework Identifies Gliomas Permissive to TIL Expansion

Research Square(2025)10.21203/rs.3.rs-6314842/v1

N/A

0DataRank · unranked

1 citations

Kelly Hotchkiss, Kenan Zhang, A Corcoran, Elizabeth B. Owens, Pamela Noldner +16 more

CODEX multiplexed tissue imaging with DNA-conjugated antibodies

Nature Protocols(2021)10.1038/s41596-021-00556-8

N/A

0DataRank · unranked

677 citations

Darci J. Phillips, John W. Hickey, Julia Kennedy‐Darling, Vishal G. Venkataraaman, Nikolay Samusik +4 more

John W. Hickey

Indexed papers

Top data-sharing exemplar

Papers