Joshua J. Coon

Also affiliated with Morgridge Institute for Research, Quantitative BioSciences

ChemistryBiochemistry, Genetics and Molecular BiologyEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

3.2Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Large-scale Multi-omic Analysis of COVID-19 Severity

medRxiv(2020)10.1101/2020.07.17.20156513

Top 7%

3.2DataRank

Top 7%82 citations

Evgenia Shishkova, Ian Miller, Joseph Balnis, Matthew N. Bernstein, Trenton M. Peters-Clarke +24 more

Papers

Driven by 125 papers — median percentile 93. Top paper: “Large-scale Multi-omic Analysis of COVID-19 Severity”.

Large-scale Multi-omic Analysis of COVID-19 Severity

medRxiv(2020)10.1101/2020.07.17.20156513

Top 7%

3.2DataRank

Top 7%82 citations

Evgenia Shishkova, Ian Miller, Joseph Balnis, Matthew N. Bernstein, Trenton M. Peters-Clarke +24 more

Multiplexed Quantification for Data-Independent Acquisition

Analytical Chemistry(2015)10.1021/ac503593d

N/A

2.5DataRank · unranked

51 citations

Alexander S. Hebert, Jarred W. Rensvold, Michael S. Westphall, David J. Pagliarini, Joshua J. Coon +1 more

The genetic basis of aneuploidy tolerance in wild yeast

eLife(2020)10.7554/elife.52063

N/A

2.4DataRank · unranked

93 citations

Leah E. Escalante, Katie J. Clowers, H Auguste Dutcher, DeElegant Robinson, Venera Bouriakov +4 more

Large-Scale Multi-omic Analysis of COVID-19 Severity

Cell Systems(2020)10.1016/j.cels.2020.10.003

N/A

0.969DataRank · unranked

639 citations

Evgenia Shishkova, Ian Miller, Joseph Balnis, Matthew N. Bernstein, Trenton M. Peters-Clarke +24 more

Recommendations for Biomarker Identification and Qualification in Clinical Proteomics

Science Translational Medicine(2010)10.1126/scitranslmed.3001249

N/A

0.872DataRank · unranked

334 citations

Günter Allmaier, Rolf Apweiler, Marc Baumann, Ariela Benigni, Samuel E. Bennett +57 more

An alphacoronavirus polymerase structure reveals conserved replication factor functions

Nucleic Acids Research(2024)10.1093/nar/gkae153

N/A

0.430DataRank · unranked

12 citations

Peter J Hoferle, Kennan Chojnacki, Kenneth W. Lee, Joshua J. Coon, Robert N. Kirchdoerfer +1 more

Aerobic and resistance exercise-regulated phosphoproteome and acetylproteome modifications in human skeletal muscle

Nature Communications(2025)10.1038/s41467-025-60049-0

N/A

0.413DataRank · unranked

12 citations

Carrie J. Heppelmann, Kyle J. Sevits, Aneesh K Asokan, Arathi Prabha Kumar, Katherine A. Klaus +9 more

MmuPV1 E6 induces cell proliferation and other hallmarks of cancer

mBio(2023)10.1128/mbio.02458-23

N/A

0.334DataRank · unranked

7 citations

Laura K. Muehlbauer, Mitchell Hayes, Miranda Grace, Evgenia Shishkova, Joshua J. Coon +3 more

Survival Following Traumatic Brain Injury in Drosophila Is Increased by Heterozygosity for a Mutation of the NF-κB Innate Immune Response Transcription Factor Relish

Genetics(2020)10.1534/genetics.120.303776

N/A

0DataRank · unranked

39 citations

Edna A. Trujillo, Gene H Thiede, Rebeccah J. Katzenberger, Evgenia Shishkova, Joshua J. Coon +3 more

Tailoring a Global Iron Regulon to a Uropathogen

mBio(2020)10.1128/mbio.00351-20

N/A

0DataRank · unranked

38 citations

Erin Weisenhorn, Kevin J. Schwartz, Kevin S. Myers, Jeremy D. Glasner, Nicole T. Perna +4 more

Argonaut: A Web Platform for Collaborative Multi-omic Data Visualization and Exploration

Patterns(2020)10.1016/j.patter.2020.100122

N/A

0DataRank · unranked

38 citations

Ian Miller, Nicholas W. Kwiecien, David J. Pagliarini, Michael S. Westphall, Joshua J. Coon +2 more

Phosphorylation controls RNA binding and transcription by the influenza virus polymerase

PLoS Pathogens(2020)10.1371/journal.ppat.1008841

N/A

0DataRank · unranked

33 citations

Gary M. Wilson, Elyse C. Freiberger, Arindam Mondal, Joshua J. Coon, Andrew Mehle +1 more

Decoding Polo-like kinase 1 signaling along the kinetochore–centromere axis

UNC Libraries(2020)10.17615/84qe-8317

N/A

0DataRank · unranked

1 citations

James M. Johnson, Edward D. Salmon, Aussie Suzuki, Mark E. Burkard, Gregory K. Potts +2 more

Proteomics, lipidomics, metabolomics and 16S DNA sequencing of dental plaque from patients with diabetes and periodontal disease

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.25.963967

N/A

0DataRank · unranked

7 citations

Timothy W. Rhoads, Anna E. Merrill, Zhan Ye, Michael S. Westphall, Amit Acharya +3 more

UbiB proteins regulate cellular CoQ distribution

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.09.418202

N/A

0DataRank · unranked

4 citations

Kyle Robinson, Jonathan M. Schmitz, Brett R. Paulson, Adam Jochem, Paul D. Hutchins +3 more

Peptide Identification and Quantification by Gas Phase Fractionation Enables Proteomics Without Liquid Chromatography

ChemRxiv(2020)10.26434/chemrxiv.12367376.v1

N/A

0DataRank · unranked

3 citations

Natalie M. Niemi, David J. Pagliarini, Joshua J. Coon, Jesse G. Meyer

Carbomer-based Nano-Emulsion Adjuvant Enhances Dendritic Cell Cross-presentation via Lipid Body Formation Independent of Glycolysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.08.083790

N/A

0DataRank · unranked

1 citations

Brock Kingstad-Bakke, Brett R. Paulson, Autumn Larsen, Katherine A. Overmyer, Chandranaik B. Marinaik +16 more

Multi-omic Single-Shot Technology for Integrated Proteome and Lipidome Analysis

Research Square(2020)10.21203/rs.3.rs-45548/v1

N/A

0DataRank · unranked

1 citations

Edrees H. Rashan, Vanessa Linke, Evgenia Shishkova, Alexander S. Hebert, Michael S. Westphall +4 more

Peptide Identification and Quantification by Gas Phase Fractionation Enables Proteomics Without Liquid Chromatography

ChemRxiv(2020)10.26434/chemrxiv.12367376

N/A

0DataRank · unranked

1 citations

Natalie M. Niemi, David J. Pagliarini, Joshua J. Coon, Jesse G. Meyer

Mapping of the contraction-induced phosphoproteome identifies TRIM28 as a significant regulator of skeletal muscle size and function

Cell Reports(2021)10.1016/j.celrep.2021.108796

N/A

0DataRank · unranked

55 citations

Gregory K. Potts, Gary M. Wilson, Amelia M. Klamen, Kuan‐Hung Lin, Jake B. Hermanson +4 more

Multi-Omic Single-Shot Technology for Integrated Proteome and Lipidome Analysis

Analytical Chemistry(2021)10.1021/acs.analchem.0c04764

N/A

0DataRank · unranked

41 citations

Edrees H. Rashan, Vanessa Linke, Evgenia Shishkova, Alexander S. Hebert, Adam Jochem +5 more

UbiB proteins regulate cellular CoQ distribution in Saccharomyces cerevisiae

Nature Communications(2021)10.1038/s41467-021-25084-7

N/A

0DataRank · unranked

46 citations

Kyle Robinson, Jonathan M. Schmitz, Mateusz Manicki, Brett R. Paulson, Adam Jochem +4 more

Proteomics, Lipidomics, Metabolomics, and 16S DNA Sequencing of Dental Plaque From Patients With Diabetes and Periodontal Disease

Molecular & Cellular Proteomics(2021)10.1016/j.mcpro.2021.100126

N/A

0DataRank · unranked

42 citations

Timothy W. Rhoads, Anna E. Merrill, Zhan Ye, Michael S. Westphall, Amit Acharya +3 more

Carbomer-based adjuvant elicits CD8 T-cell immunity by inducing a distinct metabolic state in cross-presenting dendritic cells

PLoS Pathogens(2021)10.1371/journal.ppat.1009168

N/A

0DataRank · unranked

35 citations

Brock Kingstad-Bakke, Brett R. Paulson, Autumn Larsen, Katherine A. Overmyer, Chandranaik B. Marinaik +16 more

A deep analysis of the proteomic and phosphoproteomic alterations that occur in skeletal muscle after the onset of immobilization

The Journal of Physiology(2021)10.1113/jp281071

N/A

0DataRank · unranked

23 citations

Gary M. Wilson, Rocky Blanco, Nathaniel D. Steinert, Wenyuan G. Zhu, Joshua J. Coon +2 more

The molecular and metabolic program by which white adipocytes adapt to cool physiologic temperatures

PLoS Biology(2021)10.1371/journal.pbio.3000988

N/A

0DataRank · unranked

22 citations

Colleen E. Dugan, Akira Nishii, Ameena Benchamana, Ziru Li, Thomas S. Cadenhead +14 more

Practical Effects of Intramolecular Hydrogen Rearrangement in Electron Transfer Dissociation-Based Proteomics

Journal of the American Society for Mass Spectrometry(2021)10.1021/jasms.1c00284

N/A

0DataRank · unranked

13 citations

Nicholas M. Riley, Michael S. Westphall, Joshua J. Coon, Trenton M. Peters-Clarke

Loss of C2orf69 defines a fatal autoinflammatory syndrome in humans and zebrafish that evokes a glycogen-storage-associated mitochondriopathy

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.05.003

N/A

0DataRank · unranked

23 citations

Sze Hwee Seet, Michael Maier, Ayşe Gürel, Ricardo Moreno Traspas, Cheryl Lee +67 more

Defining intermediates and redundancies in coenzyme Q precursor biosynthesis

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100643

N/A

0DataRank · unranked

19 citations

Adam Jochem, Sheila Johnson, Thiruchelvi R. Reddy, Jason D. Russell, Joshua J. Coon +2 more

Rapid preparation of human blood plasma for bottom-up proteomics analysis

STAR Protocols(2021)10.1016/j.xpro.2021.100856

N/A

0DataRank · unranked

6 citations

Joshua J. Coon, Evgenia Shishkova

Metabolomic Biomarkers Differentiate Soy Sauce Freshness under Conditions of Accelerated Storage

Journal of Food Quality(2021)10.1155/2021/6650990

N/A

0DataRank · unranked

5 citations

Katherine A. Overmyer, Joshua J. Coon, M.A. Drake, Taro Horiba, Scott A. Rankin +1 more

Severe COVID-19 shares a common neutrophil activation signature with other acute inflammatory states

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.30.454529

N/A

0DataRank · unranked

6 citations

Alexandre H. C. Marques, G. Baiocchi, Caroline Aliane de Souza Prado, Dennyson Leandro M. Fonseca, Paula Paccielli Freire +23 more

3D Structure Determination of Protein Complexes using Matrix-Landing Mass Spectrometry

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.13.464253

N/A

0DataRank · unranked

3 citations

Kenneth W. Lee, Austin Z. Salome, Jean M. Lodge, Timothy Grant, Joshua J. Coon +1 more

Structure and functionality of a multimeric human COQ7:COQ9 complex

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.15.468694

N/A

0DataRank · unranked

3 citations

Halil Aydin, Luciano A. Abriata, Katherine A. Overmyer, Rachel M. Guerra, Joshua J. Coon +4 more

Large-scale proteome and metabolome analysis of CSF implicates altered glucose metabolism and succinylcarnitine in Alzheimer’s disease

medRxiv(2021)10.1101/2021.09.02.21262642

N/A

0DataRank · unranked

2 citations

Justin McKetney, Yuetiva Deming, Autumn Morrow, Gilda E. Ennis, Erin M. Jonaitis +17 more

High-fat diet disrupts REG3γ and gut microbial rhythms promoting metabolic dysfunction

Cell Host & Microbe(2022)10.1016/j.chom.2022.03.030

N/A

0DataRank · unranked

122 citations

Amal Kambal, Elizabeth Zale, Joseph F. Pierre, Nathaniel Hubert, Sawako Miyoshi +14 more

Spatial snapshots of amyloid precursor protein intramembrane processing via early endosome proteomics

Nature Communications(2022)10.1038/s41467-022-33881-x

N/A

0DataRank · unranked

58 citations

Frances V Hundley, Qing Yu, Katherine A. Overmyer, Dain R. Brademan, Lia R. Serrano +7 more

Three-dimensional structure determination of protein complexes using matrix-landing mass spectrometry

Nature Communications(2022)10.1038/s41467-022-29964-4

N/A

0DataRank · unranked

54 citations

Kenneth W. Lee, Austin Z. Salome, Jean M. Lodge, Timothy Grant, Joshua J. Coon +1 more

Rapid and Gentle Immunopurification of Brain Synaptic Vesicles

Journal of Neuroscience(2022)10.1523/jneurosci.2521-21.2022

N/A

0DataRank · unranked

53 citations

Shweta Mishra, Zhao Zhang, Lanxi Wu, Justin M. McKetney, Martha M. Vestling +3 more

Severe COVID-19 Shares a Common Neutrophil Activation Signature with Other Acute Inflammatory States

Cells(2022)10.3390/cells11050847

N/A

0DataRank · unranked

51 citations

Alexandre H. C. Marques, G. Baiocchi, Caroline Aliane de Souza Prado, Dennyson Leandro M. Fonseca, Paula Paccielli Freire +23 more

Structure and functionality of a multimeric human COQ7:COQ9 complex

Molecular Cell(2022)10.1016/j.molcel.2022.10.003

N/A

0DataRank · unranked

45 citations

Halil Aydin, Luciano A. Abriata, Katherine A. Overmyer, Rachel M. Guerra, Joshua J. Coon +4 more

Matrix-Landing Mass Spectrometry for Electron Microscopy Imaging of Native Protein Complexes

Analytical Chemistry(2022)10.1021/acs.analchem.2c04263

N/A

0DataRank · unranked

16 citations

Kenneth W. Lee, Timothy Grant, Michael S. Westphall, Joshua J. Coon, Austin Z. Salome

Comparative functional genomics identifies an iron-limited bottleneck in a Saccharomyces cerevisiae strain with a cytosolic-localized isobutanol pathway

Synthetic and Systems Biotechnology(2022)10.1016/j.synbio.2022.02.007

N/A

0DataRank · unranked

12 citations

Ellen R. Wagner, Tyler B. Jacobson, Mary Tremaine, Laura K. Muehlbauer, Mick McGee +18 more

Rapid Targeted Quantitation of Protein Overexpression with Direct Infusion Shotgun Proteome Analysis (DISPA-PRM)

Analytical Chemistry(2022)10.1021/acs.analchem.1c03243

N/A

0DataRank · unranked

17 citations

Alexander S. Hebert, Julio C. Rivera Vazquez, Dain R. Brademan, Mehmet Tatli, Daniel Amador‐Noguez +3 more

Discovery Proteomics Analysis Determines That Driver Oncogenes Suppress Antiviral Defense Pathways Through Reduction in Interferon-β Autocrine Stimulation

Molecular & Cellular Proteomics(2022)10.1016/j.mcpro.2022.100247

N/A

0DataRank · unranked

9 citations

Lisa L. Kirkemo, Gary M. Wilson, Kevin Leung, M. Almond, Leanne C. Sayles +5 more

Tcof1 haploinsufficiency promotes early T cell precursor-like leukemia in NrasQ61R/+ mice

Leukemia(2022)10.1038/s41375-022-01510-7

N/A

0DataRank · unranked

4 citations

Remington Finn, Xin Gao, Lin Li, Alexander S. Hebert, Erik A. Ranheim +10 more

High fat diet disrupts diurnal interactions between small intestinal host innate immune factor REG3γ and gut microbiota resulting in metabolic dysfunction

The FASEB Journal(2022)10.1096/fasebj.2022.36.s1.r4553

N/A

0DataRank · unranked

1 citations

Amal Kambal, Elizabeth Zale, Joseph F. Pierre, Nathaniel Hubert, Sawako Miyoshi +14 more

Highly fucosylated N -glycans at the synaptic vesicle and neuronal plasma membrane

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.06.499060

N/A

0DataRank · unranked

4 citations

Trenton M. Peters-Clarke, Evgenia Shishkova, Edwin R. Chapman, Joshua J. Coon, Mazdak M. Bradberry

Early Endosome Capture Proteomics and its Application to Amyloid Precursor Protein Intramembrane Processing by β and γ-Secretases

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.31.486371

N/A

0DataRank · unranked

0 citations

Qing Yu, Frances V Hundley, Katherine A. Overmyer, Lia R. Serrano, Joao A. Paulo +6 more

Global detection of human variants and isoforms by deep proteome sequencing

Nature Biotechnology(2023)10.1038/s41587-023-01714-x

N/A

0DataRank · unranked

203 citations

Alicia Richards, Robert J. Weatheritt, Dain R. Brademan, Harald Marx, Evgenia Shishkova +7 more

Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut

Nature Microbiology(2023)10.1038/s41564-023-01326-w

N/A

0DataRank · unranked

48 citations

Vanessa Linke, Katherine A. Overmyer, Lindsay L. Traeger, Kota Kasahara, Ian Miller +25 more

Large‐scale proteome and metabolome analysis of CSF implicates altered glucose and carbon metabolism and succinylcarnitine in Alzheimer's disease

Alzheimer s & Dementia(2023)10.1002/alz.13130

N/A

0DataRank · unranked

45 citations

Justin McKetney, Yuetiva Deming, Autumn Morrow, Gilda E. Ennis, Erin M. Jonaitis +17 more

Rapid Multi-Omics Sample Preparation for Mass Spectrometry

Analytical Chemistry(2023)10.1021/acs.analchem.2c02042

N/A

0DataRank · unranked

41 citations

Annie Jen, Yunyun Zhu, Yuchen He, Evgenia Shishkova, Katherine A. Overmyer +2 more

N-glycoproteomics of brain synapses and synaptic vesicles

Cell Reports(2023)10.1016/j.celrep.2023.112368

N/A

0DataRank · unranked

38 citations

Trenton M. Peters-Clarke, Evgenia Shishkova, Edwin R. Chapman, Joshua J. Coon, Mazdak M. Bradberry

PPTC7 maintains mitochondrial protein content by suppressing receptor-mediated mitophagy

Nature Communications(2023)10.1038/s41467-023-42069-w

N/A

0DataRank · unranked

33 citations

Lia R. Serrano, Laura K. Muehlbauer, Catherine E. Balnis, Lianjie Wei, Andrew J. H. Smith +13 more

The citrate transporters SLC13A5 and SLC25A1 elicit different metabolic responses and phenotypes in the mouse

Communications Biology(2023)10.1038/s42003-023-05311-1

N/A

0DataRank · unranked

20 citations

Katherine A. Overmyer, Alexis J. Lawton, Ildikó Kasza, Samantha L. Shapiro, Patricia Gallego‐Muñoz +5 more

Onto Grid Purification and 3D Reconstruction of Protein Complexes Using Matrix-Landing Native Mass Spectrometry

Journal of Proteome Research(2023)10.1021/acs.jproteome.2c00595

N/A

0DataRank · unranked

20 citations

Austin Z. Salome, Michael S. Westphall, Timothy Grant, Joshua J. Coon, Kenneth W. Lee

Systematic Analysis of Metabolic Bottlenecks in the Methylerythritol 4-Phosphate (MEP) Pathway of Zymomonas mobilis

mSystems(2023)10.1128/msystems.00092-23

N/A

0DataRank · unranked

20 citations

Mehmet Tatli, Julio Rivera Vazquez, Sarathi M. Weraduwage, Noah Stern, Alexander S. Hebert +6 more

DNA-Compatible Copper/TEMPO Oxidation for DNA-Encoded Libraries

Bioconjugate Chemistry(2023)10.1021/acs.bioconjchem.3c00254

N/A

0DataRank · unranked

19 citations

Edward B. Pimentel, Trenton M. Peters-Clarke, Daniel J. Nesbitt, Joshua J. Coon, Jeffrey D. Martell +1 more

Hem25p is required for mitochondrial IPP transport in fungi

Nature Cell Biology(2023)10.1038/s41556-023-01250-5

N/A

0DataRank · unranked

15 citations

Rachel M. Guerra, Sean Rogers, Zixiang Fang, Laura K. Muehlbauer, Evgenia Shishkova +4 more

Regulation of DNA damage and transcriptional output in the vasculature through a cytoglobin-HMGB2 axis

Redox Biology(2023)10.1016/j.redox.2023.102838

N/A

0DataRank · unranked

13 citations

Frances Jourd’heuil, Le Gia Cat Pham, Kurrim Gilliard, Dennis Howard, Joseph Balnis +13 more

A transcriptional network governing ceramide homeostasis establishes a cytokine-dependent developmental process

Nature Communications(2023)10.1038/s41467-023-42978-w

N/A

0DataRank · unranked

10 citations

Abiola Babatunde, Stephanie Qiu, Hamsini Harikumar, Joshua J. Coon, Katherine A. Overmyer +4 more

Mass Spectrometry-Based Multi-omics Integration with a Single Set of C. elegans Samples

Analytical Chemistry(2023)10.1021/acs.analchem.3c00734

N/A

0DataRank · unranked

10 citations

Annie Jen, Katherine A. Overmyer, Arwen W. Gao, Evgenia Shishkova, Johan Auwerx +2 more

HIV-1 virological synapse formation enhances infection spread by dysregulating Aurora Kinase B

PLoS Pathogens(2023)10.1371/journal.ppat.1011492

N/A

0DataRank · unranked

10 citations

Eunju Park, Chris S. Magnano, Mark Horswill, Alicia Richards, Gregory K. Potts +7 more

Plasma metabolomics supports non-fasted sampling for metabolic profiling across a spectrum of glucose tolerance in the Nile rat model for type 2 diabetes

Lab Animal(2023)10.1038/s41684-023-01268-0

N/A

0DataRank · unranked

8 citations

Annie M. Curtis, Annie Jen, James A. Thomson, Dennis Clegg, Peng Jiang +4 more

Mass spectrometers as cryoEM grid preparation instruments

Current Opinion in Structural Biology(2023)10.1016/j.sbi.2023.102699

N/A

0DataRank · unranked

7 citations

Kenneth W. Lee, Austin Z. Salome, Joshua J. Coon, Timothy Grant, Michael S. Westphall

Decreased plasma cartilage acidic protein 1 in COVID‐19

Physiological Reports(2023)10.14814/phy2.15814

N/A

0DataRank · unranked

2 citations

Joseph Balnis, Laura K. Muehlbauer, Yury V. Bukhman, Matthew S. Stefely, Katherine A. Overmyer +10 more

Fast and Deep Phosphoproteome Analysis with the Orbitrap Astral Mass Spectrometer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.21.568149

N/A

0DataRank · unranked

12 citations

Pavel Sinitcyn, Patrick Forny, Trenton M. Peters-Clarke, Caroline Fecher, Andrew J. H. Smith +19 more

Instrumentation at the leading edge of proteomics

ChemRxiv(2023)10.26434/chemrxiv-2023-8l72m

N/A

0DataRank · unranked

10 citations

Joshua J. Coon, Nicholas M. Riley, Trenton M. Peters-Clarke

Hem25p is a mitochondrial IPP transporter

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.14.532620

N/A

0DataRank · unranked

4 citations

Rachel M. Guerra, Sean Rogers, Zixiang Fang, Laura K. Muehlbauer, Evgenia Shishkova +4 more

Pptc7 maintains mitochondrial protein content by suppressing receptor-mediated mitophagy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.28.530351

N/A

0DataRank · unranked

3 citations

Lia R. Serrano, Laura K. Muehlbauer, Catie Balnis, Keri‐Lyn Kozul, Edrees H. Rashan +8 more

An alphacoronavirus polymerase structure reveals conserved co-factor functions

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.15.532841

N/A

0DataRank · unranked

1 citations

Peter J Hoferle, Kenneth W. Lee, Joshua J. Coon, Robert N. Kirchdoerfer, Thomas K. Anderson

A role for cytoglobin in regulating intracellular hydrogen peroxide and redox signals in the vasculature

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.31.535146

N/A

0DataRank · unranked

1 citations

Frances Jourd’heuil, Le Gia Cat Pham, Kurrim Gilliard, Joseph Balnis, Annie Jen +6 more

Plasma metabolomics supports non-fasted sampling for early detection of impaired glucose tolerance in the Nile rat model of type 2 diabetes

Research Square(2023)10.21203/rs.3.rs-2492538/v1

N/A

0DataRank · unranked

0 citations

Benton J. Anderson, Anne B. Curtis, Annie Jen, James Thomson, Dennis Clegg +4 more

Nuclear cytoglobin associates with HMGB2 and regulates DNA damage and genome-wide transcriptional output in the vasculature

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.10.540045

N/A

0DataRank · unranked

0 citations

Frances Jourd’heuil, Le Gia Cat Pham, Kurrim Gilliard, Dennis Howard, Joseph Balnis +13 more

SCD1 and monounsaturated lipids are required for autophagy and survival of adipocytes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.27.564376

N/A

0DataRank · unranked

0 citations

Sydney K. Peterson, Rachel Simmermon, Katherine A. Overmyer, Akira Nishii, Emma Paulsson +13 more

Heme biosynthesis regulates BCAA catabolism and thermogenesis in brown adipose tissue

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.28.568893

N/A

0DataRank · unranked

0 citations

Julia K. Hansen, Steven V John, Annie Jen, Noah D. Carrillo, Hoang Bui +12 more

Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer

Nature Communications(2024)10.1038/s41467-024-51274-0

N/A

0DataRank · unranked

77 citations

Pavel Sinitcyn, Patrick Forny, Trenton M. Peters-Clarke, Caroline Fecher, Andrew J. H. Smith +19 more

Instrumentation at the Leading Edge of Proteomics

Analytical Chemistry(2024)10.1021/acs.analchem.3c04497

N/A

0DataRank · unranked

76 citations

Joshua J. Coon, Nicholas M. Riley, Trenton M. Peters-Clarke

The One Hour Human Proteome

Molecular & Cellular Proteomics(2024)10.1016/j.mcpro.2024.100760

N/A

0DataRank · unranked

54 citations

Trenton M. Peters-Clarke, Tabiwang N. Arrey, Eugen Damoc, Margaret Lea Robinson, Noah M. Lancaster +15 more

RNA sequestration in P-bodies sustains myeloid leukaemia

Nature Cell Biology(2024)10.1038/s41556-024-01489-6

N/A

0DataRank · unranked

33 citations

Ludovica Proietti, Gemma Valcárcel, Anna V. López-Rubio, Patrizia Pessina, Thomas Eder +27 more

Regulated N-glycosylation controls chaperone function and receptor trafficking

Science(2024)10.1126/science.adp7201

N/A

0DataRank · unranked

24 citations

Ramin Dubey, Annie Jen, Ganesh V. Pusapati, Bharti Singal, Evgenia Shishkova +7 more

Lipid membrane remodeling and metabolic response during isobutanol and ethanol exposure in Zymomonas mobilis

Biotechnology for Biofuels and Bioproducts(2024)10.1186/s13068-023-02450-9

N/A

0DataRank · unranked

12 citations

Edna A. Trujillo, Jonathan Williams, Fukang She, Fitsum Getahun, Melanie M. Callaghan +3 more

Scd1 and monounsaturated lipids are required for autophagy and survival of adipocytes

Molecular Metabolism(2024)10.1016/j.molmet.2024.101916

N/A

0DataRank · unranked

15 citations

Sydney K. Peterson, Rachel C. Simmermon, Katherine A. Overmyer, Akira Nishii, Emma Paulsson +13 more

Phosphorothioate RNA Analysis by NETD Tandem Mass Spectrometry

Molecular & Cellular Proteomics(2024)10.1016/j.mcpro.2024.100742

N/A

0DataRank · unranked

14 citations

Qiuwen Quan, Benton J. Anderson, William M. McGee, Emily Lohr, Alexander S. Hebert +3 more

Chemical Proteomics Strategies for Analyzing Protein Lipidation Reveal the Bacterial O-Mycoloylome

Journal of the American Chemical Society(2024)10.1021/jacs.4c02278

N/A

0DataRank · unranked

10 citations

Trenton M. Peters-Clarke, Kyle J. Biegas, Evgenia Shishkova, Elizabeth M. Hart, Amelia C. McKitterick +6 more

LipiDex 2 Integrates MSn Tree-Based Fragmentation Methods and Quality Control Modules to Improve Discovery Lipidomics

Analytical Chemistry(2024)10.1021/acs.analchem.4c00359

N/A

0DataRank · unranked

10 citations

Dain R. Brademan, Yuchen He, Katherine A. Overmyer, Joshua J. Coon, Benton J. Anderson

Succinate dehydrogenase–complex II regulates skeletal muscle cellular respiration and contractility but not muscle mass in genetically induced pulmonary emphysema

Science Advances(2024)10.1126/sciadv.ado8549

N/A

0DataRank · unranked

10 citations

Ankita Tufts, Emily Jackson, Lisa A. Drake, Diane V. Singer, David Lacomis +11 more

Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Infrared-Tandem Mass Tags

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00076

N/A

0DataRank · unranked

9 citations

Yiran Liang, Keaton L. Mertz, Kenneth W. Lee, Michael S. Westphall, Joshua D. Hinkle +5 more

High-content phenotypic analysis of a C. elegans recombinant inbred population identifies genetic and molecular regulators of lifespan

Cell Reports(2024)10.1016/j.celrep.2024.114836

N/A

0DataRank · unranked

6 citations

Gaby El Alam, Yunyun Zhu, Weisha Li, Jonathan Sulc, Xiaoxu Li +12 more

The prolyl isomerase FKBP11 is a secretory translocon accessory factor

Molecular Biology of the Cell(2024)10.1091/mbc.e24-07-0305

N/A

0DataRank · unranked

2 citations

Ben Cheng, Frank Zhong, Roshan Jha, Yu Wan, Andrei Anghel +6 more

Cell type–specific gene therapy confers protection against motor neuron disease caused by a TFG variant

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2410996121

N/A

0DataRank · unranked

2 citations

Caitlin A. Mendina, Emma Burkard, James R. Alvin, Yunyun Zhu, Joshua J. Coon +2 more

Identification of a Resistance Exercise-Specific Signaling Pathway that Drives Skeletal Muscle Growth

Research Square(2024)10.21203/rs.3.rs-4997138/v1

N/A

0DataRank · unranked

4 citations

Aaron C. Q. Thomas, Gary M. Wilson, Jamie E. Hibbert, Corey Flynn, Chris McGlory +8 more

Instrumentation at the leading edge of proteomics

ChemRxiv(2024)10.26434/chemrxiv-2023-8l72m-v2

N/A

0DataRank · unranked

2 citations

Joshua J. Coon, Nicholas M. Riley, Trenton M. Peters-Clarke

High-content phenotypic analysis of a C. elegans recombinant inbred population identifies genetic and molecular regulators of lifespan

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.15.575638

N/A

0DataRank · unranked

1 citations

Gaby El Alam, Yunyun Zhu, Weisha Li, Elena Katsyuba, Jonathan Sulc +12 more

SPE-CZE-MS quantifies zeptomole concentrations of phosphorylated peptides

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.07.627347

N/A

0DataRank · unranked

1 citations

J. Scott Mellors, J. Will Thompson, Noah M. Lancaster, Margaret Lea Robinson, Katherine A. Overmyer +3 more

Global cellular proteo-lipidomic profiling of diverse lysosomal storage disease mutants using nMOST

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.26.586828

N/A

0DataRank · unranked

0 citations

Yuchen He, Sharan Swarup, Katherine A. Overmyer, Yizhi Jiang, Johann Brenner +15 more

Technical Evaluation of Plasma Proteomics Technologies

Journal of Proteome Research(2025)10.1021/acs.jproteome.5c00221

N/A

0DataRank · unranked

48 citations

Katherine A. Overmyer, Pavel Sinitcyn, Noah M. Lancaster, Scott T. Quarmby, Joshua J. Coon +1 more

Triacylglycerol mobilization underpins mitochondrial stress recovery

Nature Cell Biology(2025)10.1038/s41556-024-01586-6

N/A

0DataRank · unranked

19 citations

Yunyun Zhu, Rachel M. Guerra, Andrew J. Smith, Aline Arra, Lia R. Serrano +6 more

Hepatic lipid remodeling in cold exposure uncovers direct regulation of bis(monoacylglycero)phosphate lipids by phospholipase A2 group XV

Cell Metabolism(2025)10.1016/j.cmet.2025.04.015

N/A

0DataRank · unranked

15 citations

Raghav Jain, Thomas Kizzar, Gisela Geoghegan, Daniel J. Nesbitt, Amy T. Cavanagh +19 more

Machine learning reveals genes impacting oxidative stress resistance across yeasts

Nature Communications(2025)10.1038/s41467-025-60189-3

N/A

0DataRank · unranked

7 citations

Linda C. Horianopoulos, Logan Elkin, Kenia Segura Abá, Drew Jordahl, Katherine A. Overmyer +6 more

Cytoglobin scavenges intracellular hydrogen peroxide and regulates redox signals in the vasculature

Redox Biology(2025)10.1016/j.redox.2025.103633

N/A

0DataRank · unranked

6 citations

Clinton Mathai, Le Gia Cat Pham, Kurrim Gilliard, Joseph Balnis, Katherine A. Overmyer +5 more

SPE-CZE-MS Quantifies Zeptomole Amounts of Phosphorylated Peptides

Journal of Proteome Research(2025)10.1021/acs.jproteome.5c00194

N/A

0DataRank · unranked

6 citations

J. Scott Mellors, J. Will Thompson, Noah M. Lancaster, Margaret Lea Robinson, Katherine A. Overmyer +3 more

Orthogonal chemical genomics approaches reveal genomic targets for increasing anaerobic chemical tolerance in Zymomonas mobilis

mSystems(2025)10.1128/msystems.01001-25

N/A

0DataRank · unranked

2 citations

Amy L. Enright, Morgan Davies, Elizabeth M. Whelan, Kevin S. Myers, Margaret L. Robinson +7 more

pH adjustment increases biofuel production from inhibitory switchgrass hydrolysates

Bioresource Technology(2025)10.1016/j.biortech.2025.132651

N/A

0DataRank · unranked

6 citations

Johnathan G. Crandall, Dan Xie, José Serate, Evan Handowski, Annie Jen +7 more

Thermodynamics shapes the in vivo enzyme burden of glycolytic pathways

mBio(2025)10.1128/mbio.01837-25

N/A

0DataRank · unranked

2 citations

Annie Jen, Evgenia Shishkova, Kirsten Fisher, Eashant Thusoo, Jonathan Williams +5 more

MmuPV1 E7 promotes phenotypes associated with “high-risk” HPV infection in mouse keratinocytes

Journal of Virology(2025)10.1128/jvi.01097-25

N/A

0DataRank · unranked

1 citations

Liyan Zhang, Laura K. Muelhbauer, Mitchell Hayes, Joshua J. Coon, Megha Padi +2 more

Deep Learning Predicts Non-Normal Transmission Distributions in High-Field Asymmetric Waveform Ion Mobility (FAIMS) Directly from Peptide Sequence

Analytical Chemistry(2025)10.1021/acs.analchem.4c05359

N/A

0DataRank · unranked

2 citations

Ian Miller, A. Hutton, Pavel Sinitcyn, Lia R. Serrano, Joshua J. Coon +2 more

Thermodynamics shape the in vivo enzyme burden of glycolytic pathways

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.31.635972

N/A

0DataRank · unranked

2 citations

Annie Jen, Evgenia Shishkova, Eashant Thusoo, Jonathan Williams, Alex Henkel +4 more

Adeno-Associated Virus 2 (AAV2) - induced RPA exhaustion generates cellular DNA damage and restricts viral gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.22.649920

N/A

0DataRank · unranked

1 citations

MegAnn K. Haubold, Marcel Morgenstern, Phoenix M. Shepherd, Clairine I. S. Larsen, Ava E. Bartz +6 more

Orthogonal chemical genomics approaches reveal genomic targets for increasing anaerobic chemical tolerance in Zymomonas mobilis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.09.663894

N/A

0DataRank · unranked

1 citations

Amy L. Enright, Morgan Davies, Elizabeth M. Whelan, Kevin S. Myers, Margaret L. Robinson +7 more

DNA-Scaffolded Ultrahigh-Throughput Reaction Screening

ChemRxiv(2025)10.26434/chemrxiv-2025-lm981

N/A

0DataRank · unranked

1 citations

Edward B. Pimentel, Beck Miller, Daniel J. Nesbitt, Justice L. Merrifield, Ethan M. Hartman +6 more

IFIT3 RNA-binding activity promotes influenza A virus infection and translation efficiency

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.17.638785

N/A

0DataRank · unranked

0 citations

Daniel J. Nesbitt, Grace A. Schaack, Elizabeth M Feltman, Thomas Nipper, Supasek Kongsomros +7 more

Genetic mapping of lifespan and mitochondrial stress response in C. elegans

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.26.661693

N/A

0DataRank · unranked

0 citations

Weisha Li, Arwen W. Gao, Yunyun Zhu, Elena Katsyuba, Katherine A. Overmyer +11 more

Genetic mapping of lifespan and mitochondrial stress response in C. elegans

Research Square(2025)10.21203/rs.3.rs-7093535/v1

N/A

0DataRank · unranked

0 citations

Xiaoxu Li, Weisha Li, Arwen W. Gao, Yunyun Zhu, Elena Katsyuba +11 more

Aging-linked systemic lipid signature is reprogrammed by caloric restriction in rhesus monkeys

Molecular Systems Biology(2025)10.1038/s44320-025-00177-3

N/A

0DataRank · unranked

0 citations

Josef P. Clark, Di Kuang, Timothy W. Rhoads, Ricki J. Colman, Joshua J. Coon +3 more

Implementation of Infrared-Activated Negative Electron Transfer Dissociation (IR-NETD) Using Xenon on a Quadrupole-Orbitrap-Quadrupole Linear Ion Trap Mass Spectrometer

Journal of the American Society for Mass Spectrometry(2025)10.1021/jasms.5c00345

N/A

0DataRank · unranked

0 citations

Keaton L. Mertz, Mitchell D. Probasco, Trenton M. Peters-Clarke, Trent J. Oman, John E. P. Syka +3 more

Regarding Emitter Positioning for Nanoflow Electrospray Ionization

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.18.695161

N/A

0DataRank · unranked

0 citations

Scott T. Quarmby, Katherine A. Overmyer, Joshua J. Coon, Noah M. Lancaster

Mapping Physiological ADP-Ribosylation Using Activated Ion Electron Transfer Dissociation

Cell Reports(2020)10.1016/j.celrep.2020.108176

N/A

0DataRank · unranked

124 citations

Ivo A. Hendriks, Jean M. Lodge, Martin Rykær, Benjamin Furtwängler, Evgenia Shishkova +4 more

Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogenes

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1917947117

N/A

0DataRank · unranked

85 citations

Gary M. Wilson, Lisa L. Kirkemo, Nicholas M. Riley, Joshua J. Coon, James A. Wells +1 more

A large-scale genome–lipid association map guides lipid identification

Nature Metabolism(2020)10.1038/s42255-020-00278-3

N/A

0DataRank · unranked

60 citations

Katherine A. Overmyer, Ian Miller, Dain R. Brademan, Paul D. Hutchins, Edna A. Trujillo +15 more

Phosphoproteome Response to Dithiothreitol Reveals Unique Versus Shared Features of Saccharomyces cerevisiae Stress Responses

Journal of Proteome Research(2020)10.1021/acs.jproteome.0c00253

N/A

0DataRank · unranked

54 citations

Evgenia Shishkova, Michael Place, Ellen R. Wagner, Joshua J. Coon, Audrey P. Gasch +1 more

Discovering How Heme Controls Genome Function Through Heme-omics

Cell Reports(2020)10.1016/j.celrep.2020.107832

N/A

0DataRank · unranked

47 citations

Ye Zheng, Xin Liu, Yuannyu Zhang, Gretchen Seim, Nobuyuki Tanimura +8 more

Quantitative capillary zone electrophoresis-mass spectrometry reveals the N -glycome developmental plan during vertebrate embryogenesis

Molecular Omics(2020)10.1039/d0mo00005a

N/A

0DataRank · unranked

10 citations

Kyle M. Dubiak, Elizabeth H. Peuchen, Matthew M. Champion, Zhenbin Zhang, Alex S. Hebert +5 more

Constructing and deconstructing GATA2-regulated cell fate programs to establish developmental trajectories

The Journal of Experimental Medicine(2020)10.1084/jem.20191526

N/A

0DataRank · unranked

44 citations

Daniel Conn, Evgenia Shishkova, Koichi R. Katsumura, Peng Liu, Siqi Shen +10 more

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