Justas Dauparas

Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 27 papers. Top paper: “De novo design of luciferases using deep learning”.

De novo design of luciferases using deep learning

Nature(2023)10.1038/s41586-023-05696-3

N/A

7.4DataRank · unranked

460 citations

Christoffer Norn, Yakov Kipnis, Doug Tischer, Samuel J. Pellock, Declan Evans +13 more

Rapid and automated design of two-component protein nanomaterials using ProteinMPNN

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2314646121

N/A

1.1DataRank · unranked

44 citations

Natalie Brunette, Alex Goodson, Justas Dauparas, Sue Y. Yi, Erin C. Yang +9 more

Scaffolding protein functional sites using deep learning

Science(2022)10.1126/science.abn2100

N/A

0.926DataRank · unranked

478 citations

Sidney Lisanza, David Juergens, Doug Tischer, Joseph L. Watson, Karla M. Castro +19 more

Peptide-binding specificity prediction using fine-tuned protein structure prediction networks

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2216697120

N/A

0.722DataRank · unranked

122 citations

Justas Dauparas, Minkyung Baek, Mohamad H. Abedi, David Baker, Philip Bradley +1 more

Robust deep learning based protein sequence design using ProteinMPNN

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.03.494563

N/A

0.717DataRank · unranked

118 citations

Ivan Anishchenko, Nathaniel R. Bennett, Hua Bai, Robert J. Ragotte, Lukas F. Milles +17 more

Blueprinting extendable nanomaterials with standardized protein blocks

Nature(2024)10.1038/s41586-024-07188-4

N/A

0.624DataRank · unranked

63 citations

Yang Hsia, Ryan D. Kibler, Jinwei Xu, Neville P. Bethel, Deepesh Nagarajan +27 more

Single Layers of Attention Suffice to Predict Protein Contacts

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.21.423882

N/A

0.538DataRank · unranked

35 citations

Neil Thomas, Roshan Rao, Justas Dauparas, Peter K. Koo, David Baker +3 more

Computational design of soluble functional analogues of integral membrane proteins

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.09.540044

N/A

0.470DataRank · unranked

22 citations

Martin Pačesa, Nicolas Goldbach, L Dornfeld, Petra E. M. Balbi, Sandrine Georgeon +11 more

Hallucination of closed repeat proteins containing central pockets

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01112-6

N/A

0.396DataRank · unranked

13 citations

Derrick R. Hicks, Dmitri Zorine, Justas Dauparas, Basile I. M. Wicky, Lukas F. Milles +7 more

The structure-fitness landscape of pairwise relations in generative sequence models

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.29.402875

N/A

0.330DataRank · unranked

8 citations

Haobo Wang, Michael A. Stiffler, Justas Dauparas, Peter K. Koo, Sergey Ovchinnikov +1 more

Design of stimulus-responsive two-state hinge proteins

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.27.525968

N/A

0.312DataRank · unranked

7 citations

Philip J. Y. Leung, Maxx H. Tessmer, Adam Broerman, Cullen Demakis, Acacia F. Dishman +18 more

Hallucinating protein assemblies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.09.493773

N/A

0.241DataRank · unranked

4 citations

Lukas F. Milles, Alexis Courbet, Robert J. Ragotte, Justas Dauparas, Elias S. Kinfu +11 more

Improving Protein Expression, Stability, and Function with ProteinMPNN

Journal of the American Chemical Society(2024)10.1021/jacs.3c10941

N/A

0DataRank · unranked

314 citations

Reyes Núñez‐Franco, Indrek Kalvet, Samuel J. Pellock, Basile I. M. Wicky, Lukas F. Milles +11 more

Computational design of soluble and functional membrane protein analogues

Nature(2024)10.1038/s41586-024-07601-y

N/A

0DataRank · unranked

126 citations

Martin Pačesa, Nicolas Goldbach, L Dornfeld, Petra E. M. Balbi, Sandrine Georgeon +11 more

Binding and sensing diverse small molecules using shape-complementary pseudocycles

Science(2024)10.1126/science.adn3780

N/A

0DataRank · unranked

85 citations

Meerit Y. Said, Long Tran, Sagardip Majumder, Inna Goreshnik, Gyu Rie Lee +20 more

RNA sequence design and protein–DNA specificity prediction with NA-MPNN

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.03.679414

N/A

0DataRank · unranked

11 citations

Andrew Favor, Ryan McHugh, Raktim Mitra, Robert Pecoraro, Justas Dauparas +3 more

Accurate prediction of protein structures and interactions using a three-track neural network

Science(2021)10.1126/science.abj8754

N/A

0DataRank · unranked

5780 citations

Frank DiMaio, Ivan Anishchenko, Justas Dauparas, Sergey Ovchinnikov, Gyu Rie Lee +27 more

Deep learning methods for designing proteins scaffolding functional sites

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.10.468128

N/A

0DataRank · unranked

36 citations

Sidney Lisanza, David Juergens, Doug Tischer, Ivan Anishchenko, Minkyung Baek +10 more

Robust deep learning–based protein sequence design using ProteinMPNN

Science(2022)10.1126/science.add2187

N/A

0DataRank · unranked

1912 citations

Ivan Anishchenko, Nathaniel R. Bennett, Hua Bai, Robert J. Ragotte, Lukas F. Milles +17 more

End-to-end learning of multiple sequence alignments with differentiable Smith–Waterman

Bioinformatics(2022)10.1093/bioinformatics/btac724

N/A

0DataRank · unranked

44 citations

Nicholas Bhattacharya, Roshan Rao, Justas Dauparas, Neil Thomas, Juannan Zhou +4 more

Language models generalize beyond natural proteins

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.21.521521

N/A

0DataRank · unranked

202 citations

Ori Kabeli, Yilun Du, Basile I. M. Wicky, Lukas F. Milles, Justas Dauparas +5 more

Hallucination of closed repeat proteins containing central pockets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.01.506251

N/A

0DataRank · unranked

3 citations

Derrick R. Hicks, Dmitri Zorine, Justas Dauparas, Basile I. M. Wicky, Lukas F. Milles +7 more

Design of stimulus-responsive two-state hinge proteins

Science(2023)10.1126/science.adg7731

N/A

0DataRank · unranked

91 citations

Philip J. Y. Leung, Maxx H. Tessmer, Adam Broerman, Cullen Demakis, Acacia F. Dishman +18 more

Small-molecule binding and sensing with a designed protein family

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.01.565201

N/A

0DataRank · unranked

34 citations

Samuel J. Pellock, Christoffer Norn, Doug Tischer, Justas Dauparas, Ivan Anischenko +14 more

De novo design of diverse small molecule binders and sensors using Shape Complementary Pseudocycles

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.20.572602

N/A

0DataRank · unranked

14 citations

Meerit Y. Said, Long Tran, Sagardip Majumder, Inna Goreshnik, Gyu Rie Lee +20 more

Rapid and automated design of two-component protein nanomaterials using ProteinMPNN

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.04.551935

N/A

0DataRank · unranked

10 citations

Natalie Brunette, Alexander M.C. Goodson, Justas Dauparas, Sue Yi, Erin C. Yang +9 more

Blueprinting expandable nanomaterials with standardized protein building blocks

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.09.544258

N/A

0DataRank · unranked

6 citations

Yang Hsia, Ryan D. Kibler, Jinwei Xu, Neville P. Bethel, Deepesh Nagarajan +26 more