Kimberley D. Seed

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 28 papers. Top paper: “Colistin-resistant Escherichia coli carrying mcr-1 in food, water, hand rinse, and healthy human gut in Bangladesh”.

Colistin-resistant Escherichia coli carrying mcr-1 in food, water, hand rinse, and healthy human gut in Bangladesh

Gut Pathogens(2020)10.1186/s13099-020-0345-2

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55 citations

Jarin Tasnim, Indrajeet Barman, Sahitya Ranjan Biswas, Fatema Tuz Jubyda, Marzia Sultana +6 more

A chimeric nuclease substitutes a phage CRISPR-Cas system to provide sequence-specific immunity against subviral parasites

eLife(2021)10.7554/elife.68339

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57 citations

Maria Nguyen, Kimberley D. Seed, Zachary K. Barth

A phage satellite tunes inducing phage gene expression using a domesticated endonuclease to balance inhibition and virion hijacking

Nucleic Acids Research(2021)10.1093/nar/gkab207

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44 citations

Caroline M Boyd, Tania V. Silvas, Kimberley D. Seed, Zoe Netter

A Tail Fiber Protein and a Receptor-Binding Protein Mediate ICP2 Bacteriophage Interactions with Vibrio cholerae OmpU

Journal of Bacteriology(2021)10.1128/jb.00141-21

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23 citations

Minmin Yen, Kimberley D. Seed, David W. Lazinski, Andrew Camilli, Andrea Lim

Evolutionary sweeps of subviral parasites and their phage host bring unique parasite variants and disappearance of a phage CRISPR-Cas system

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.07.463549

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8 citations

Stephanie G. Hays, Maria Nguyen, Fatema‐Tuz Johura, Marzia Sultana, Munirul Alam +2 more

A Tail Fiber Protein and a Receptor-Binding Protein Mediate ICP2 Bacteriophage Interactions with Vibrio cholerae OmpU

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.08.434494

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0 citations

Minmin Yen, Kimberley D. Seed, David W. Lazinski, Andrew Camilli, Andrea Lim

Evolutionary Sweeps of Subviral Parasites and Their Phage Host Bring Unique Parasite Variants and Disappearance of a Phage CRISPR-Cas System

mBio(2022)10.1128/mbio.03088-21

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42 citations

Stephanie G. Hays, Maria Nguyen, Fatema‐Tuz Johura, Marzia Sultana, Munirul Alam +2 more

The RNA-RNA interactome between a phage and its satellite virus reveals a small RNA differentially regulates gene expression across both genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.08.487710

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0 citations

Angus Angermeyer, Kimberley D. Seed, Drew T. Dunham

Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh

Nature Communications(2023)10.1038/s41467-023-36687-7

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54 citations

Mohammad Tarequl Islam, Razib Mazumder, Dinesh Mondal, Kazi Sumaita Nahar, Marzia Sultana +12 more

A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids

eLife(2023)10.7554/elife.87611

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28 citations

Sundharraman Subramanian, Drew T. Dunham, Kristin N. Parent, Kimberley D. Seed, Caroline M. Boyd

Nuclease genes occupy boundaries of genetic exchange between bacteriophages

NAR Genomics and Bioinformatics(2023)10.1093/nargab/lqad076

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21 citations

Drew T. Dunham, Kimberley D. Seed, Zachary K. Barth

The RNA–RNA interactome between a phage and its satellite virus reveals a small RNA that differentially regulates gene expression across both genomes

Molecular Microbiology(2023)10.1111/mmi.15046

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11 citations

Angus Angermeyer, Kimberley D. Seed, Drew T. Dunham

Adaptation to bile and anaerobicity limits Vibrio cholerae phage adsorption

mBio(2023)10.1128/mbio.01985-23

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7 citations

Drew T. Dunham, Kimberley D. Seed, Zoe Netter

Nuclease genes occupy boundaries of genetic exchange between bacteriophages

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.23.533998

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7 citations

Drew T. Dunham, Kimberley D. Seed, Zachary K. Barth

A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.01.530633

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5 citations

Sundharraman Subramanian, Drew T. Dunham, Kristin N. Parent, Kimberley D. Seed, Caroline M. Boyd

Adaptation to bile and anaerobicity limits Vibrio cholerae phage adsorption

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.22.537938

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2 citations

Drew T. Dunham, Kimberley D. Seed, Zoe Netter

Sporadic phage defense in epidemic Vibrio cholerae mediated by the toxin-antitoxin system DarTG is countered by a phage-encoded antitoxin mimic

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.14.571748

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2 citations

Kimberley D. Seed, Kishen M. Patel

A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids

(2023)10.7554/elife.87611.2

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1 citations

Sundharraman Subramanian, Drew T. Dunham, Kristin N. Parent, Kimberley D. Seed, Caroline M. Boyd

Reviewer #2 (Public Review): A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids

(2023)10.7554/elife.87611.2.sa1

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0 citations

Sundharraman Subramanian, Drew T. Dunham, Kristin N. Parent, Kimberley D. Seed, Caroline M. Boyd

The vibriophage-encoded inhibitor OrbA abrogates BREX-mediated defense through the ATPase BrxC

Journal of Bacteriology(2024)10.1128/jb.00206-24

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12 citations

Drew T. Dunham, Kimberley D. Seed, Reid T. Oshiro

Sporadic phage defense in epidemic Vibrio cholerae mediated by the toxin-antitoxin system DarTG is countered by a phage-encoded antitoxin mimic

mBio(2024)10.1128/mbio.00111-24

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15 citations

Kimberley D. Seed, Kishen M. Patel

Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae

mSphere(2024)10.1128/msphere.00011-24

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9 citations

Drew T. Dunham, Kimberley D. Seed, Lydia Freddolino, Yulduz Rakibova

A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids

eLife(2024)10.7554/elife.87611.3

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3 citations

Sundharraman Subramanian, Drew T. Dunham, Kristin N. Parent, Kimberley D. Seed, Caroline M. Boyd

Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2023.12.30.573743

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1 citations

Drew T. Dunham, Kimberley D. Seed, Lydia Freddolino, Yulduz Rakibova

A fatal case of Vibrio cholerae-associated diarrhea and bacteremia in a 30-year-old carrier of beta-thalassemia

Gut Pathogens(2024)10.1186/s13099-024-00655-3

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0DataRank · unranked

0 citations

Kazi Sumaita Nahar, Nikhat Ara, Suma Mita Biswas, Waliullah, Jarin Tasnim +11 more

A DNA nicking Class 1 OLD family nuclease mediates phage defense in Vibrio cholerae and is countered by a phage-encoded inhibitor

Nucleic Acids Research(2025)10.1093/nar/gkaf728

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3 citations

Kimberley D. Seed, Kishen M. Patel

Capturing dynamic phage-pathogen coevolution by clinical surveillance

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.29.635557

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4 citations

Caroline M. Boyd, Jeannette E. Farnham, Md Mamun Monir, Mohammad Tarequl Islam, Marzia Sultana +4 more

A Class 1 OLD family nuclease encoded by Vibrio cholerae is countered by a vibriophage-encoded direct inhibitor

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.06.631583

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2 citations

Kimberley D. Seed, Kishen M. Patel