🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Muyu Yang

Carnegie Mellon University

ORCID: 0000-0002-0142-0328
Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
1.9Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Complete sequencing of ape genomes

Nature(2025)10.1038/s41586-025-08816-3
Top 16%
1.3DataRank
Top 16%128 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Papers

Driven by 10 papers — median percentile 75. Top paper: “Complete sequencing of ape genomes”.

Complete sequencing of ape genomes

Nature(2025)10.1038/s41586-025-08816-3
Top 16%
1.3DataRank
Top 16%128 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Computational methods for analysing multiscale 3D genome organization

Nature Reviews Genetics(2023)10.1038/s41576-023-00638-1
N/A
0.683DataRank · unranked
94 citations

Lorenzo Boninsegna, Muyu Yang, Tom Misteli, Frank Alber, Jian Ma +1 more

Complete sequencing of ape genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.31.605654
Top 34%
0.582DataRank
Top 34%26 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

DNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.06.631595
N/A
0.292DataRank · unranked
6 citations

Zhenqiao Song, Yang Zhang, Shike Wang, Danqing Wang, Muyu Yang +3 more

DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks

Nature Communications(2025)10.1038/s41467-025-65077-4
N/A
0.165DataRank · unranked
2 citations

Zhenqiao Song, Yang Zhang, Shike Wang, Danqing Wang, Muyu Yang +3 more

HEIMDALL: Disentangling tokenizer design for robust transfer in single-cell foundation models

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.09.687403
N/A
0DataRank · unranked
2 citations

Shahul Alam, Nicholas Ho, Renming Liu, Evan Trop, Shaoheng Liang +4 more

Machine Learning Methods for Exploring Sequence Determinants of 3D Genome Organization

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167666
N/A
0DataRank · unranked
29 citations

Jian Ma, Muyu Yang

Best Practices for Interpretable Machine Learning in Computational Biology

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.28.513978
N/A
0DataRank · unranked
16 citations

Muyu Yang, Wenbo Cui, Joon Sik Kim, Ameet Talwalkar, Jian Ma +1 more

UNADON: transformer-based model to predict genome-wide chromosome spatial position

Bioinformatics(2023)10.1093/bioinformatics/btad246
N/A
0DataRank · unranked
7 citations

Jian Ma, Muyu Yang

Applying interpretable machine learning in computational biology—pitfalls, recommendations and opportunities for new developments

Nature Methods(2024)10.1038/s41592-024-02359-7
N/A
0DataRank · unranked
96 citations

Muyu Yang, Wenbo Cui, Joon Sik Kim, Ameet Talwalkar, Jian Ma +1 more