Emily R. Miraldi

Cincinnati Children's Hospital Medical Center

Also affiliated with University of Cincinnati Medical Center

Immunology and MicrobiologyBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 26 papers. Top paper: “Alveolar epithelial progenitor cells require Nkx2-1 to maintain progenitor-specific epigenomic state during lung homeostasis and regeneration”.

Alveolar epithelial progenitor cells require Nkx2-1 to maintain progenitor-specific epigenomic state during lung homeostasis and regeneration

Nature Communications(2023)10.1038/s41467-023-44184-0

N/A

0.985DataRank · unranked

46 citations

Paranthaman S. Kannan, John Snowball, Matthew Kofron, Joseph A. Wayman, James P. Bridges +4 more

Critical role of IRF1 and BATF in forming chromatin landscape during type 1 regulatory cell differentiation

Nature Immunology(2017)10.1038/ni.3683

N/A

0.710DataRank · unranked

113 citations

Emily R. Miraldi, Maria Pokrovskii, Asaf Madi, Nir Yosef, Ivo Wortman +10 more

Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection

Cell(2020)10.1016/j.cell.2020.05.035

N/A

0DataRank · unranked

45 citations

Matthew Angel, Yixuan Ma, Elizabeth Sloan, Guojun Wang, Carles Martínez‐Romero +49 more

Not Chopped Liver—A Careful, Fate-Mapping Study of Macrophages in NASH

Cell Metabolism(2020)10.1016/j.cmet.2020.08.005

N/A

0DataRank · unranked

7 citations

Emily R. Miraldi, Senad Divanovic, Maria E. Moreno‐Fernandez

Topoisomerase 1 inhibition therapy protects against SARS-CoV-2-induced inflammation and death in animal models

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.01.404483

N/A

0DataRank · unranked

8 citations

Bobo Wing-Yee Mok, Laura Campisi, Tristan X. Jordan, Soner Yildiz, Sreeja Parameswaran +46 more

Genome-wide discovery of SLE genetic risk variant allelic enhancer activity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.20.906701

N/A

0DataRank · unranked

4 citations

Xiaoting Chen, Carmy Forney, Omer Donmez, Daniel Miller, Sreeja Parameswaran +11 more

TOP1 inhibition therapy protects against SARS-CoV-2-induced lethal inflammation

Cell(2021)10.1016/j.cell.2021.03.051

N/A

0DataRank · unranked

123 citations

Bobo Wing-Yee Mok, Laura Campisi, Tristan X. Jordan, Soner Yildiz, Sreeja Parameswaran +48 more

Global discovery of lupus genetic risk variant allelic enhancer activity

Nature Communications(2021)10.1038/s41467-021-21854-5

N/A

0DataRank · unranked

84 citations

Xiaoting Chen, Carmy Forney, Omer Donmez, Daniel Miller, Sreeja Parameswaran +11 more

High performance single-cell gene regulatory network inference at scale: The Inferelator 3.0

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.03.442499

N/A

0DataRank · unranked

11 citations

Christopher A. Jackson, Giuseppe-Antonio Saldi, Andreas Tjärnberg, Aashna Shah, Aaron Watters +11 more

Inflammatory blockade prevents injury to the developing pulmonary gas exchange surface in preterm primates

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.24.449766

N/A

0DataRank · unranked

3 citations

Shelby Steinmeyer, Paranthaman S. Kannan, Jerilyn K. Gray, Courtney M. Jackson, Shibabrata Mukherjee +28 more

High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0

Bioinformatics(2022)10.1093/bioinformatics/btac117

N/A

0DataRank · unranked

79 citations

Christopher A. Jackson, Giuseppe-Antonio Saldi, Andreas Tjärnberg, Aashna Shah, Aaron Watters +11 more

Inflammatory blockade prevents injury to the developing pulmonary gas exchange surface in preterm primates

Science Translational Medicine(2022)10.1126/scitranslmed.abl8574

N/A

0DataRank · unranked

27 citations

Shelby Steinmeyer, Paranthaman S. Kannan, Jerilyn K. Gray, Courtney M. Jackson, Shibabrata Mukherjee +28 more

High-resolution promoter interaction analysis implicates genes involved in the activation of Type 3 Innate Lymphoid Cells in autoimmune disease risk

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.19.512842

N/A

0DataRank · unranked

5 citations

Helen Ray-Jones, Nora Lakes, Rachel A. Brown, Tareian Cazares, Owen Clay +30 more

maxATAC: genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.28.478235

N/A

0DataRank · unranked

3 citations

Faiz W. Rizvi, Balaji Iyer, Xiaoting Chen, Michael Kotliar, Anthony T. Bejjani +10 more

Alveolar epithelial progenitor cells drive lung regeneration via dynamic changes in chromatin topology modulated by lineage-specific Nkx2-1 activity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.30.505919

N/A

0DataRank · unranked

3 citations

Paranthaman S. Kannan, John Snowball, Matthew Kofron, Joseph A. Wayman, James P. Bridges +4 more

maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks

PLoS Computational Biology(2023)10.1371/journal.pcbi.1010863

N/A

0DataRank · unranked

41 citations

Faiz W. Rizvi, Balaji Iyer, Xiaoting Chen, Michael Kotliar, Anthony T. Bejjani +10 more

Accumulation of immune-suppressive CD4 + T cells in aging – tempering inflammaging at the expense of immunity

Seminars in Immunology(2023)10.1016/j.smim.2023.101836

N/A

0DataRank · unranked

9 citations

Alzbeta Godarova, Joseph A. Wayman, Emily R. Miraldi, David A. Hildeman, Claire Chougnet +1 more

Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy

Science Translational Medicine(2024)10.1126/scitranslmed.ade2886

N/A

0DataRank · unranked

71 citations

Shweta Mahajan, Siyuan Ma, Erin D. Jeffery, Xuan Zhang, Anukana Bhattacharjee +8 more

Accessible chromatin maps of inflammatory bowel disease intestine nominate cell-type mediators of genetic disease risk

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.09.579678

N/A

0DataRank · unranked

4 citations

Zi Yang, Elizabeth Angerman, Erin Bonkowski, Ingrid Jurickova, Xiaoting Chen +11 more

Nutrient starvation activates ECM remodeling gene enhancers associated with inflammatory bowel disease risk in fibroblasts

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.06.611754

N/A

0DataRank · unranked

2 citations

Vera Beilinson, Xiaoting Chen, Zi Yang, Joseph A. Wayman, Jasbir Dhaliwal +7 more

Bile acids engage the SIPR-STAT3 signaling axis to modulate regulatory T cell responses in fibrosing cholangiopathies

Journal of Hepatology(2025)10.1016/j.jhep.2025.05.032

N/A

0DataRank · unranked

9 citations

Zi Yang, Immaculeta Osuji, Michelle S. M. A. Damen, Annika Yang vom Hofe, Manavi Singh +21 more

Starvation activates ECM-remodeling gene transcription and putative enhancers in fibroblasts despite inducing quiescence

Cell Reports(2025)10.1016/j.celrep.2025.115896

N/A

0DataRank · unranked

6 citations

Vera Beilinson, Xiaoting Chen, Melanie Gucwa, Lee A. Denson, Emily R. Miraldi +3 more

B‐Cell Repertoire of Children With Atopic Dermatitis Exhibits Altered IgE Maturation Associated With Allergic Food Sensitization

Allergy(2025)10.1111/all.70150

N/A

0DataRank · unranked

2 citations

Carolina Moore, Onyekachi Nwogu, John Kroner, Wan‐Chi Chang, Jeffrey Burkle +14 more

Macrophages drive a fibrogenic gene program of periductal fibroblasts in pediatric primary sclerosing cholangitis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.14.670195

N/A

0DataRank · unranked

0 citations

David Adeleke, Xiangfei Xie, Zi Yang, Annika Yang von Hofe, Manavi Singh +11 more

Epithelial-intrinsic nitric oxide synthase 2 sustains host-microbiota dynamics that promote colitis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.23.677925

N/A

0DataRank · unranked

0 citations

Bryce Hunt, Sekani Cole, Shikha Negi, Amanda Waddell, Zi Yang +9 more

IL-10–producing Tfh cells accumulate with age and link inflammation with age-related immune suppression

Science Advances(2020)10.1126/sciadv.abb0806

N/A

0DataRank · unranked

122 citations

Jana Raynor, Ireti Ogunsulire, Anna Malyshkina, Shibabrata Mukherjee, Sarah A. Hummel +15 more