Julie Overbaugh

Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa

Also affiliated with Fred Hutch Cancer Center

Immunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 52 papers. Top paper: “Comprehensive characterization of the antibody responses to SARS-CoV-2 Spike protein finds additional vaccine-induced epitopes beyond those for mild infection”.

Comprehensive characterization of the antibody responses to SARS-CoV-2 Spike protein finds additional vaccine-induced epitopes beyond those for mild infection

eLife(2022)10.7554/elife.73490

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1.2DataRank · unranked

31 citations

Jared G Galloway, Caitlin Wolf, Jennifer K Logue, Nicholas Franko, Helen Y Chu +3 more

Higher HIV-1 Env gp120-Specific Antibody-Dependent Cellular Cytotoxicity (ADCC) Activity Is Associated with Lower Levels of Defective HIV-1 Provirus

Viruses(2023)10.3390/v15102055

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0.365DataRank · unranked

5 citations

Morgan L. Litchford, Carolyn S. Fish, Zak A. Yaffe, Barbra A. Richardson, Elizabeth Maleche‐Obimbo +5 more

Zika Virus Circulates at Low Levels in Western and Coastal Kenya

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa158

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13 citations

Caroline Kikawa, Dara A. Lehman, John Kinuthia, Alison L. Drake, Walter Jaoko +5 more

Diversity and Function of Maternal HIV-1-Specific Antibodies at the Time of Vertical Transmission

Journal of Virology(2020)10.1128/jvi.01594-19

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0DataRank · unranked

14 citations

Cassandra A. Simonich, Duncan Ralph, Mackenzie M. Shipley, Meghan Garrett, Theodore A. Gobillot +6 more

Phage-DMS: A Comprehensive Method for Fine Mapping of Antibody Epitopes

iScience(2020)10.1016/j.isci.2020.101622

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0DataRank · unranked

31 citations

Hannah L. Itell, Katharine H. D. Crawford, Ryan Basom, Jesse D. Bloom, Julie Overbaugh +1 more

Identification of HIV-1 Envelope Mutations that Enhance Entry Using Macaque CD4 and CCR5

Viruses(2020)10.3390/v12020241

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5 citations

Noah A.J. Cassidy, Adam S. Dingens, Jesse D. Bloom, Julie Overbaugh, Jeremy I. Roop

High resolution profiling of pathways of escape for SARS-CoV-2 spike-binding antibodies

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.16.385278

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17 citations

Jared Galloway, Helen Y. Chu, Hannah L. Itell, Caitlin I. Stoddard, Caitlin R. Wolf +5 more

Phage-DMS: a comprehensive method for fine mapping of antibody epitopes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.11.089342

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0DataRank · unranked

1 citations

Hannah L. Itell, Katharine H. D. Crawford, Ryan Basom, Jesse D. Bloom, Julie Overbaugh +1 more

Epitope profiling reveals binding signatures of SARS-CoV-2 immune response in natural infection and cross-reactivity with endemic human CoVs

Cell Reports(2021)10.1016/j.celrep.2021.109164

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58 citations

Jared Galloway, Helen Y. Chu, Mackenzie M. Shipley, Kevin Sung, Hannah L. Itell +9 more

HIV reservoir quantification using cross-subtype multiplex ddPCR

iScience(2021)10.1016/j.isci.2021.103615

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47 citations

Carolyn S. Fish, Claire Levy, Pavitra Roychoudhury, Daniel B. Reeves, Sean M. Hughes +9 more

High-resolution profiling of pathways of escape for SARS-CoV-2 spike-binding antibodies

Cell(2021)10.1016/j.cell.2021.04.045

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0DataRank · unranked

47 citations

Jared Galloway, Helen Y. Chu, Hannah L. Itell, Caitlin I. Stoddard, Caitlin R. Wolf +6 more

High-resolution mapping of the neutralizing and binding specificities of polyclonal sera post-HIV Env trimer vaccination

eLife(2021)10.7554/elife.64281

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31 citations

Payal Pratap, Keara D. Malone, Sarah K. Hilton, Thomas J. Ketas, Christopher A. Cottrell +6 more

SARS-CoV-2 Antibody Binding and Neutralization in Dried Blood Spot Eluates and Paired Plasma

Microbiology Spectrum(2021)10.1128/spectrum.01298-21

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26 citations

Haidyn Weight, Carolyn S. Fish, Jennifer K. Logue, Nicholas Franko, Caitlin R. Wolf +6 more

Improved HIV-positive infant survival is correlated with high levels of HIV-specific ADCC activity in multiple cohorts

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100254

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25 citations

Nicole E. Naiman, Jennifer A. Slyker, Bruce D. Wines, Barbra A. Richardson, P. Mark Hogarth +7 more

A diverse collection of B cells responded to HIV infection in infant BG505

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100314

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14 citations

Mackenzie M. Shipley, Laura Doepker, Theodore A. Gobillot, Meghan Garrett, Evan M. Cale +7 more

Development of antibody-dependent cell cytotoxicity function in HIV-1 antibodies

eLife(2021)10.7554/elife.63444

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0DataRank · unranked

13 citations

Sonja Danon, Elias Harkins, Duncan Ralph, Zak A. Yaffe, Meghan Garrett +11 more

Derivation of an HIV Risk Score for African Women Who Engage in Sex Work

AIDS and Behavior(2021)10.1007/s10461-021-03235-7

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11 citations

Barbra A. Richardson, Juma Shafi, Emmanuel Kabare, John Kinuthia, Walter Jaoko +4 more

Functional development of a V3/glycan-specific broadly neutralizing antibody isolated from a case of HIV superinfection

eLife(2021)10.7554/elife.68110

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6 citations

Vidya Mangala Prasad, Laura Doepker, Adam S. Dingens, Duncan Ralph, Elias Harkins +10 more

HIV-1 protection: Antibodies move in for the kill

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100428

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3 citations

Julie Overbaugh, Zak A. Yaffe

Comprehensive characterization of the antibody responses to SARS-CoV-2 Spike protein after infection and/or vaccination

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.05.463210

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0DataRank · unranked

2 citations

Jared Galloway, Caitlin R. Wolf, Jennifer K. Logue, Nicholas Franko, Helen Y. Chu +3 more

Macaque-human differences in SARS-CoV-2 Spike antibody response elicited by vaccination or infection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.01.470697

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2 citations

Kevin Sung, Meghan Garrett, Jared Galloway, Megan A. O’Connor, Jesse H. Erasmus +8 more

SARS-CoV-2 antibody binding and neutralization in dried blood spot eluates and paired plasma

medRxiv(2021)10.1101/2021.08.02.21261504

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0DataRank · unranked

1 citations

Haidyn Weight, Carolyn S. Fish, Jennifer K. Logue, Nicholas Franko, Caitlin R. Wolf +6 more

Functional development of a V3-specific broadly neutralizing antibody isolated from a case of HIV superinfection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435484

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0DataRank · unranked

0 citations

Vidya Mangala Prasad, Laura Doepker, Adam S. Dingens, Duncan Ralph, Elias Harkins +10 more

Protocol for high-throughput reservoir quantification across global HIV subtypes using a cross-subtype intact proviral DNA assay

STAR Protocols(2022)10.1016/j.xpro.2022.101681

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13 citations

Noah A.J. Cassidy, Claire Levy, Sean M. Hughes, Keith R. Jerome, Julie Overbaugh +3 more

Detailed analysis of antibody responses to SARS-CoV-2 vaccination and infection in macaques

PLoS Pathogens(2022)10.1371/journal.ppat.1010155

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11 citations

Kevin Sung, Meghan Garrett, Jared Galloway, Jesse H. Erasmus, Jennifer K. Logue +7 more

Distinct Antibody Responses to Endemic Coronaviruses Pre- and Post-SARS-CoV-2 Infection in Kenyan Infants and Mothers

Viruses(2022)10.3390/v14071517

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10 citations

Kevin Sung, Ednah Ojee, Judith Adhiambo, Emily R. Begnel, Jennifer A. Slyker +7 more

Comparison of nucleocapsid and spike antibody ELISAs for determining SARS‐CoV‐2 seropositivity in Kenyan women and infants

Journal of Medical Virology(2022)10.1002/jmv.28221

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2 citations

Prestone Owiti, Emily R. Begnel, Hannah L. Itell, Ednah Ojee, Judith Adhiambo +14 more

Identification of broad, potent antibodies to functionally constrained regions of SARS-CoV-2 spike following a breakthrough infection

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.15.520606

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8 citations

Michael B. Lilly, Tyler N. Starr, Bernadeta Dadonaite, Klaus N. Lovendahl, Jacob T. Croft +11 more

Several cell-intrinsic effectors drive type I interferon-mediated restriction of HIV-1 in primary CD4+ T cells

Cell Reports(2023)10.1016/j.celrep.2023.112556

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22 citations

Daryl Humes, Julie Overbaugh, Hannah L. Itell

phippery: a software suite for PhIP-Seq data analysis

Bioinformatics(2023)10.1093/bioinformatics/btad583

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0DataRank · unranked

12 citations

Kevin Sung, Samuel S. Minot, Meghan Garrett, Caitlin I. Stoddard, Alexandra C. Willcox +5 more

Mapping the neutralizing specificity of human anti-HIV serum by deep mutational scanning

Cell Host & Microbe(2023)10.1016/j.chom.2023.05.025

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0DataRank · unranked

31 citations

Philipp Schommers, Lutz Gieselmann, Katharine H. D. Crawford, Bernadeta Dadonaite, Timothy C. Yu +5 more

Using viral sequence diversity to estimate time of HIV infection in infants

PLoS Pathogens(2023)10.1371/journal.ppat.1011861

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0DataRank · unranked

3 citations

Carolyn S. Fish, Sara Drescher, Noah A.J. Cassidy, Pritha Chanana, Sarah Benki‐Nugent +11 more

Elevated binding and functional antibody responses to SARS-CoV-2 in infants versus mothers

Nature Communications(2023)10.1038/s41467-023-40554-w

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0DataRank · unranked

2 citations

Kevin Sung, Zak A. Yaffe, Haidyn Weight, Guillaume Beaudoin-Bussières, Jared Galloway +12 more

Reconstruction of a polyclonal ADCC antibody repertoire from an HIV-1 non-transmitting mother

iScience(2023)10.1016/j.isci.2023.106762

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0DataRank · unranked

2 citations

Shilei Ding, Kevin Sung, Vrasha Chohan, Lorie Marchitto, Laura Doepker +6 more

Mapping the neutralizing specificity of human anti-HIV serum by deep mutational scanning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.23.533993

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7 citations

Philipp Schommers, Lutz Gieselmann, Katharine H. D. Crawford, Bernadeta Dadonaite, Timothy C. Yu +5 more

Host cell glycosylation selects for infection with CCR5- versus CXCR4-tropic HIV-1

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.05.556399

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2 citations

Daryl Humes, Nell E. Baumgarten, Julie Overbaugh, Hannah L. Itell

Several cell-intrinsic effectors drive type I interferon-mediated restriction of HIV-1 in primary CD4 + T cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.07.527545

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1 citations

Daryl Humes, Julie Overbaugh, Hannah L. Itell

Pro-inflammatory feedback loops define immune responses to pathogenic lentivirus infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.19.533358

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1 citations

Joshua O. Marceau, Samuel W. Kazer, Ira Fleming, Vincent N. Miao, Jennyfer Galvez-Reyes +5 more

Elevated binding and functional antibody responses to SARS-CoV-2 in infants versus mothers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.06.527330

N/A

0DataRank · unranked

0 citations

Kevin Sung, Zak A. Yaffe, Haidyn Weight, Guillaume Beaudoin-Bussières, Jared Galloway +12 more

The S2 subunit of spike encodes diverse targets for functional antibody responses to SARS-CoV-2

PLoS Pathogens(2024)10.1371/journal.ppat.1012383

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21 citations

Meghan Garrett, Michael B. Lilly, Delphine Depierreux, Felicitas Ruiz, Margaret Chi +9 more

Host cell glycosylation selects for infection with CCR5- versus CXCR4-tropic HIV-1

Nature Microbiology(2024)10.1038/s41564-024-01806-7

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12 citations

Jamie Guenthoer, Daryl Humes, Nell E. Baumgarten, Julie Overbaugh, Hannah L. Itell

Delineating the functional activity of antibodies with cross-reactivity to SARS-CoV-2, SARS-CoV-1 and related sarbecoviruses

PLoS Pathogens(2024)10.1371/journal.ppat.1012650

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7 citations

William Foreman, Michael B. Lilly, Viren A. Baharani, Delphine Depierreux, Vrasha Chohan +10 more

Pro-inflammatory feedback loops define immune responses to pathogenic Lentivirus infection

Genome Medicine(2024)10.1186/s13073-024-01290-y

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3 citations

Joshua O. Marceau, Samuel W. Kazer, Ira Fleming, Vincent N. Miao, Jennyfer Galvez-Reyes +6 more

Sexual Violence, Genital Cytokines, and Colposcopy Findings: A Cross-Sectional Study of Women Engaged in Sex Work in Mombasa, Kenya

Sexually Transmitted Diseases(2024)10.1097/olq.0000000000002070

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2 citations

Michelle C. Sabo, Sarah T. Roberts, Linnet N. Masese, R. Scott McClelland, Juma Shafi +4 more

Delineating the functional activity of antibodies with cross-reactivity to SARS-CoV-2, SARS-CoV-1 and related sarbecoviruses

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.24.590836

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1 citations

Will Foreman, Michael B. Lilly, Viren A. Baharani, Delphine Depierreux, Vrasha Chohan +10 more

Brief Report: Group-Based Trajectory Modeling to Determine Long-Term HIV Viral Load Trends Among Children With HIV in Kenya

JAIDS Journal of Acquired Immune Deficiency Syndromes(2024)10.1097/qai.0000000000003439

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0 citations

Irene Njuguna, Anjuli D. Wagner, Barbra A. Richardson, Daisy Chebet, Agnes Langat +10 more

Single-Cell Transcriptomics Reveals Depletion and Dysregulation of Mycobacterium tuberculosis–Specific Th1 and Th17 Cells Early After Acquisition of Human Immunodeficiency Virus

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf354

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3 citations

Krista N Krish, Wendy Whatney, Walter Jaoko, Kishor Mandaliya, Julie Overbaugh +7 more

Interprotomer crosstalk in mosaic viral glycoprotein trimers provides insight into polyvalent immunogen co-assembly

PLoS Pathogens(2025)10.1371/journal.ppat.1013143

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1 citations

Klaus N. Lovendahl, Julie Overbaugh, Kelly K. Lee, Chengbo Chen

Interprotomer Crosstalk in Mosaic Viral Glycoprotein Trimers Provides Insight into Polyvalent Immunogen Co-assembly

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.22.649918

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0 citations

Klaus N. Lovendahl, Julie Overbaugh, Kelly K. Lee, Chengbo Chen

Dynamics of HIV DNA reservoir seeding in a cohort of superinfected Kenyan women

PLoS Pathogens(2020)10.1371/journal.ppat.1008286

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60 citations

Daniel B. Reeves, Elias Harkins, Keshet Ronen, Walter Jaoko, Kishor Mandaliya +7 more

Re-infection with SARS-CoV-2 is associated with increased antibody breadth and potency against diverse sarbecovirus strains

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.03.679858

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0 citations

Felicitas Ruiz, Will Foreman, Vrasha Chohan, Jamie Guenthoer, Delphine Depierreux +8 more

The TOP vector: a new high-titer lentiviral construct for delivery of sgRNAs and transgenes to primary T cells

Molecular Therapy — Methods & Clinical Development(2020)10.1016/j.omtm.2020.10.020

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11 citations

Stephanie Rainwater, Julie Overbaugh, Daryl Humes