Katia Koelle

MedicineMathematics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 40 papers. Top paper: “Influenza A virus reassortment in mammals gives rise to genetically distinct within-host subpopulations”.

Influenza A virus reassortment in mammals gives rise to genetically distinct within-host subpopulations

Nature Communications(2022)10.1038/s41467-022-34611-z

N/A

0.628DataRank · unranked

65 citations

Anish Bagga, Silvia Carnaccini, Lucas M. Ferreri, Ginger Geiger, C. Joaquín Cáceres +12 more

Prevention of respiratory virus transmission by resident memory CD8+ T cells

Nature(2023)10.1038/s41586-023-06937-1

N/A

0.598DataRank · unranked

53 citations

Sarah Michalets, Ananya Saha, Cameron Mattingly, Kirsten Kost, M. Williams +13 more

Indirect benefits are a crucial consideration when evaluating SARS-CoV-2 vaccine candidates

Nature Medicine(2020)10.1038/s41591-020-01172-x

N/A

0.578DataRank · unranked

46 citations

Andrew Sieben, Kristin Nelson, Alicia N.M. Kraay, Walter A. Orenstein, Ben Lopman +3 more

Avian Influenza A Viruses Reassort and Diversify Differently in Mallards and Mammals

Viruses(2021)10.3390/v13030509

N/A

0.505DataRank · unranked

28 citations

Anish Bagga, Juliana DaSilva, Samuel S. Shepard, John Barnes, Susan A. Shriner +3 more

Characterizing Norovirus Transmission from Outbreak Data, United States

Emerging infectious diseases(2020)10.3201/eid2608.191537

N/A

0.489DataRank · unranked

25 citations

Mary E. Wikswo, Aron J. Hall, Katia Koelle, Andreas Handel, Karen Lévy +3 more

Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection

Journal of Virology(2024)10.1128/jvi.01618-23

N/A

0.477DataRank · unranked

23 citations

Katia Koelle, Michael A. Martin, Laura Gibson, Kimberly K. O. Walden, Gloria Rendon +11 more

Transmission Bottleneck Size Estimation from De Novo Viral Genetic Variation

Molecular Biology and Evolution(2023)10.1093/molbev/msad286

N/A

0.449DataRank · unranked

19 citations

Jeremy D. Harris, Michael A. Martin, Katia Koelle, Yike Teresa Shi

Influenza A genomic diversity during human infections underscores the strength of genetic drift and the existence of tight transmission bottlenecks

Virus Evolution(2024)10.1093/ve/veae042

N/A

0.439DataRank · unranked

9 citations

Nick Berg, Katia Koelle, Michael A. Martin

Effect of Norovirus Inoculum Dose on Virus Kinetics, Shedding, and Symptoms

Emerging infectious diseases(2023)10.3201/eid2907.230117

N/A

0.396DataRank · unranked

13 citations

W. Zane Billings, Antone R. Opekun, Mary K. Estes, David Y. Graham, Juan S. León +6 more

Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.21.497047

N/A

0.396DataRank · unranked

13 citations

Katia Koelle, Michael A. Martin, Laura Gibson, Kimberly K. O. Walden, Gloria Rendon +11 more

Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections

PLoS Pathogens(2024)10.1371/journal.ppat.1012131

N/A

0.373DataRank · unranked

11 citations

Dillon S. McBride, Juliana DaSilva, Thomas Stark, Max S. Y. Lau, Samuel S. Shepard +5 more

Quantifying the waning of humoral immunity

Immunity(2025)10.1016/j.immuni.2025.11.007

N/A

0.241DataRank · unranked

4 citations

Hasan Ahmed, Cora Hirst, Katia Koelle, Andreas Handel, Peter Teunis +2 more

Transmission bottleneck size estimation from de novo viral genetic variation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.14.553219

N/A

0.208DataRank · unranked

3 citations

Jeremy D. Harris, Michael A. Martin, Katia Koelle, Teresa Shi

Influenza A virus undergoes compartmentalized replication in vivo dominated by stochastic bottlenecks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.28.462198

N/A

0.165DataRank · unranked

2 citations

Luis A. Haddock, Katarina M. Braun, Victoria Meliopoulos, Brandi Livingston, Rebekah Honce +9 more

Influenza A virus reassortment in mammals gives rise to genetically distinct within-host sub-populations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.08.479600

N/A

0DataRank · unranked

8 citations

Anish Bagga, Silvia Carnaccini, Lucas M. Ferreri, Ginger Geiger, C. Joaquín Cáceres +12 more

SARS-CoV-2 evolution and immune escape in immunocompromised patients treated with exogenous antibodies

medRxiv(2022)10.1101/2022.04.12.22273675

N/A

0DataRank · unranked

3 citations

Ahmed Babiker, Max W. Adelman, Brent E. Allman, Autum Key, Jennifer Kleinhenz +18 more

Epidemiological inference for emerging viruses using segregating sites

Nature Communications(2023)10.1038/s41467-023-38809-7

N/A

0DataRank · unranked

11 citations

Michael A. Martin, Katia Koelle, Yeongseon Park

Influenza A genomic diversity during human infections underscores the strength of genetic drift and the existence of tight transmission bottlenecks

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.18.545481

N/A

0DataRank · unranked

3 citations

Nick Berg, Katia Koelle, Michael A. Martin

Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.23.563581

N/A

0DataRank · unranked

1 citations

Dillon S. McBride, Juliana DaSilva, Thomas Stark, Max S. Y. Lau, Samuel S. Shepard +5 more

Waning immunity drives respiratory virus evolution and reinfection

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.23.604867

N/A

0DataRank · unranked

8 citations

Katia Koelle, Rustom Antia, James J. Bull

Waning immunity drives respiratory virus evolution and reinfection

Evolution Medicine and Public Health(2025)10.1093/emph/eoaf002

N/A

0DataRank · unranked

5 citations

Katia Koelle, Rustom Antia, James J. Bull

Projecting the population-level impact of norovirus vaccines

Epidemics(2025)10.1016/j.epidem.2025.100842

N/A

0DataRank · unranked

3 citations

Brooke Lappe, Benjamin A. Lopman, Max S. Y. Lau, Emma Viscidi, Katherine Carlson +1 more

Immune pressure is key to understanding observed patterns of respiratory virus evolution in prolonged infections

Virus Evolution(2025)10.1093/ve/veaf054

N/A

0DataRank · unranked

2 citations

Yintong Rita Wang, Katia Koelle, Alfred Coats

Quantifying the waning of humoral immunity

medRxiv(2025)10.1101/2025.05.13.25327542

N/A

0DataRank · unranked

2 citations

Hasan Ahmed, Cora Hirst, Katia Koelle, Andreas Handel, Peter Teunis +2 more

Genetic drift acts strongly on within-host influenza virus populations during acute infection but does not act alone

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.27.672713

N/A

0DataRank · unranked

2 citations

Michael A. Martin, Daniel B. Weissman, Katia Koelle, Yike Teresa Shi

Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel

Nature Communications(2020)10.1038/s41467-020-19248-0

N/A

0DataRank · unranked

163 citations

Michael A. Martin, Noam Harel, Omer Tirosh, Talia Kustin, Moran Meir +14 more

Immune Pressure is Key to Understanding Observed Patterns of Respiratory Virus Evolution in Prolonged Infections

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.28.651059

N/A

0DataRank · unranked

0 citations

Yintong Rita Wang, Katia Koelle, Alfred Coats

Revealing fine-scale spatiotemporal differences in SARS-CoV-2 introduction and spread

Nature Communications(2020)10.1038/s41467-020-19346-z

N/A

0DataRank · unranked

47 citations

Katarina M. Braun, Kasen K. Riemersma, Michael A. Martin, Peter Halfmann, Chelsea M. Crooks +19 more

CpG-creating mutations are costly in many human viruses

Evolutionary Ecology(2020)10.1007/s10682-020-10039-z

N/A

0DataRank · unranked

16 citations

Sarina Qin, Ryan Winstead, Jasmeen Kaur, Kaho H. Tisthammer, E. Geo Pineda +51 more

Intrahost cytomegalovirus population genetics following antibody pretreatment in a monkey model of congenital transmission

PLoS Pathogens(2020)10.1371/journal.ppat.1007968

N/A

0DataRank · unranked

13 citations

Cody S. Nelson, Dollnovan Tran, Peter A. Barry, Amitinder Kaur, Katia Koelle +2 more

Recombinant SARS-CoV-2 genomes are currently circulating at low levels

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.05.238386

N/A

0DataRank · unranked

49 citations

Andrew S. Neish, Anice C. Lowen, Katia Koelle, David VanInsberghe

Considering indirect benefits is critical when evaluating SARS-CoV-2 vaccine candidates

medRxiv(2020)10.1101/2020.08.07.20170456

N/A

0DataRank · unranked

18 citations

Andrew Sieben, Kristin Nelson, Alicia N.M. Kraay, Ben Lopman, Andreas Handel +2 more

Lineage-specific protection and immune imprinting shape the age distributions of influenza B cases

medRxiv(2020)10.1101/2020.09.30.20204909

N/A

0DataRank · unranked

7 citations

Celeste M. Donato, Philip Arevalo, Guus F. Rimmelzwaan, Timothy Wood, Liza Lopez +5 more

Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck

PLoS Pathogens(2021)10.1371/journal.ppat.1009373

N/A

0DataRank · unranked

123 citations

Gage K. Moreno, Peter Halfmann, Emma B. Hodcroft, David Baker, Emma C. Boehm +10 more

Lineage-specific protection and immune imprinting shape the age distributions of influenza B cases

Nature Communications(2021)10.1038/s41467-021-24566-y

N/A

0DataRank · unranked

40 citations

Celeste M. Donato, Philip Arevalo, Guus F. Rimmelzwaan, Timothy J. Wood, Liza Lopez +5 more

Unrecognized introductions of SARS-CoV-2 into the state of Georgia shaped the early epidemic

medRxiv(2021)10.1101/2021.09.19.21262615

N/A

0DataRank · unranked

0 citations

Michael A. Martin, Charles Marvil, Stephanie Bellman, Robert A. Petit, Heath L. Bradley +8 more

SARS-CoV-2 Evolution and Immune Escape in Immunocompromised Patients

New England Journal of Medicine(2022)10.1056/nejmc2202861

N/A

0DataRank · unranked

110 citations

Ahmed Babiker, Max W. Adelman, Brent E. Allman, Autum Key, Jennifer Kleinhenz +18 more

Influenza A virus undergoes compartmentalized replication in vivo dominated by stochastic bottlenecks

Nature Communications(2022)10.1038/s41467-022-31147-0

N/A

0DataRank · unranked

67 citations

Luis A. Haddock, Katarina M. Braun, Victoria Meliopoulos, Brandi Livingston, Rebekah Honce +9 more

Unrecognized introductions of SARS-CoV-2 into the US state of Georgia shaped the early epidemic

Virus Evolution(2022)10.1093/ve/veac011

N/A

0DataRank · unranked

5 citations

Michael A. Martin, Charles Marvil, Stephanie Bellman, Robert A. Petit, Heath L. Bradley +11 more

Masks Do No More Than Prevent Transmission: Theory and Data Undermine the Variolation Hypothesis

medRxiv(2022)10.1101/2022.06.28.22277028

N/A

0DataRank · unranked

10 citations

Jack J. Lin, Huisheng Zhu, Rustom Antia, Anice C. Lowen, Daniel B. Weissman +1 more