Liam Paninski

NeuroscienceEngineeringComputer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

7.1Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans

Cell(2020)10.1016/j.cell.2020.12.012

Top 5%

4.1DataRank

Top 5%327 citations

Albert Lin, Amin Nejatbakhsh, Erdem Varol, Ruoxi Sun, Gonzalo E. Mena +5 more

Papers

Driven by 45 papers — median percentile 87. Top paper: “NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans”.

NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans

Cell(2020)10.1016/j.cell.2020.12.012

Top 5%

4.1DataRank

Top 5%327 citations

Albert Lin, Amin Nejatbakhsh, Erdem Varol, Ruoxi Sun, Gonzalo E. Mena +5 more

A Brain-Wide Map of Neural Activity during Complex Behaviour

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.04.547681

Top 13%

1.6DataRank

Top 13%77 citations

Brandon Benson, Julius Benson, Daniel Birman, Niccolò Bonacchi, Matteo Carandini +49 more

Multiscale and multimodal reconstruction of cortical structure and function

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.14.338681

Top 15%

1.4DataRank

Top 15%42 citations

Thomas Macrina, J. Alexander Bae, Runzhe Yang, Alyssa M. Wilson, Casey M Schneider-Mizell +40 more

Coordination and persistence of aggressive visual communication in Siamese fighting fish

Cell Reports(2025)10.1016/j.celrep.2024.115208

N/A

0.284DataRank · unranked

5 citations

Amy L. Norovich, Jessica E. Burke, Matthew R Whiteway, Paula R. Villamayor, Pei-Yin Shih +4 more

Neuroscience Cloud Analysis As a Service

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.11.146746

N/A

0DataRank · unranked

20 citations

Ian Kinsella, Shreya Saxena, E. Kelly Buchanan, João Couto, John D. Briggs +6 more

High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.26.920256

N/A

0DataRank · unranked

4 citations

Yoav Adam, Linlin Z. Fan, Urs L. Böhm, Ian Kinsella, Ding Zhou +3 more

High-fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo

Cell Reports(2021)10.1016/j.celrep.2021.108954

N/A

0DataRank · unranked

41 citations

Yoav Adam, Linlin Z. Fan, Urs L. Böhm, Ian Kinsella, Ding Zhou +6 more

Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009439

N/A

0DataRank · unranked

37 citations

Dan Biderman, Yoni Friedman, Mario Dipoppa, E. Kelly Buchanan, Anqi Wu +12 more

BARcode DEmixing through Non-negative Spatial Regression (BarDensr)

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008256

N/A

0DataRank · unranked

31 citations

Jackson Loper, Xiaoyin Chen, Alex Vaughan, Anthony M. Zador, Liam Paninski +1 more

Chronic, cortex-wide imaging of specific cell populations during behavior

Nature Protocols(2021)10.1038/s41596-021-00527-z

N/A

0DataRank · unranked

9 citations

Simon Musall, Xiaonan Richard Sun, Anup Khanal, Steven Gluf, Shreya Saxena +6 more

Three-dimensional spike localization and improved motion correction for Neuropixels recordings

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.05.467503

N/A

0DataRank · unranked

40 citations

Erdem Varol, Hyun Dong Lee, Nishchal Dethe, Liam Paninski, Julien Boussard

Visualizing the organization and differentiation of the male-specific nervous system of C. elegans

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.06.438718

N/A

0DataRank · unranked

6 citations

Eviatar Yemini, Amin Nejatbakhsh, Erdem Varol, Robert W. Fernandez, Neda Masoudi +3 more

Neuroscience Cloud Analysis As a Service: An open-source platform for scalable, reproducible data analysis

Neuron(2022)10.1016/j.neuron.2022.06.018

N/A

0DataRank · unranked

40 citations

Ian Kinsella, Shreya Saxena, E. Kelly Buchanan, João Couto, John D. Briggs +6 more

Blind demixing methods for recovering dense neuronal morphology from barcode imaging data

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009991

N/A

0DataRank · unranked

4 citations

Jackson Loper, Pengcheng Zhou, Liam Paninski, Shuonan Chen

Rapid learning of neural circuitry from holographic ensemble stimulation enabled by model-based compressed sensing

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.14.507926

N/A

0DataRank · unranked

15 citations

Marta Gajowa, Benjamin Antin, Masato Sadahiro, Hillel Adesnik, Liam Paninski +1 more

Robust Online Multiband Drift Estimation in Electrophysiology Data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.04.519043

N/A

0DataRank · unranked

8 citations

Angelique C. Paulk, Yoav Kfir, Eric M. Trautmann, Samuel Garcia, Domokos Meszéna +10 more

Brain-wide representations of prior information in mouse decision-making

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.04.547684

N/A

0DataRank · unranked

58 citations

Félix Hubert, Luigi Acerbi, Brandon Benson, Julius Benson, Daniel Birman +54 more

Ultra-high density electrodes improve detection, yield, and cell type identification in neuronal recordings

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.23.554527

N/A

0DataRank · unranked

31 citations

Andrew M. Shelton, Jordan R Shaker, Julien Boussard, Jennifer Colonell, Daniel Birman +28 more

Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.28.538703

N/A

0DataRank · unranked

17 citations

Matthew R Whiteway, Cole Hurwitz, Nicholas Greenspan, Robert S Lee, Ankit Vishnubhotla +15 more

Dendritic excitations govern back-propagation via a spike-rate accelerometer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.02.543490

N/A

0DataRank · unranked

13 citations

David Wong-Campos, Daniel G. Itkis, Byung Hun Lee, Yitong Qi, Hunter C. Davis +9 more

Robust Online Multiband Drift Estimation in Electrophysiology Data

PubMed(2023)10.1109/icassp49357.2023.10095487

N/A

0DataRank · unranked

8 citations

Angelique C. Paulk, Yoav Kfir, Eric M. Trautmann, Domokos Meszéna, William Muñoz +8 more

Bayesian target optimisation for high-precision holographic optogenetics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.25.542307

N/A

0DataRank · unranked

3 citations

Marta Gajowa, Hillel Adesnik, Liam Paninski, Marcus A. Triplett

Bypassing spike sorting: Density-based decoding using spike localization from dense multielectrode probes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.21.558869

N/A

0DataRank · unranked

3 citations

Tian-Xiao He, Julien Boussard, Charlie Windolf, Olivier Winter, Eric M. Trautmann +8 more

maskNMF: A denoise-sparsen-detect approach for extracting neural signals from dense imaging data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.14.557777

N/A

0DataRank · unranked

2 citations

Ian Kinsella, Pengcheng Zhou, Melissa M. Wu, Daisong Pan, Jiang Lan Fan +7 more

Removing direct photocurrent artifacts in optogenetic connectivity mapping data via constrained matrix factorization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.13.548849

N/A

0DataRank · unranked

1 citations

Masato Sadahiro, Marta Gajowa, Marcus A. Triplett, Hillel Adesnik, Liam Paninski +1 more

Learning Probabilistic Piecewise Rigid Atlases of Model Organisms via Generative Deep Networks

Lecture notes in computer science(2023)10.1007/978-3-031-34048-2_26

N/A

0DataRank · unranked

0 citations

Neel Dey, Vivek Venkatachalam, Eviatar Yemini, Liam Paninski, Erdem Varol +1 more

Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling and cloud-native open-source tools

Nature Methods(2024)10.1038/s41592-024-02319-1

N/A

0DataRank · unranked

66 citations

Matthew R Whiteway, Cole Hurwitz, Nicholas Greenspan, Robert S. Lee, Ankit Vishnubhotla +90 more

Versatile multiple object tracking in sparse 2D/3D videos via deformable image registration

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012075

N/A

0DataRank · unranked

13 citations

Amin Nejatbakhsh, Mahdi Torkashvand, Sahana Gangadharan, Maedeh Seyedolmohadesin, Jinmahn Kim +3 more

Removing direct photocurrent artifacts in optogenetic connectivity mapping data via constrained matrix factorization

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012053

N/A

0DataRank · unranked

5 citations

Masato Sadahiro, Marta Gajowa, Marcus A. Triplett, Hillel Adesnik, Liam Paninski +1 more

A study of animal action segmentation algorithms across supervised, unsupervised, and semi-supervised learning paradigms

Neurons Behavior Data analysis and Theory(2024)10.51628/001c.127770

N/A

0DataRank · unranked

3 citations

Evan Schaffer, Neeli Mishra, Nathaniel J Miska, Liam Paninski, Matthew R Whiteway +1 more

Rarely categorical and highly separable: how neural representations change along the cortical hierarchy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.15.623878

N/A

0DataRank · unranked

24 citations

Shuqi Wang, Samuel P. Muscinelli, Liam Paninski, Stefano Fusi, Lorenzo Posani

Reproducibility of in vivo electrophysiological measurements in mice

eLife(2024)10.7554/elife.100840

N/A

0DataRank · unranked

15 citations

Julius Benson, Jai Bhagat, Dan Biderman, Daniel Birman, Niccolò Bonacchi +40 more

In vivo cell-type and brain region classification via multimodal contrastive learning

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.05.622159

N/A

0DataRank · unranked

10 citations

Hanrui Lyu, Xu E, Charlie Windolf, Eric Lee, Fan Yang +10 more

Exploiting correlations across trials and behavioral sessions to improve neural decoding

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.14.613047

N/A

0DataRank · unranked

4 citations

Hanrui Lyu, Cole Hurwitz, Shuqi Wang, Charles Findling, Yanchen Wang +5 more

Dendritic excitations govern back-propagation via a spike-rate accelerometer

Nature Communications(2025)10.1038/s41467-025-55819-9

N/A

0DataRank · unranked

26 citations

J. David Wong-Campos, Daniel G. Itkis, Byung Hun Lee, Yitong Qi, Hunter C. Davis +9 more

Ultra-high-density Neuropixels probes improve detection and identification in neuronal recordings

Neuron(2025)10.1016/j.neuron.2025.08.030

N/A

0DataRank · unranked

21 citations

Andrew M. Shelton, Jordan R Shaker, Julien Boussard, Jennifer Colonell, Daniel Birman +29 more

DREDge: robust motion correction for high-density extracellular recordings across species

Nature Methods(2025)10.1038/s41592-025-02614-5

N/A

0DataRank · unranked

20 citations

Han Yu, Angelique C. Paulk, Domokos Meszéna, William Muñoz, Julien Boussard +35 more

A common computational and neural anomaly across mouse models of autism

Nature Neuroscience(2025)10.1038/s41593-025-01965-8

N/A

0DataRank · unranked

6 citations

Edoardo Balzani, Luigi Acerbi, Julius Benson, Dora E. Angelaki, Daniel Birman +42 more

Rapid learning of neural circuitry from holographic ensemble stimulation enabled by model-based compressed sensing

Nature Neuroscience(2025)10.1038/s41593-025-02053-7

N/A

0DataRank · unranked

5 citations

Marta Gajowa, Benjamin Antin, Masato Sadahiro, Hillel Adesnik, Liam Paninski +1 more

Reproducibility of in vivo electrophysiological measurements in mice

eLife(2025)10.7554/elife.100840.3

N/A

0DataRank · unranked

5 citations

Julius Benson, Jai Bhagat, Dan Biderman, Daniel Birman, Niccolò Bonacchi +40 more

Exploiting correlations across trials and behavioral sessions to improve neural decoding

Neuron(2025)10.1016/j.neuron.2025.10.026

N/A

0DataRank · unranked

2 citations

Hanrui Lyu, Cole Hurwitz, Shuqi Wang, Charles Findling, Yanchen Wang +5 more

Computational optimization of two-photon holographic stimulation sites in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.31.667911

N/A

0DataRank · unranked

0 citations

Edgar Bäumler, Alex Prodan, Rokas Stonis, Darcy S. Peterka, Michael Häusser +2 more

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007791

N/A

0DataRank · unranked

94 citations

Ian Kinsella, Simon Musall, Sharon Kim, József Mészáros, David N. Thibodeaux +6 more

Deep Graph Pose: a semi-supervised deep graphical model for improved animal pose tracking

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.20.259705

N/A

0DataRank · unranked

51 citations

E. Kelly Buchanan, Matthew R Whiteway, Michael Schartner, Guido T. Meijer, Jean‐Paul Noel +11 more

Recurrent Switching Dynamical Systems Models for Multiple Interacting Neural Populations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.21.349282

N/A

0DataRank · unranked

40 citations

Matthew R Whiteway, John P. Cunningham, Liam Paninski, Scott W. Linderman, Joshua I. Glaser

Liam Paninski

Indexed papers

Top data-sharing exemplar

Papers