Facundo M. Fernández

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

4.1Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Temporal dynamics of the multi-omic response to endurance exercise training

Nature(2024)10.1038/s41586-023-06877-w

Top 7%

3.4DataRank

Top 7%248 citations

Primary authors, Lead Analysts, David Amar, Nicole R. Gay, Pierre M. Jean Beltran +95 more

Papers

Driven by 48 papers — median percentile 60. Top paper: “Temporal dynamics of the multi-omic response to endurance exercise training”.

Temporal dynamics of the multi-omic response to endurance exercise training

Nature(2024)10.1038/s41586-023-06877-w

Top 7%

3.4DataRank

Top 7%248 citations

Primary authors, Lead Analysts, David Amar, Nicole R. Gay, Pierre M. Jean Beltran +95 more

Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures

Cell Genomics(2024)10.1016/j.xgen.2023.100421

N/A

0.928DataRank · unranked

38 citations

Hanna Pinças, Gregory R. Smith, Elena Zaslavsky, Yongchao Ge, Mary Anne S. Amper +75 more

metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics

Metabolites(2024)10.3390/metabo14020125

N/A

0.507DataRank · unranked

5 citations

Jennifer L. Meijer, Tong Shen, Oliver Fiehn, David A. Gaul, Facundo M. Fernández +6 more

Molecular Transducers of Physical Activity Consortium (MoTrPAC): human studies design and protocol

Journal of Applied Physiology(2024)10.1152/japplphysiol.00102.2024

Top 40%

0.483DataRank

Top 40%21 citations

John M. Jakicic, Wendy M. Kohrt, Joseph A. Houmard, Michael E. Miller, Shlomit Radom‐Aizik +89 more

Sexual dimorphism and the multi-omic response to exercise training in rat subcutaneous white adipose tissue

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.03.527012

N/A

0.312DataRank · unranked

7 citations

James Sanford, Tyler J. Sagendorf, Zhenxin Hou, Pasquale Nigro, Katie L. Whytock +21 more

A Large Language Model–Powered Map of Metabolomics Research

Analytical Chemistry(2025)10.1021/acs.analchem.5c01672

Top 70%

0.165DataRank

Top 70%2 citations

Varun S. Yelluru, Aditya Simhadri, Facundo M. Fernández, Olatomiwa O. Bifarin

Uncovering Xenobiotics in the Dark Metabolome using Ion Mobility Spectrometry, Mass Defect Analysis and Machine Learning

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.21.469449

N/A

0DataRank · unranked

1 citations

Markace A. Rainey, Chandler A. Watson, James N. Dodds, Facundo M. Fernández, Erin Baker +1 more

Machine Learning Approaches to Identify Discriminative Signatures of Volatile Organic Compounds (VOCs) from Bacteria and Fungi Using SPME-DART-MS

Metabolites(2022)10.3390/metabo12030232

N/A

0DataRank · unranked

29 citations

Stephen Zambrzycki, Joshua M. Levy, Annette Esper, Jennifer K. Frediani, Cassandra L. Quave +3 more

Lipidome Alterations following Mild Traumatic Brain Injury in the Rat

Metabolites(2022)10.3390/metabo12020150

N/A

0DataRank · unranked

22 citations

Alexis N. Pulliam, David A. Gaul, Samuel G. Moore, Michelle C. LaPlaca, Facundo M. Fernández +1 more

Targeted Microchip Capillary Electrophoresis-Orbitrap Mass Spectrometry Metabolomics to Monitor Ovarian Cancer Progression

Metabolites(2022)10.3390/metabo12060532

N/A

0DataRank · unranked

8 citations

Sylvia R. Yun, David A. Gaul, Andro Botros, Eun Young Park, Olga Kim +3 more

An anchored experimental design and meta-analysis approach to address batch effects in large-scale metabolomics

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.930204

N/A

0DataRank · unranked

4 citations

Brianna M. Garcia, Gonçalo J. Gouveia, Alison M. Morse, Zihao Liu, Carter K. Asef +8 more

Temporal dynamics of the multi-omic response to endurance exercise training across tissues

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.21.508770

N/A

0DataRank · unranked

20 citations

David Amar, Nicole R. Gay, Pierre M. Jean Beltran, Joshua Adkins, José Juan Almagro Armenteros +95 more

An anchored experimental design and meta-analysis approach to address batch effects in large-scale metabolomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.25.485859

N/A

0DataRank · unranked

2 citations

Brianna M. Garcia, Gonçalo J. Gouveia, Alison M. Morse, Zihao Liu, Carter K. Asef +8 more

CCS Predictor 2.0: An Open-Source Jupyter Notebook Tool for Filtering Out False Positives in Metabolomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.09.503345

N/A

0DataRank · unranked

2 citations

Chandler A. Watson, Carter K. Asef, MaKayla Foster, Erin Baker, Facundo M. Fernández +1 more

Divergent Skeletal Muscle Metabolomic Signatures of Different Exercise Training Modes Independently Predict Cardiometabolic Risk Factors

Diabetes(2023)10.2337/db23-0142

N/A

0DataRank · unranked

21 citations

Arathi Prabha Kumar, David A. Gaul, Samuel G. Moore, Surendra Dasari, Matthew M. Robinson +5 more

Unknown Metabolite Identification Using Machine Learning Collision Cross-Section Prediction and Tandem Mass Spectrometry

Analytical Chemistry(2023)10.1021/acs.analchem.2c03749

N/A

0DataRank · unranked

32 citations

Markace A. Rainey, Brianna M. Garcia, Gonçalo J. Gouveia, Amanda O. Shaver, Franklin E. Leach +5 more

Identifying metabolic shifts in Crohn's disease using 'omics-driven contextualized computational metabolic network models

Scientific Reports(2023)10.1038/s41598-022-26816-5

N/A

0DataRank · unranked

21 citations

Yash Sharma, Fatima Zulqarnain, Brooklyn McGrew, Aman Shrivastava, Lubaina Ehsan +11 more

Triboelectric nanogenerator-coated blade spray mass spectrometry for volume-limited drug analysis

International Journal of Mass Spectrometry(2023)10.1016/j.ijms.2023.117164

N/A

0DataRank · unranked

7 citations

Facundo M. Fernández, Xin Ma

Triboelectric nanogenerators: Low-cost power supplies for improved electrospray ionization

International Journal of Mass Spectrometry(2023)10.1016/j.ijms.2023.117167

N/A

0DataRank · unranked

6 citations

Joseph Corstvet, Facundo M. Fernández, Daniel D. Vallejo

Machine Learning Reveals Lipidome Remodeling Dynamics in a Mouse Model of Ovarian Cancer

Journal of Proteome Research(2023)10.1021/acs.jproteome.3c00226

N/A

0DataRank · unranked

3 citations

Samyukta Sah, David A. Gaul, Samuel G. Moore, Ruihong Chen, Murugesan Palaniappan +4 more

The mitochondrial multi-omic response to exercise training across tissues

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.13.523698

N/A

0DataRank · unranked

12 citations

Nicole R. Gay, David Jimenez‐Morales, Pierre M. Jean Beltran, Megan E. Ramaker, Archana N. Raja +24 more

The unknown lipids project: harmonized methods improve compound identification and data reproducibility in an inter-laboratory untargeted lipidomics study

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.01.526566

N/A

0DataRank · unranked

5 citations

Ciara Conway, Kaitlin R. Rempfert, Jennifer Kyle, Sean Colby, David A. Gaul +11 more

Automated machine learning and explainable AI (AutoML-XAI) for metabolomics: improving cancer diagnostics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.26.564244

N/A

0DataRank · unranked

4 citations

Facundo M. Fernández, Olatomiwa O. Bifarin

Machine Learning Reveals Lipidome Remodeling Dynamics in a Mouse Model of Ovarian Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.04.520434

N/A

0DataRank · unranked

1 citations

Samyukta Sah, David A. Gaul, Samuel G. Moore, Ruihong Chen, Murugesan Palaniappan +4 more

Serum Lipidome Profiling Reveals a Distinct Signature of Ovarian Cancer in Korean Women

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.05.560751

N/A

0DataRank · unranked

1 citations

Olatomiwa O. Bifarin, Samuel G. Moore, David A. Gaul, Hyewon Chung, Hanbyoul Cho +6 more

Decoding the Molecular Universe -- Workshop Report

arXiv (Cornell University)(2023)10.48550/arxiv.2311.11437

N/A

0DataRank · unranked

0 citations

Joshua Adkins, P. B. Armentrout, Patrick Chain, Fanny Chu, Courtney D. Corley +28 more

The mitochondrial multi-omic response to exercise training across rat tissues

Cell Metabolism(2024)10.1016/j.cmet.2023.12.021

N/A

0DataRank · unranked

75 citations

Nicole R. Gay, David Jimenez‐Morales, Pierre M. Jean Beltran, Megan E. Ramaker, Archana N. Raja +95 more

Sexual dimorphism and the multi-omic response to exercise training in rat subcutaneous white adipose tissue

Nature Metabolism(2024)10.1038/s42255-023-00959-9

N/A

0DataRank · unranked

54 citations

James Sanford, Tyler J. Sagendorf, Zhenxin Hou, Pasquale Nigro, Katie L. Whytock +95 more

Automated Machine Learning and Explainable AI (AutoML-XAI) for Metabolomics: Improving Cancer Diagnostics

Journal of the American Society for Mass Spectrometry(2024)10.1021/jasms.3c00403

N/A

0DataRank · unranked

38 citations

Facundo M. Fernández, Olatomiwa O. Bifarin

Physiological Adaptations to Progressive Endurance Exercise Training in Adult and Aged Rats: Insights from the Molecular Transducers of Physical Activity Consortium (MoTrPAC)

Function(2024)10.1093/function/zqae014

N/A

0DataRank · unranked

29 citations

Tyler J. Sagendorf, Gina M. Many, Ana K Lira, Luís Gustavo Oliveira de Sousa, Dam Bae +74 more

The impact of exercise on gene regulation in association with complex trait genetics

Nature Communications(2024)10.1038/s41467-024-45966-w

N/A

0DataRank · unranked

24 citations

Nicole R. Gay, MoTrPAC Study Group, Joshua N. Adkins, Brent G. Albertson, David Amar +95 more

Serum Lipidome Profiling Reveals a Distinct Signature of Ovarian Cancer in Korean Women

Cancer Epidemiology Biomarkers & Prevention(2024)10.1158/1055-9965.epi-23-1293

N/A

0DataRank · unranked

10 citations

Olatomiwa O. Bifarin, Samuel G. Moore, David A. Gaul, Hyewon Chung, Sun Young Kwon +6 more

Integrative Analysis of Cytokine and Lipidomics Datasets Following Mild Traumatic Brain Injury in Rats

Metabolites(2024)10.3390/metabo14030133

N/A

0DataRank · unranked

4 citations

Alyssa F. Pybus, David A. Gaul, Samuel G. Moore, Levi B. Wood, Facundo M. Fernández +2 more

Triboelectric Nanogenerators for the Masses: A Low-Cost Do-It-Yourself Pulsed Ion Source for Sample-Limited Applications

Journal of the American Society for Mass Spectrometry(2024)10.1021/jasms.4c00010

N/A

0DataRank · unranked

3 citations

Daniel D. Vallejo, Facundo M. Fernández, Carter K. Asef

Endurance Exercise Training Alters Lipidomic Profiles of Plasma and Eight Tissues in Rats: a MoTrPAC study

Research Square(2024)10.21203/rs.3.rs-5263273/v1

N/A

0DataRank · unranked

1 citations

Zhenxin Hou, Chih‐Yu Chen, David A. Gaul, Tiantian Zhang, Samuel G. Moore +9 more

Metabolomics of Papanicolaou Tests for the Discovery of Ovarian Cancer Biomarkers

Metabolites(2024)10.3390/metabo14110600

N/A

0DataRank · unranked

0 citations

Erik M. Schwiebert, Samuel G. Moore, Ying Liu, David A. Gaul, Kristin L.M. Boylan +3 more

Discovery of Na v 1.7 Inhibitors through the Screening of Marine Natural Product Extracts

Journal of Natural Products(2025)10.1021/acs.jnatprod.5c00978

N/A

0DataRank · unranked

1 citations

Bhuwan K. Chhetri, Ghada M. Abdelwahab, Riya Bhanushali, Anne Marie Sweeney-Jones, Madison Greene +8 more

Sexually distinct multi-omic responses to progressive endurance exercise training in the rat lung

American Journal of Respiratory Cell and Molecular Biology(2025)10.1165/rcmb.2025-0249oc

N/A

0DataRank · unranked

1 citations

Tyler J. Sagendorf, Hugh Mitchell, James Sanford, Samuel M. Cohen, Ravi Misra +77 more

A Spatial Metabolomics Annotation Workflow Leveraging Cyclic Ion Mobility and Machine Learning-Predicted Collision Cross Sections

Journal of the American Society for Mass Spectrometry(2025)10.1021/jasms.5c00090

N/A

0DataRank · unranked

1 citations

Eric C. Gier, Viraj A. Master, Rebecca S. Arnold, John A. Petros, Facundo M. Fernández +1 more

Endurance exercise drives temporal and sexual dimorphic multi-omic adaptations in liver metabolism-Findings from MoTrPAC

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.16.652859

N/A

0DataRank · unranked

0 citations

Edziu Franczak, Nicole R. Gay, Gina M. Many, Tyler J. Sagendorf, James Sanford +13 more

Senescence-Induced Lipidome Alterations in Mesenchymal Stromal Cells

Journal of Proteome Research(2025)10.1021/acs.jproteome.5c00355

N/A

0DataRank · unranked

0 citations

Joseph Corstvet, Reesha K. Vayalakkara, Facundo M. Fernández, Gilad Doron, Molly E. Ogle

Molecular Transducers of Physical Activity Consortium (MoTrPAC): Mapping the Dynamic Responses to Exercise

Cell(2020)10.1016/j.cell.2020.06.004

N/A

0DataRank · unranked

300 citations

Christopher D. Nogiec, Maléne E. Lindholm, Joshua Adkins, David Amar, Surendra Dasari +80 more

Temporal Multi-Omic Analysis Uncovers Sex-Biased Molecular Programs Underlying Skeletal Muscle Adaptation to Endurance Training

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.26.696612

N/A

0DataRank · unranked

0 citations

Christopher Jin, Nicholas Day, Gayatri Iyer, Gergory Smith, James Sanford +30 more

Sub-nanoliter metabolomics via mass spectrometry to characterize volume-limited samples

Nature Communications(2020)10.1038/s41467-020-19444-y

N/A

0DataRank · unranked

67 citations

Marcos Bouza, Changsheng Wu, Hengyu Guo, Danning Huang, Gilad Doron +5 more

Responding to the Pandemic of Falsified Medicines

UNC Libraries(2020)10.17615/a3hj-2h94

N/A

0DataRank · unranked

0 citations

Gaurvika M.L. Nayyar, Megan Kendall, Paul N. Newton, Joel G. Breman, Jocalyn P Clark +4 more

Urine-Based Metabolomics and Machine Learning Reveals Metabolites Associated with Renal Cell Carcinoma Stage

Cancers(2021)10.3390/cancers13246253

N/A

0DataRank · unranked

22 citations

David A. Gaul, Samyukta Sah, Rebecca S. Arnold, Kenneth Ogan, Viraj A. Master +6 more

Comparison of High-Resolution Fourier Transform Mass Spectrometry Platforms for Putative Metabolite Annotation

Analytical Chemistry(2021)10.1021/acs.analchem.1c02224

N/A

0DataRank · unranked

13 citations

Marcos Bouza, David A. Gaul, Franklin E. Leach, I. Jonathan Amster, Frank C. Schroeder +3 more

Triboelectric Nanogenerator Ion Mobility–Mass Spectrometry for In-Depth Lipid Annotation

Analytical Chemistry(2021)10.1021/acs.analchem.0c05145

N/A

0DataRank · unranked

17 citations

Yafeng Li, Aurelia Chi Wang, Zhong Lin Wang, Facundo M. Fernández, Marcos Bouza

Facundo M. Fernández

Indexed papers

Top data-sharing exemplar

Papers