Hongkui Zeng

NeuroscienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

50.1Author DataRank

Indexed papers

26in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 26 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas

Neuron(2017)10.1016/j.neuron.2017.10.007

Top 4%

5.1DataRank

Top 4%301 citations

Daniel H. Geschwind, Arnold R. Kriegstein, John Ngai, Pavel Osten, Damon Polioudakis +5 more

Papers

Driven by 102 papers — median percentile 86. Top paper: “The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas”.

The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas

Neuron(2017)10.1016/j.neuron.2017.10.007

Top 4%

5.1DataRank

Top 4%301 citations

Daniel H. Geschwind, Arnold R. Kriegstein, John Ngai, Pavel Osten, Damon Polioudakis +5 more

Molecularly defined and spatially resolved cell atlas of the whole mouse brain

Nature(2023)10.1038/s41586-023-06808-9

Top 5%

4.8DataRank

Top 5%484 citations

Xingjie Pan, Won Jung, Aaron R. Halpern, Stephen W. Eichhorn, Zhiyun Lei +7 more

Morphological diversity of single neurons in molecularly defined cell types

Nature(2021)10.1038/s41586-021-03941-1

Top 5%

4.7DataRank

Top 5%433 citations

Peng Xie, Lijuan Liu, Xiuli Kuang, Yimin Wang, Lei Qu +73 more

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.30.015214

Top 5%

4.6DataRank

Top 5%127 citations

Thuc Nghi Nguyen, Cindy T. J. van Velthoven, Jeff Goldy, Adriana E. Sedeño-Cortés, Fahimeh Baftizadeh +30 more

A multimodal cell census and atlas of the mammalian primary motor cortex

Nature(2021)10.1038/s41586-021-03950-0

Top 5%

4.3DataRank

Top 5%574 citations

BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Edward M. Callaway, Joseph R. Ecker, Z. Josh Huang, Ed S. Lein +252 more

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03500-8

Top 5%

4.2DataRank

Top 5%389 citations

Julie A. Harris, Fangming Xie, Stephan Fischer, Ricky S. Adkins, Andrew I. Aldridge +81 more

Cellular anatomy of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03970-w

Top 6%

3.6DataRank

Top 6%288 citations

Brian Zingg, Katherine S. Matho, Xiaoyin Chen, Quanxin Wang, Nicholas N. Foster +78 more

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.31.016972

N/A

2.4DataRank · unranked

90 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +99 more

Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain

Nature(2023)10.1038/s41586-023-06805-y

Top 10%

2.1DataRank

Top 10%132 citations

Qiurui Zeng, Jingtian Zhou, Anna Bartlett, Bang-An Wang, Peter Berube +29 more

A molecularly defined and spatially resolved cell atlas of the whole mouse brain

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.06.531348

Top 10%

2.1DataRank

Top 10%69 citations

Xingjie Pan, Won Jung, Aaron R. Halpern, Stephen W. Eichhorn, Zhiyun Lei +7 more

Dendritic calcium signals in rhesus macaque motor cortex drive an optical brain-computer interface

Nature Communications(2021)10.1038/s41467-021-23884-5

N/A

2.1DataRank · unranked

73 citations

Daniel J. O’Shea, Xulu Sun, James H. Marshel, Ailey Crow, Brian Hsueh +16 more

Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans

eLife(2021)10.7554/elife.64875

N/A

2.0DataRank · unranked

89 citations

Cindy T. J. van Velthoven, Vilas Menon, Rebecca D. Hodge, Zizhen Yao, Thuc Nghi Nguyen +24 more

Single-cell analysis of chromatin accessibility in the adult mouse brain

Nature(2023)10.1038/s41586-023-06824-9

Top 11%

1.9DataRank

Top 11%98 citations

Yang Eric Li, Kangli Wang, Ethan J. Armand, Sainath Mamde, Maria Luisa Amaral +32 more

A whole-brain monosynaptic input connectome to neuron classes in mouse visual cortex

Nature Neuroscience(2022)10.1038/s41593-022-01219-x

Top 12%

1.7DataRank

Top 12%85 citations

Quanxin Wang, Karla E. Hirokawa, Benjamin Ouellette, Ruweida Ahmed, Jasmin Bomben +46 more

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.29.970558

Top 13%

1.6DataRank

Top 13%63 citations

Julie A. Harris, Fangming Xie, Stephan Fischer, A. Sina Booeshaghi, Ricky S. Adkins +78 more

Brain-wide cell-type-specific transcriptomic signatures of healthy ageing in mice

Nature(2025)10.1038/s41586-024-08350-8

Top 14%

1.5DataRank

Top 14%116 citations

Zizhen Yao, Cindy T. J. van Velthoven, Eitan S Kaplan, Katie Glattfelder, Samuel T. Barlow +34 more

Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex

eLife(2023)10.7554/elife.81863

N/A

1.4DataRank · unranked

39 citations

Cristina Radaelli, Elliot R. Thomsen, Deja Monet, Thomas Chartrand, Nikolas L. Jorstad +32 more

Brain-wide correspondence of neuronal epigenomics and distant projections

Nature(2023)10.1038/s41586-023-06823-w

Top 15%

1.4DataRank

Top 15%62 citations

Zhuzhu Zhang, May Wu, Hanqing Liu, Yan Pang, Anna Bartlett +46 more

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

Nature Neuroscience(2009)10.1038/nn.2467

N/A

1.3DataRank · unranked

7297 citations

Theresa A. Zwingman, Carrie McCracken, Seung Wook Oh, Hatim A. Zariwala, Hong Gu +8 more

Cellular Anatomy of the Mouse Primary Motor Cortex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.02.323154

Top 18%

1.2DataRank

Top 18%45 citations

Brian Zingg, Katherine S. Matho, Quanxin Wang, Xiaoyin Chen, Nicholas N. Foster +77 more

A transcriptomic taxonomy of mouse brain-wide spinal projecting neurons

Nature(2023)10.1038/s41586-023-06817-8

Top 18%

1.2DataRank

Top 18%49 citations

Anne Jacobi, Junfeng Su, Leeyup Chung, Cindy T. J. van Velthoven, Zizhen Yao +31 more

Comparative cellular analysis of motor cortex in human, marmoset and mouse

Nature(2021)10.1038/s41586-021-03465-8

N/A

1.0DataRank · unranked

818 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +101 more

BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

Nature Methods(2023)10.1038/s41592-023-01848-5

Top 21%

0.988DataRank

Top 21%55 citations

Zhi Zhou, Hanbo Chen, Arvind Ramanathan, Xiaoxiao Liu, Yufeng Liu +60 more

Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells

Cell(2020)10.1016/j.cell.2020.09.057

N/A

0.950DataRank · unranked

561 citations

Staci A. Sorensen, Fahimeh Baftizadeh, Agata Budzillo, Brian Lee, Tim Jarsky +93 more

A guide to the BRAIN Initiative Cell Census Network data ecosystem

PLoS Biology(2023)10.1371/journal.pbio.3002133

Top 24%

0.845DataRank

Top 24%56 citations

Maryann E. Martone, Giorgio A. Ascoli, Jan G. Bjaalie, Hong‐Wei Dong, Satrajit S. Ghosh +95 more

Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex

Cell Reports(2021)10.1016/j.celrep.2021.108754

N/A

0.793DataRank · unranked

197 citations

Lucas T. Graybuck, Erik E. Hess, Joseph T. Mahoney, Yoshiko Kojima, Yi Ding +37 more

Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex

Science(2023)10.1126/science.adf6484

N/A

0.727DataRank · unranked

126 citations

Rachel Dalley, Jeremy A. Miller, Thomas Chartrand, Jennie Close, Rusty Mann +95 more

Isoform cell-type specificity in the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03969-3

N/A

0.685DataRank · unranked

95 citations

Zizhen Yao, Cindy T. J. van Velthoven, Kimberly A. Smith, Bosiljka Tasic, Hongkui Zeng +2 more

Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex

Science(2023)10.1126/science.adf0805

N/A

0.672DataRank · unranked

87 citations

Rachel Dalley, Jennie Close, Natalia A. Goriounova, Brian Lee, Rusty Mann +85 more

Transcriptional network orchestrating regional patterning of cortical progenitors

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2024795118

N/A

0.606DataRank · unranked

56 citations

Kartik Pattabiraman, Rinaldo Catta-Preta, Olga Golonzhka, Susan Lindtner, Ke Tang +15 more

Toward an integrated classification of neuronal cell types: morphoelectric and transcriptomic characterization of individual GABAergic cortical neurons

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.03.932244

N/A

0.568DataRank · unranked

43 citations

Staci A. Sorensen, Fahimeh Baftizadeh, Agata Budzillo, Brian Lee, Tim Jarsky +92 more

Morpho-electric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.24.511199

N/A

0.540DataRank · unranked

14 citations

Rachel Dalley, Jennie Close, Natalia A. Goriounova, Brian R. Lee, Rusty Mann +83 more

The single-cell opioid responses in the context of HIV (SCORCH) consortium

Molecular Psychiatry(2024)10.1038/s41380-024-02620-7

N/A

0.526DataRank · unranked

16 citations

Rianne R. Campbell, Mary Kay Lobo, Joseph P. Receveur, Kriti Agrawal, Alejandra Borjabad +81 more

Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2108760119

N/A

0.520DataRank · unranked

31 citations

Anna Noren Rubin, Shanni N. Silberberg, Rinaldo Catta-Preta, Kenneth Lim, Athéna R. Ypsilanti +12 more

Neuronal diversity and stereotypy at multiple scales through whole brain morphometry

Nature Communications(2024)10.1038/s41467-024-54745-6

Top 38%

0.508DataRank

Top 38%19 citations

Shengdian Jiang, Yingxin Li, Sujun Zhao, Zhixi Yun, Zuo-Han Zhao +24 more

A whole-brain monosynaptic input connectome to neuron classes in mouse visual cortex

Research Square(2021)10.21203/rs.3.rs-953043/v1

Top 39%

0.491DataRank

Top 39%9 citations

Quanxin Wang, Karla E. Hirokawa, Benjamin Ouellette, Ruweida Ahmed, Jasmin Bomben +46 more

Signature morpho-electric properties of diverse GABAergic interneurons in the human neocortex

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.08.515739

N/A

0.470DataRank · unranked

22 citations

Rachel Dalley, Jeremy A. Miller, Thomas Chartrand, Jennie Close, Rusty Mann +89 more

Enhancer AAVs for targeting spinal motor neurons and descending motor pathways in rodents and macaque

Cell Reports(2025)10.1016/j.celrep.2025.115730

N/A

0.457DataRank · unranked

20 citations

Nelson Johansen, Naz Taskin, Ananya Chowdhury, Meagan A. Quinlan, Alexander Fraser +53 more

Brain-wide single neuron reconstruction reveals morphological diversity in molecularly defined striatal, thalamic, cortical and claustral neuron types

Research Square(2020)10.21203/rs.3.rs-84255/v1

N/A

0.449DataRank · unranked

19 citations

Peng Xie, Lijuan Liu, Xiuli Kuang, Yimin Wang, Lei Qu +72 more

Laminar distribution and arbor density of two functional classes of thalamic inputs to primary visual cortex

Cell Reports(2021)10.1016/j.celrep.2021.109826

N/A

0.406DataRank · unranked

14 citations

Yun Wang, Naveen Ouellette, Emily Turschak, Rylan S. Larsen, Kevin Takasaki +6 more

Regional and cell type-specific afferent and efferent projections of the mouse claustrum

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.23.481555

N/A

0.396DataRank · unranked

13 citations

Yun Wang, Peng Xie, Hsien-Chi Kuo, Karla E. Hirokawa, Maitham Naeemi +16 more

Signature morpho-electric, transcriptomic, and dendritic properties of extratelencephalic-projecting human layer 5 neocortical pyramidal neurons

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.02.365080

N/A

0.364DataRank · unranked

4 citations

Rebecca D. Hodge, Nikolas L. Jorstad, Scott F. Owen, Trygve E. Bakken, Rebecca de Frates +25 more

epDevAtlas: Mapping GABAergic cells and microglia in postnatal mouse brains

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.24.568585

N/A

0.360DataRank · unranked

10 citations

Fae A. Kronman, Jennifer Minteer, Yuan-Ting Wu, Daniel J. Vanselow, Yoav Ben‐Simon +8 more

Consistent cross-modal identification of cortical neurons with coupled autoencoders

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.30.181065

N/A

0.330DataRank · unranked

8 citations

Agata Budzillo, Fahimeh Baftizadeh, Jeremy A. Miller, Nathan W. Gouwens, Anton Arkhipov +6 more

Cross-species consensus atlas of the primate basal ganglia

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.15.694496

Top 52%

0.330DataRank

Top 52%8 citations

Yuanyuan Fu, Matthew T. Schmitz, Alma Dubuc, Niklas Kempynck, Morgan Wirthlin +95 more

Regional, layer, and cell-class specific connectivity of the mouse default mode network

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.13.094458

N/A

0.323DataRank · unranked

7 citations

Adam Liska, Ludovico Coletta, Karla E. Hirokawa, Phillip Bohn, Ali Williford +24 more

Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse

Nature(2022)10.1038/s41586-022-04562-y

N/A

0.317DataRank · unranked

5 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +104 more

The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.26.513573

Top 54%

0.312DataRank

Top 54%7 citations

Maryann E. Martone, Patrick R. Hof, Ed S. Lein, Aviv Regev, Giorgio A. Ascoli +94 more

epDevAtlas: mapping GABAergic cells and microglia in the early postnatal mouse brain

Nature Communications(2025)10.1038/s41467-025-64549-x

N/A

0.292DataRank · unranked

6 citations

Fae N. Kronman, Hyun-Jae Pi, Yuan-Ting Wu, Daniel J. Vanselow, Steffy B. Manjila +10 more

BigNeuron : A resource to benchmark and predict best-performing algorithms for automated reconstruction of neuronal morphology

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.10.491406

Top 57%

0.279DataRank

Top 57%4 citations

Zhi Zhou, Hanbo Chen, Arvind Ramanathan, Xiaoxiao Liu, Yufeng Liu +60 more

Modeling the cell-type-specific mesoscale murine connectome with anterograde tracing experiments

Network Neuroscience(2023)10.1162/netn_a_00337

Top 59%

0.263DataRank

Top 59%4 citations

D. Mastrovito, Jennifer D. Whitesell, Karla E. Hirokawa, Hongkui Zeng, Marina Meilă +3 more

Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.04.369082

N/A

0.241DataRank · unranked

4 citations

Agata Budzillo, Kristen Hadley, Jeremy A. Miller, Tim Jarsky, Katherine Baker +22 more

MorphoHub: A Platform for Petabyte-Scale Multi-Morphometry Generation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.09.426010

N/A

0.241DataRank · unranked

4 citations

Yimin Wang, Lijuan Liu, Sujun Zhao, Mengya Chen, Xuan Zhao +9 more

Neuronal Connectivity as a Determinant of Cell Types and Subtypes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.09.552547

Top 71%

0.124DataRank

Top 71%1 citations

Zhixi Yun, Linus Manubens-Gil, Hanbo Chen, Feng Xiong, Hong‐Wei Dong +5 more

Cholinergic neuronal activity promotes diffuse midline glioma growth through muscarinic signaling

Cell(2025)10.1016/j.cell.2025.05.031

N/A

0DataRank · unranked

41 citations

Antonia Drinnenberg, Avishai Gavish, Belgin Yalçın, Kiarash Shamardani, Abigail Rogers +22 more

Phenotypic variation of transcriptomic cell types in mouse motor cortex

Nature(2020)10.1038/s41586-020-2907-3

N/A

0DataRank · unranked

406 citations

Dmitry Kobak, Matteo Bernabucci, Yves Bernaerts, Cathryn R. Cadwell, Jesus Ramon Castro +12 more

A collection of genetic mouse lines and related tools for inducible and reversible intersectional misexpression

Development(2020)10.1242/dev.186650

N/A

0DataRank · unranked

19 citations

N. Sumru Bayın, Xinli Qu, Aditi Singh, Linda Madisen, Daniel Stephen +4 more

Phenotypic variation within and across transcriptomic cell types in mouse motor cortex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.03.929158

N/A

0DataRank · unranked

48 citations

Dmitry Kobak, Matteo Bernabucci, Yves Bernaerts, Cathryn R. Cadwell, Jesus Ramon Castro +12 more

Isoform cell type specificity in the mouse primary motor cortex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.05.977991

N/A

0DataRank · unranked

6 citations

Zizhen Yao, Cindy T. J. van Velthoven, Kimberly A. Smith, Bosiljka Tasic, Hongkui Zeng +2 more

Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.16.343343

N/A

0DataRank · unranked

5 citations

Cristina Radaelli, Elliot R. Thomsen, Deja Machen, Tom Chartrand, Nikolas L. Jorstad +32 more

Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.03.366914

N/A

0DataRank · unranked

4 citations

Kartik Pattabiraman, Rinaldo Catta-Preta, Olga Golonzhka, Susan Lindtner, Ke Tang +15 more

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

Cell(2021)10.1016/j.cell.2021.04.021

N/A

0DataRank · unranked

1167 citations

Cindy T. J. van Velthoven, Thuc Nghi Nguyen, Jeff Goldy, Adriana E. Sedeño-Cortés, Fahimeh Baftizadeh +34 more

Enhancer viruses for combinatorial cell-subclass-specific labeling

Neuron(2021)10.1016/j.neuron.2021.03.011

N/A

0DataRank · unranked

208 citations

Tanya L. Daigle, Adriana E. Sedeño-Cortés, Miranda Walker, Brian E. Kalmbach, Garreck Lenz +31 more

Relationship between simultaneously recorded spiking activity and fluorescence signal in GCaMP6 transgenic mice

eLife(2021)10.7554/elife.51675

N/A

0DataRank · unranked

176 citations

Peter Ledochowitsch, Ulf Knoblich, Jérôme Lecoq, Gabe J. Murphy, R. Clay Reid +7 more

Signature morpho-electric, transcriptomic, and dendritic properties of human layer 5 neocortical pyramidal neurons

Neuron(2021)10.1016/j.neuron.2021.08.030

N/A

0DataRank · unranked

114 citations

Rebecca D Hodge, Nikolas L. Jorstad, Scott F. Owen, Rebecca de Frates, Anna Marie Yanny +26 more

Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization

eLife(2021)10.7554/elife.65482

N/A

0DataRank · unranked

57 citations

Agata Budzillo, Kristen Hadley, Jeremy A. Miller, Tim Jarsky, Katherine Baker +23 more

Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains

Research Square(2021)10.21203/rs.3.rs-125195/v1

N/A

0DataRank · unranked

11 citations

Yimin Wang, Lijuan Liu, Sujun Zhao, Mengya Chen, Xuan Zhao +9 more

Dense Functional and Molecular Readout of a Circuit Hub in Sensory Cortex

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.23.432355

N/A

0DataRank · unranked

7 citations

Abed Ghanbari, Nikita Manjrekar, Karina Bistrong, Shenqin Yao, Zizhen Yao +5 more

Single Cell Enhancer Activity Maps Neuronal Lineages in Embryonic Mouse Basal Ganglia

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.11.426285

N/A

0DataRank · unranked

2 citations

Anna Noren Rubin, Shanni N. Silberberg, Rinaldo Catta-Preta, Kenneth Lim, Iva Zdilar +11 more

Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.25.465795

N/A

0DataRank · unranked

2 citations

Ethan J. Armand, Zizhen Yao, Hanqing Liu, Anna Bartlett, M. Margarita Behrens +14 more

What is a cell type and how to define it?

Cell(2022)10.1016/j.cell.2022.06.031

N/A

0DataRank · unranked

453 citations

Hongkui Zeng

Make war not love: The neural substrate underlying a state-dependent switch in female social behavior

Neuron(2022)10.1016/j.neuron.2021.12.002

N/A

0DataRank · unranked

124 citations

Dong-Wook Kim, Hongkui Zeng, David J. Anderson, Mengyu Liu

Intersectional mapping of multi-transmitter neurons and other cell types in the brain

Cell Reports(2022)10.1016/j.celrep.2022.111036

N/A

0DataRank · unranked

27 citations

Andrew Jo, Raina P. DeVries, Sercan Deniz, Suraj Cherian, Idris Sunmola +9 more

Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains

Neuroinformatics(2022)10.1007/s12021-022-09569-4

N/A

0DataRank · unranked

25 citations

Yimin Wang, Lijuan Liu, Liya Ding, Zongcai Ruan, Hong‐Wei Dong +5 more

Voltage imaging in the olfactory bulb using transgenic mouse lines expressing the genetically encoded voltage indicator ArcLight

Scientific Reports(2022)10.1038/s41598-021-04482-3

N/A

0DataRank · unranked

22 citations

Hongkui Zeng, Linda Madisen, Lawrence B. Cohen, Vincent A. Pieribone, Douglas A. Storace +1 more

High-throughput analysis of dendritic and axonal arbors reveals transcriptomic correlates of neuroanatomy

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.07.482900

N/A

0DataRank · unranked

3 citations

Matt Mallory, Rachel Dalley, Rohan Gala, James Gornet, Hongkui Zeng +3 more

All-optical physiology resolves a synaptic basis for behavioral timescale plasticity

Cell(2023)10.1016/j.cell.2022.12.035

N/A

0DataRank · unranked

151 citations

Doo Kyung Kim, Joshua H. Jennings, He Tian, Peter Y. Wang, Charu Ramakrishnan +9 more

Neuroscience Needs Network Science

Journal of Neuroscience(2023)10.1523/jneurosci.1014-23.2023

N/A

0DataRank · unranked

94 citations

Ginestra Bianconi, Edward T. Bullmore, Mark Burgess, SueYeon Chung, Tina Eliassi‐Rad +15 more

Regional and cell-type-specific afferent and efferent projections of the mouse claustrum

Cell Reports(2023)10.1016/j.celrep.2023.112118

N/A

0DataRank · unranked

62 citations

Yun Wang, Hsien-Chi Kuo, Peng Xie, Xiuli Kuang, Karla E. Hirokawa +17 more

All-optical recreation of naturalistic neural activity with a multifunctional transgenic reporter mouse

Cell Reports(2023)10.1016/j.celrep.2023.112909

N/A

0DataRank · unranked

26 citations

Masato Sadahiro, William D. Hendricks, Marta Gajowa, Karthika Gopakumar, Daniel Quintana +6 more

Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes

Cell Genomics(2023)10.1016/j.xgen.2023.100342

N/A

0DataRank · unranked

22 citations

Ethan J. Armand, Zizhen Yao, Hanqing Liu, Anna Bartlett, M. Margarita Behrens +14 more

Brain-wide topographic coordination of traveling spiral waves

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.07.570517

N/A

0DataRank · unranked

23 citations

Matthew S. Bull, Anna Li, Daniel Birman, Tanya L. Daigle, Bosiljka Tasic +3 more

Integrating EM and Patch-seq data: Synaptic connectivity and target specificity of predicted Sst transcriptomic types

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.22.533857

N/A

0DataRank · unranked

12 citations

Casey M Schneider-Mizell, Matthew Mallory, Leila Elabbady, Nathan W. Gouwens, G. Williams +45 more

Cell-type specific molecular signatures of aging revealed in a brain-wide transcriptomic cell-type atlas

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.26.550355

N/A

0DataRank · unranked

9 citations

Zizhen Yao, Cindy T. J. van Velthoven, Eitan S Kaplan, Katie Glattfelder, Samuel T. Barlow +34 more

Neuroscience needs Network Science

arXiv (Cornell University)(2023)10.48550/arxiv.2305.06160

N/A

0DataRank · unranked

7 citations

Ginestra Bianconi, Edward T. Bullmore, Mark Burgess, SueYeon Chung, Tina Eliassi‐Rad +15 more

Dissecting The Cellular And Molecular Architecture Of Opioid-Sensitive Neurons Throughout The Brain Using Deep Single-Cell Transcriptomics

Journal of Pain(2023)10.1016/j.jpain.2023.02.202

N/A

0DataRank · unranked

0 citations

Nicole Elise Ochandarena, Hongkui Zeng, Greg Scherrer, Jesse K. Niehaus

Brain-wide Correspondence Between Neuronal Epigenomics and Long-Distance Projections

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.01.538832

N/A

0DataRank · unranked

0 citations

Zhuzhu Zhang, May Wu, Hanqing Liu, Yan Pang, Anna Bartlett +43 more

Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections

Nature Communications(2024)10.1038/s41467-024-47883-4

N/A

0DataRank · unranked

7 citations

Alain Trouvé, Laurent Younès, Michael Kunst, Lydia Ng, Hongkui Zeng +7 more

High-throughput analysis of dendrite and axonal arbors reveals transcriptomic correlates of neuroanatomy

Nature Communications(2024)10.1038/s41467-024-50728-9

N/A

0DataRank · unranked

3 citations

Matt Mallory, Rachel Dalley, Rohan Gala, James Gornet, Hongkui Zeng +3 more

Neocortical long-range inhibition promotes cortical synchrony and sleep

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.20.599756

N/A

0DataRank · unranked

10 citations

Geoffrey Terral, A. Lechuga, Stefano Lutzu, Arena Manning, Nelson Perez Catalan +20 more

Cholinergic Neuronal Activity Promotes Diffuse Midline Glioma Growth through Muscarinic Signaling

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.21.614235

N/A

0DataRank · unranked

7 citations

Antonia Drinnenberg, Avishai Gavish, Belgin Yalçın, Kiarash Shamardani, Abigail Rogers +16 more

Neurogliaform Cells Exhibit Laminar-specific Responses in the Visual Cortex and Modulate Behavioral State-dependent Cortical Activity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.05.597539

N/A

0DataRank · unranked

3 citations

Daniella Rizzo, Sherry Jingjing Wu, Qing Xu, Leena Ziane, Norah Alghamdi +7 more

Neurogliaform Cells Exhibit Laminar-specific Responses in the Visual Cortex and Modulate Behavioral State-dependent Cortical Activity

Research Square(2024)10.21203/rs.3.rs-4530873/v1

N/A

0DataRank · unranked

3 citations

Shuhan Huang, Daniella Rizzo, Sherry Jingjing Wu, Qing Xu, Leena Zaine +7 more

Imaging high-frequency voltage dynamics in multiple neuron classes of behaving mammals

Cell(2025)10.1016/j.cell.2025.06.028

N/A

0DataRank · unranked

14 citations

Radosław Chrapkiewicz, Yanping Zhang, Vasily Kruzhilin, Jane Li, Jizhou Li +10 more

Roadmap for direct and indirect translation of optogenetics into discoveries and therapies for humans

Nature Neuroscience(2025)10.1038/s41593-025-02097-9

N/A

0DataRank · unranked

9 citations

Valentina Emiliani, Nita A. Farahany, Aryn H. Gittis, Viviana Gradinaru, Katherine A. High +6 more

Transcriptional determinants of goal-directed learning and representational drift in the parahippocampal cortex

Cell Reports(2025)10.1016/j.celrep.2024.115175

N/A

0DataRank · unranked

5 citations

David G. Lee, O‐Sung Kwon, Kevin M. Delgado, Nikita Manjrekar, Zizhen Yao +4 more

Data-driven fine-grained region discovery in the mouse brain with transformers

Nature Communications(2025)10.1038/s41467-025-64259-4

N/A

0DataRank · unranked

4 citations

Alma Dubuc, Michael Kunst, Shenqin Yao, Nicholas A. Lusk, Lydia Ng +4 more

Imaging high-frequency voltage dynamics in multiple neuron classes of behaving mammals

Cell(2025)10.1016/j.cell.2025.08.010

N/A

0DataRank · unranked

2 citations

Radosław Chrapkiewicz, Yanping Zhang, Vasily Kruzhilin, Jane Li, Jizhou Li +10 more

Environmental Novelty Modulates Rapid Cortical Plasticity During Navigation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.21.683723

N/A

0DataRank · unranked

2 citations

Antonia Drinnenberg, Can Dong, Charu Ramakrishnan, La’Akea Siverts, Tanya L. Daigle +6 more

Psilocybin triggers an activity-dependent rewiring of large-scale cortical networks

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.06.668927

N/A

0DataRank · unranked

1 citations

Ling-Xiao Shao, Shenqin Yao, Neil K. Savalia, Annie-Kim Gilbert, Pasha A. Davoudian +8 more

Integrated Classification of Cortical Cells and Quantitative Projectomic Mapping Unveil Organizational Principles of Brain-Wide Connectomes at Single Cell Level

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.08.652699

N/A

0DataRank · unranked

0 citations

Hsien-Chi Kuo, Xiuli Kuang, Shenqin Yao, Phil Lesnar, Lydia Ng +40 more

The xIV-LDDMM toolkit of image-varifold based technologies for mapping 3D images and spatial-omics across scales

Communications Biology(2025)10.1038/s42003-025-08800-7

N/A

0DataRank · unranked

0 citations

Xiaoyin Chen, Hongkui Zeng, Benjamin Charlier, Laurent Younès, Alain Trouvé +2 more

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