Marc R. Birtwistle

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.1Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A library of induced pluripotent stem cells from clinically well-characterized, diverse healthy human individuals

Stem Cell Reports(2021)10.1016/j.stemcr.2021.10.005

Top 23%

0.890DataRank

Top 23%30 citations

Priyanka Dhanan, Bin Hu, Arjun S. Yadaw, Teeya Raghunandan, David M. Gonzalez +30 more

Papers

Driven by 44 papers — median percentile 30. Top paper: “A library of induced pluripotent stem cells from clinically well-characterized, diverse healthy human individuals”.

A library of induced pluripotent stem cells from clinically well-characterized, diverse healthy human individuals

Stem Cell Reports(2021)10.1016/j.stemcr.2021.10.005

Top 23%

0.890DataRank

Top 23%30 citations

Priyanka Dhanan, Bin Hu, Arjun S. Yadaw, Teeya Raghunandan, David M. Gonzalez +30 more

A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling

Nature Communications(2022)10.1038/s41467-022-31138-1

N/A

0.658DataRank · unranked

27 citations

Arnab Mutsuddy, Ethan M. Bensman, William B. Dodd, Michael Saint-Antoine, Mehdi Bouhaddou +6 more

Multiscale mapping of transcriptomic signatures for cardiotoxic drugs

Nature Communications(2024)10.1038/s41467-024-52145-4

N/A

0.413DataRank · unranked

11 citations

Yuguang Xiong, Mustafa M. Siddiq, Priyanka Dhanan, Bin Hu, Bhavana Shewale +20 more

Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity: Mount Sinai DToxS LINCS Center Dataset

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.26.966606

Top 70%

0.141DataRank

Top 70%1 citations

Tong Liu, Tong Chen, Jens Hansen, Bin Hu, Yibang Chen +10 more

Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data

Molecular & Cellular Proteomics(2025)10.1016/j.mcpro.2025.100947

Top 78%

0.104DataRank

Top 78%1 citations

Behrouz Shamsaei, Stephan C. Schürer, Phillip Kogan, Szymon Chojnacki, Michal Kouril +69 more

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems

Bioinformatics(2021)10.1093/bioinformatics/btab229

N/A

0DataRank · unranked

13 citations

Tomáš Helikar, Matteo Barberis, Marc R. Birtwistle, Laurence Calzone, Claudine Chaouiya +7 more

Protein structure–based gene expression signatures

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2014866118

N/A

0DataRank · unranked

8 citations

Nicole Zatorski, Jens Hansen, Yuguang Xiong, J. G. Coen van Hasselt, Eric A. Sobie +5 more

Multiscale mapping of transcriptomic signatures for cardiotoxic drugs

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.02.466774

N/A

0DataRank · unranked

2 citations

Yuguang Xiong, Priyanka Dhanan, Bin Hu, Arjun S. Yadaw, Gomathi Jayaraman +17 more

Mesowestern Blot: Simultaneous Analysis of Hundreds of Sub-Microliter Lysates

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.07.467614

N/A

0DataRank · unranked

0 citations

Jonah R. Huggins, Baylee C. Westbury, William R. Interiano, S. Ashley Phillips, Cemal Erdem +5 more

Relating individual cell division events to single-cell ERK and Akt activity time courses

Scientific Reports(2022)10.1038/s41598-022-23071-6

N/A

0DataRank · unranked

20 citations

Gregory R. Smith, LETÍCIA VITÓRIA DA SILVA SANTOS, Deepraj Sarmah, Xiang Zhang, Xiaoming Lu +5 more

Network inference from perturbation time course data

npj Systems Biology and Applications(2022)10.1038/s41540-022-00253-6

N/A

0DataRank · unranked

13 citations

Gregory R. Smith, Mehdi Bouhaddou, Alan D. Stern, James Erskine, Marc R. Birtwistle +1 more

Leveraging modeling and simulation to optimize the therapeutic window for epigenetic modifier drugs

Pharmacology & Therapeutics(2022)10.1016/j.pharmthera.2022.108162

N/A

0DataRank · unranked

7 citations

Arthur J. Van De Vyver, Yu Li, Marc R. Birtwistle, Nevan J. Krogan, Mehdi Bouhaddou +1 more

Mesowestern Blot: Simultaneous Analysis of Hundreds of Submicroliter Lysates

ACS Omega(2022)10.1021/acsomega.2c02201

N/A

0DataRank · unranked

3 citations

Jonah R. Huggins, Deepraj Sarmah, Baylee C. Westbury, William R. Interiano, Micah C. Jordan +7 more

Computational modelling in health and disease: highlights of the 6th annual SysMod meeting

Bioinformatics(2022)10.1093/bioinformatics/btac609

N/A

0DataRank · unranked

3 citations

Juilee Thakar, Matteo Barberis, María Rodríguez Martínez, Tomáš Helikar, Marc R. Birtwistle +4 more

Modeling the Dynamics of Eukaryotic DNA Synthesis in Remembrance of Tunde Ogunnaike

Industrial & Engineering Chemistry Research(2022)10.1021/acs.iecr.2c02856

N/A

0DataRank · unranked

1 citations

Marc R. Birtwistle

Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity

Scientific Data(2022)10.1038/s41597-021-01114-3

N/A

0DataRank · unranked

5 citations

Tong Liu, Tong Chen, Jens Hansen, Bin Hu, Yibang Chen +10 more

Predicting Anti-Cancer Drug Combination Responses with a Temporal Cell State Network Model

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.05.511031

N/A

0DataRank · unranked

3 citations

Wesley O. Meredith, Ian K. Weber, Madison R. Price, Marc R. Birtwistle, Deepraj Sarmah

Multi-Omics Binary Integration via Lasso Ensembles (MOBILE) for identification of context-specific networks and new regulatory mechanisms

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.24.501297

N/A

0DataRank · unranked

2 citations

Sean M. Gross, Laura M. Heiser, Marc R. Birtwistle, Cemal Erdem

A Theory for High-Throughput Genetic Interaction Screening

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.05.510977

N/A

0DataRank · unranked

2 citations

William B. Dodd, Xiaoming Lu, Nishi D. Patel, Charlotte V. Haskell, Hugo Sanabria +3 more

Expanding large-scale mechanistic models with machine learned associations and big datasets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.21.517431

N/A

0DataRank · unranked

0 citations

Marc R. Birtwistle, Cemal Erdem

Predicting individual-specific cardiotoxicity responses induced by tyrosine kinase inhibitors

Frontiers in Pharmacology(2023)10.3389/fphar.2023.1158222

N/A

0DataRank · unranked

14 citations

Arjun S. Yadaw, Priyanka Dhanan, Rafael Dariolli, Evren U. Azeloglu, Bin Hu +7 more

Predicting anti-cancer drug combination responses with a temporal cell state network model

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011082

N/A

0DataRank · unranked

12 citations

Wesley O. Meredith, Ian K. Weber, Madison R. Price, Marc R. Birtwistle, Deepraj Sarmah

MEMMAL: A tool for expanding large-scale mechanistic models with machine learned associations and big datasets

Frontiers in Systems Biology(2023)10.3389/fsysb.2023.1099413

N/A

0DataRank · unranked

10 citations

Marc R. Birtwistle, Cemal Erdem

MOBILE pipeline enables identification of context-specific networks and regulatory mechanisms

Nature Communications(2023)10.1038/s41467-023-39729-2

N/A

0DataRank · unranked

5 citations

Sean M. Gross, Laura M. Heiser, Marc R. Birtwistle, Cemal Erdem

Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format

Bioinformatics Advances(2023)10.1093/bioadv/vbad039

N/A

0DataRank · unranked

2 citations

Cemal Erdem, Jonah R. Huggins, Misha Salim, Daniel Cook, Nicole Hobbs +3 more

Increasing Signal Intensity of Fluorescent Oligo-Labeled Antibodies to Enable Combination Multiplexing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.06.547965

N/A

0DataRank · unranked

0 citations

Xiaoming Lu, Oluwaferanmi Ogunleye, Danielle R. Latham, Megan Abravanel, Daniel J. Pritko +7 more

Low-frequency ERK and Akt activity dynamics are predictive of stochastic cell division events

npj Systems Biology and Applications(2024)10.1038/s41540-024-00389-7

N/A

0DataRank · unranked

9 citations

Alan D. Stern, Xiang Zhang, Marc R. Birtwistle, Gaurav Pandey, Jamie J. R. Bennett

Low-frequency ERK and Akt activity dynamics are predictive of stochastic cell division events

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.17.576041

N/A

0DataRank · unranked

1 citations

Alan D. Stern, Xiang Zhang, Marc R. Birtwistle, Gaurav Pandey, Jamie J. R. Bennett

Genetically-Encoded Fluorescence Barcodes Allow for Single-Cell Analysis via Spectral Flow Cytometry

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.23.619855

N/A

0DataRank · unranked

1 citations

Daniel J. Pritko, Megan Abravanel, Jonah R. Huggins, Feranmi Ogunleye, Tirthankar Biswas +6 more

Network Analyses of Brain Tumor Patients’ Multiomic Data Reveals Pharmacological Opportunities to Alter Cell State Transitions

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.08.593202

N/A

0DataRank · unranked

0 citations

Marc R. Birtwistle, James M. Gallo, Brandon Bumbaca

Network Analyses of Brain Tumor Patients’ Multiomic Data Reveals Pharmacological Opportunities to Alter Cell State Transitions

Research Square(2024)10.21203/rs.3.rs-4391296/v1

N/A

0DataRank · unranked

0 citations

Marc R. Birtwistle, James M. Gallo, Brandon Bumbaca

Mechanistic modeling of cell viability assays with in silico lineage tracing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.23.609433

N/A

0DataRank · unranked

0 citations

Jonah R. Huggins, Aurore K. Amrit, Cemal Erdem, Jon C. Calhoun, Marc R. Birtwistle +1 more

Purifying circular RNA by ultrafiltration

Separation and Purification Technology(2025)10.1016/j.seppur.2025.132809

N/A

0DataRank · unranked

8 citations

Xiaoming Lu, Marc R. Birtwistle, Scott M. Husson, Karen Guillen-Cuevas

Genetically Encoded Fluorescence Barcodes Allow for Single-Cell Analysis via Spectral Flow Cytometry

ACS Synthetic Biology(2025)10.1021/acssynbio.4c00807

N/A

0DataRank · unranked

3 citations

Daniel J. Pritko, Megan Abravanel, Jonah R. Huggins, Oluwaferanmi Ogunleye, Tirthankar Biswas +6 more

Techno‐economic analysis of membrane‐based continuous capture chromatography platforms for large‐scale antibody production

Biotechnology Progress(2025)10.1002/btpr.70033

N/A

0DataRank · unranked

1 citations

Eleanor W. Jenkins, Marc R. Birtwistle, Scott M. Husson, Juan J. Romero

Network analyses of brain tumor multiomic data reveal pharmacological opportunities to alter cell state transitions

npj Systems Biology and Applications(2025)10.1038/s41540-025-00493-2

N/A

0DataRank · unranked

1 citations

Jonah R. Huggins, Marc R. Birtwistle, James M. Gallo, Brandon Bumbaca

Low-Frame-Rate Cell Tracking: Unmet Needs and Future Directions

(2025)10.1109/cvprw67362.2025.00459

N/A

0DataRank · unranked

1 citations

Akhila Nangineedi, Mahsa Partovi, Fardifa Fathmiul Alam, Tzu-Yu Chu, James Schvaneveldt +5 more

Corrigendum to “Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data”

Molecular & Cellular Proteomics(2025)10.1016/j.mcpro.2025.100995

N/A

0DataRank · unranked

0 citations

Behrouz Shamsaei, Stephan C. Schürer, Phillip Kogan, Szymon Chojnacki, Michal Kouril +68 more

Transcriptomic profiling of human cardiac cells predicts protein kinase inhibitor-associated cardiotoxicity

Nature Communications(2020)10.1038/s41467-020-18396-7

N/A

0DataRank · unranked

51 citations

Rayees Rahman, Jens Hansen, Alan D. Stern, Jaehee V. Shim, Arjun S. Yadaw +12 more

Mechanistic modeling of cell viability assays with in silico lineage tracing

PLoS Computational Biology(2025)10.1371/journal.pcbi.1013156

N/A

0DataRank · unranked

0 citations

Jonah R. Huggins, Aurore K. Amrit, Atalanta Manuela Harley-Gasaway, Cemal Erdem, Evan T. Jones +4 more

Fluorescent Antibody Multiplexing with Oligo-Based Combinatorial Labeling

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.06.371906

N/A

0DataRank · unranked

0 citations

Caitlin M. Anglin, Heather A. Peer, Sevanna A. Boleman, Stephanie R. Klaubert, Marc R. Birtwistle +1 more

A Scalable, Open-Source Implementation of a Large-Scale Mechanistic Model for Single Cell Proliferation and Death Signaling

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.09.373407

N/A

0DataRank · unranked

0 citations

Arnab Mutsuddy, Ethan M. Bensman, William B. Dodd, Michael Saint-Antoine, Mehdi Bouhaddou +6 more

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems

INRIA a CCSD electronic archive server(2020)10.5281/zenodo.4245269

N/A

0DataRank · unranked

0 citations

Tomáš Helikar, Matteo Barberis, Marc R. Birtwistle, Laurence Calzone, Claudine Chaouiya +7 more

Anti-invasive efficacy and survival benefit of the YAP-TEAD inhibitor verteporfin in preclinical glioblastoma models

Neuro-Oncology(2021)10.1093/neuonc/noab244

N/A

0DataRank · unranked

136 citations

Halle Ronk, Tanvi Joshi, Zarmeen Mussa, Meenakshi Mehrotra, Alexandros Bouras +11 more

Marc R. Birtwistle

Indexed papers

Top data-sharing exemplar

Papers