Manu Setty

Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa

Also affiliated with Memorial Sloan Kettering Cancer Center, Fred Hutch Cancer Center

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

27.2Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 23 papers — median percentile 98. Top paper: “Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project”.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Regenerative lineages and immune-mediated pruning in lung cancer metastasis

Nature Medicine(2020)10.1038/s41591-019-0750-6

N/A

9.1DataRank · unranked

504 citations

Jing Hu, Nathaniel R. Campbell, Samuel F. Bakhoum, Manu Setty, Vincent‐Philippe Lavallée +14 more

A comparative encyclopedia of DNA elements in the mouse genome

Nature(2014)10.1038/nature13992

Top 2%

7.9DataRank

Top 2%1946 citations

Yong Cheng, Alessandra Breschi, Jost Vielmetter, Weisheng Wu, Tyrone Ryba +150 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Single-Cell Transcriptomics Reveals Early Emergence of Liver Parenchymal and Non-parenchymal Cell Lineages

Cell(2020)10.1016/j.cell.2020.09.012

N/A

2.7DataRank · unranked

96 citations

Sibyl Drissler, Rebecca Cullum, Wei Wei, Manu Setty, Erin M. Bell +9 more

CellRank for directed single-cell fate mapping

Research Square(2020)10.21203/rs.3.rs-94819/v1

N/A

1.6DataRank · unranked

35 citations

Volker Bergen, Michal Klein, Manu Setty, Bernhard Reuter, Mostafa Bakhti +7 more

CUT&Tag2for1: a modified method for simultaneous profiling of the accessible and silenced regulome in single cells

Genome biology(2022)10.1186/s13059-022-02642-w

N/A

1.5DataRank · unranked

64 citations

Dominik J. Otto, Michael P. Meers, Manu Setty, Kami Ahmad, Steven Henikoff +1 more

The accessible chromatin landscape of the human genome

Nature(2012)10.1038/nature11232

N/A

1.2DataRank · unranked

2882 citations

Eric Rynes, Richard Humbert, Jost Vielmetter, Matthew T. Maurano, Eric Haugen +57 more

Defining cellular population dynamics at single-cell resolution during prostate cancer progression

eLife(2022)10.7554/elife.79076

N/A

1.1DataRank · unranked

29 citations

Sonali Arora, Ye Zheng, Erica T. Goddard, Ilsa M. Coleman, Anson T. Ku +17 more

Age-related epithelial defects limit thymic function and regeneration

Nature Immunology(2024)10.1038/s41590-024-01915-9

N/A

0.661DataRank · unranked

81 citations

Lorenz Jahn, Kelin Zhao, Angel E. Flores, Dante Acenas, Emma Lederer +33 more

CellRank for directed single-cell fate mapping

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.19.345983

N/A

0.593DataRank · unranked

51 citations

Volker Bergen, Michal Klein, Manu Setty, Bernhard Reuter, Mostafa Bakhti +7 more

Patterns of intra- and intertumor phenotypic heterogeneity in lethal prostate cancer

Journal of Clinical Investigation(2025)10.1172/jci186599

N/A

0.360DataRank · unranked

10 citations

Roman Gulati, Erolcan Sayar, Radhika A. Patel, Micah Tratt, Helen Richards +40 more

Single-cell analysis of bidirectional reprogramming between early embryonic states identify mechanisms of differential lineage plasticities in mice

Developmental Cell(2024)10.1016/j.devcel.2024.11.022

N/A

0.174DataRank · unranked

2 citations

Yang Yang, Sonja Nowotschin, Manu Setty, Eralda Salataj, Ying-Yi Kuo +8 more

Molecular heterogeneity of C. elegans glia across sexes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.21.533668

N/A

0DataRank · unranked

13 citations

Elgene J. A. Quitevis, R. Sean Manning, Liza J. Severs, Nina Tuyen Tran, Violet Sorrentino +3 more

Single-cell analysis of bidirectional reprogramming between early embryonic states reveals mechanisms of differential lineage plasticities

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.28.534648

N/A

0DataRank · unranked

7 citations

Yang Yang, Sonja Nowotschin, Manu Setty, Ying-Yi Kuo, Roshan Sharma +8 more

Quantifying Cell-State Densities in Single-Cell Phenotypic Landscapes using Mellon

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.09.548272

N/A

0DataRank · unranked

7 citations

C. Diana Jordan, Brennan Dury, Christine Dien, Manu Setty, Dominik J. Otto

Quantifying cell-state densities in single-cell phenotypic landscapes using Mellon

Nature Methods(2024)10.1038/s41592-024-02302-w

N/A

0DataRank · unranked

36 citations

C. Diana Jordan, Brennan Dury, Christine Dien, Manu Setty, Dominik J. Otto

Signals that control MAIT cell function in healthy and inflamed human tissues

Immunological Reviews(2024)10.1111/imr.13325

N/A

0DataRank · unranked

7 citations

Yin Huang, Manu Setty, Martin Prlic, A Konecny

Molecular profiling of adult C. elegans glia across sexes by single-nuclear RNA-seq

Developmental Cell(2025)10.1016/j.devcel.2025.05.013

N/A

0DataRank · unranked

9 citations

Elgene J. A. Quitevis, R. Sean Manning, Liza J. Severs, Natalie Tran, Violet Sorrentino +6 more

Comparing phenotypic manifolds with Kompot: Detecting differential abundance and gene expression at single-cell resolution

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.03.657769

N/A

0DataRank · unranked

0 citations

Erica Arriaga-Gomez, Elana Thieme, Ruijin Yang, Stanley Chun-Wei Lee, Manu Setty +1 more

Defining cellular population dynamics at single cell resolution during prostate cancer progression

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.02.482711

N/A

0DataRank · unranked

2 citations

Sonali Arora, Ye Zheng, Erica T. Goddard, Ilsa M. Coleman, Anson T. Ku +13 more

Simultaneous CUT&Tag profiling of the accessible and silenced regulome in single cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.19.473377

N/A

0DataRank · unranked

1 citations

Dominik J. Otto, Michael P. Meers, Manu Setty, Kami Ahmad, Steven Henikoff +1 more

DUX4 expression in cancer induces a metastable early embryonic totipotent program

Cell Reports(2023)10.1016/j.celrep.2023.113114

N/A

0DataRank · unranked

22 citations

Yee Nip, Sean Bennett, Danielle C. Hamm, Richard J.L.F. Lemmers, Patrick J. van der Vliet +4 more

Manu Setty

Indexed papers

Top data-sharing exemplar

Papers