🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Philipp Angerer

Somerville Hospital

ORCID: 0000-0002-0369-2888
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
8.7Author DataRank

Indexed papers

6in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8
Top 4%
5.4DataRank
Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

Papers

Driven by 15 papers — median percentile 17. Top paper: “The scverse project provides a computational ecosystem for single-cell omics data analysis”.

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8
Top 4%
5.4DataRank
Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

anndata: Access and store annotated data matrices

Journal of Open Source Software(2024)10.21105/joss.04371
Top 7%
3.1DataRank
Top 7%203 citations

Sergei Rybakov, Fabian Joachim Theis, Philipp Angerer, Francesca Finotello, Valeh Valiollah Pour Amiri

Scanpy for analysis of large-scale single-cell gene expression data

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/174029
N/A
1.4DataRank · unranked
21 citations

Philipp Angerer, Fabian Joachim Theis, Francesca Finotello

BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Genome Biology(2019)10.1186/s13059-019-1748-6
N/A
1.3DataRank · unranked
28 citations

Florian Opperer, Can Sönmezer, Dmitry Shaposhnikov, Steffen Sass, Christian Krendl +5 more

destiny : diffusion maps for large-scale single-cell data in R

Bioinformatics(2015)10.1093/bioinformatics/btv715
N/A
0.981DataRank · unranked
689 citations

Laleh Haghverdi, Maren Büttner, Fabian Joachim Theis, Carsten Marr, Florian Buettner +1 more

anndata: Annotated data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.16.473007
N/A
0.859DataRank · unranked
306 citations

Sergei Rybakov, Fabian Joachim Theis, Philipp Angerer, Francesca Finotello, Valeh Valiollah Pour Amiri

Single cells make big data: New challenges and opportunities in transcriptomics

Current Opinion in Systems Biology(2017)10.1016/j.coisb.2017.07.004
N/A
0.833DataRank · unranked
257 citations

Sophie Tritschler, Francesca Finotello, Fabian Joachim Theis, Lukas M. Simon, Florian Wolf +2 more

Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data

Bioinformatics(2020)10.1093/bioinformatics/btaa198
N/A
0.667DataRank · unranked
14 citations

David S. Fischer, Fabian Joachim Theis, Antonio Scialdone, Carsten Marr, Philipp Angerer

FASTGenomics: An analytical ecosystem for single-cell RNA sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/272476
N/A
0.483DataRank · unranked
12 citations

Paweł Biernat, Matthias Becker, Kevin Baßler, Patrick Günther, Jenny Balfer +21 more

destiny – diffusion maps for large-scale single-cell data in R

bioRxiv (Cold Spring Harbor Laboratory)(2015)10.1101/023309
N/A
0.360DataRank · unranked
10 citations

Laleh Haghverdi, Maren Büttner, Fabian Joachim Theis, Carsten Marr, Florian Buettner +1 more

MetaMap, an interactive webtool for the exploration of metatranscriptomic reads in human disease-related RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/425439
Top 66%
0.188DataRank
Top 66%1 citations

Fabian Joachim Theis, George Tsitsiridis, Philipp Angerer, Lukas M. Simon

Automatic identification of relevant genes from low-dimensional embeddings of single cell RNAseq data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.21.000398
N/A
0.104DataRank · unranked
1 citations

David S. Fischer, Fabian Joachim Theis, Antonio Scialdone, Carsten Marr, Philipp Angerer

Additional file 1: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Figshare(2019)10.6084/m9.figshare.9277580
Top 100%
0DataRank
Top 100%0 citations

Florian Opperer, Can Sรถnmezer, Dmitry Shaposhnikov, Steffen Sass, Christian Krendl +5 more

Additional file 4: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Figshare(2019)10.6084/m9.figshare.9277595
Top 100%
0DataRank
Top 100%0 citations

Florian Opperer, Can Sรถnmezer, Dmitry Shaposhnikov, Steffen Sass, Christian Krendl +5 more

Additional file 5: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Figshare(2019)10.6084/m9.figshare.9277604
Top 100%
0DataRank
Top 100%0 citations

Florian Opperer, Can Sรถnmezer, Dmitry Shaposhnikov, Steffen Sass, Christian Krendl +5 more