Daniel A. Polasky

ChemistryBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 21 papers. Top paper: “Comprehensive proteogenomic characterization of rare kidney tumors”.

Comprehensive proteogenomic characterization of rare kidney tumors

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101547

N/A

0.920DataRank · unranked

46 citations

Lijun Chen, Yi Hsiao, Rahul Mannan, Yuping Zhang, Jie Luo +95 more

Unraveling the glycosylated immunopeptidome with HLA-Glyco

Nature Communications(2023)10.1038/s41467-023-39270-2

N/A

0.385DataRank · unranked

12 citations

Daniel A. Polasky, Yi Hsiao, Fengchao Yu, Felipe da Veiga Leprevost, Javier A. Alfaro +3 more

Fast quantitative analysis of timsTOF PASEF data with MSFragger and IonQuant

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.19.999334

N/A

0DataRank · unranked

28 citations

Sarah E. Haynes, Guo Ci Teo, Dmitry M. Avtonomov, Daniel A. Polasky, Alexey I. Nesvizhskii +1 more

Fast and Comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.18.102665

N/A

0DataRank · unranked

23 citations

Fengchao Yu, Guo Ci Teo, Alexey I. Nesvizhskii, Daniel A. Polasky

Multiattribute Glycan Identification and FDR Control for Glycoproteomics

Molecular & Cellular Proteomics(2022)10.1016/j.mcpro.2022.100205

N/A

0DataRank · unranked

52 citations

Daniel Geiszler, Fengchao Yu, Alexey I. Nesvizhskii, Daniel A. Polasky

Recent advances in computational algorithms and software for large-scale glycoproteomics

Current Opinion in Chemical Biology(2022)10.1016/j.cbpa.2022.102238

N/A

0DataRank · unranked

43 citations

Alexey I. Nesvizhskii, Daniel A. Polasky

Mining for ions: diagnostic feature detection in MS/MS spectra of post-translationally modified peptides

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.12.507594

N/A

0DataRank · unranked

8 citations

Daniel A. Polasky, Fengchao Yu, Alexey I. Nesvizhskii, Daniel Geiszler

MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.12.511963

N/A

0DataRank · unranked

4 citations

Daniel Geiszler, Fengchao Yu, Kai Li, Guo Ci Teo, Alexey I. Nesvizhskii +1 more

HLA-Glyco: A large-scale interrogation of the glycosylated immunopeptidome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.05.519200

N/A

0DataRank · unranked

1 citations

Daniel A. Polasky, Yi Hsiao, Fengchao Yu, Felipe da Veiga Leprevost, Javier A. Alfaro +3 more

MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100538

N/A

0DataRank · unranked

44 citations

Daniel Geiszler, Fengchao Yu, Kai Li, Guo Ci Teo, Alexey I. Nesvizhskii +1 more

Detecting diagnostic features in MS/MS spectra of post-translationally modified peptides

Nature Communications(2023)10.1038/s41467-023-39828-0

N/A

0DataRank · unranked

38 citations

Daniel A. Polasky, Fengchao Yu, Alexey I. Nesvizhskii, Daniel Geiszler

Solid-Phase Compatible Silane-Based Cleavable Linker Enables Custom Isobaric Quantitative Chemoproteomics

Journal of the American Chemical Society(2023)10.1021/jacs.3c05797

N/A

0DataRank · unranked

21 citations

Daniel A. Polasky, Flowreen Shikwana, Samuel Ofori, Tianyang Yan, Daniel Geiszler +4 more

A solid-phase compatible silane-based cleavable linker enables custom isobaric quantitative chemoproteomics

ChemRxiv(2023)10.26434/chemrxiv-2023-n8h29

N/A

0DataRank · unranked

2 citations

Daniel A. Polasky, Flowreen Shikwanna, Samuel Ofori, Tianyang Yan, Daniel Geiszler +4 more

Efficient Analysis of Proteome-wide FPOP Data by FragPipe

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.01.543263

N/A

0DataRank · unranked

2 citations

Jessica A. Espino, Lisa M. Jones, Daniel A. Polasky, Alexey I. Nesvizhskii, Carolina Rojas Ramírez

A solid-phase compatible silane-based cleavable linker enables custom isobaric quantitative chemoproteomics

ChemRxiv(2023)10.26434/chemrxiv-2023-n8h29-v2

N/A

0DataRank · unranked

0 citations

Daniel A. Polasky, Flowreen Shikwanna, Samuel Ofori, Tianyang Yan, Daniel Geiszler +4 more

Enhancing multiplexed cysteine chemoproteomics by uniting FragPipe with solid-phase compatible dialkoxydiphenylsilane reagents

ChemRxiv(2023)10.26434/chemrxiv-2023-n8h29-v3

N/A

0DataRank · unranked

0 citations

Daniel A. Polasky, Flowreen Shikwanna, Samuel Ofori, Tianyang Yan, Daniel Geiszler +4 more

Quantitative proteome-wide O-glycoproteomics analysis with FragPipe

Analytical and Bioanalytical Chemistry(2024)10.1007/s00216-024-05382-x

N/A

0DataRank · unranked

11 citations

Lei Lü, Fengchao Yu, Kai Li, Michael R. Shortreed, Lloyd M. Smith +2 more

Breaking Boundaries in Histone Modification MS-Based Detection: A Tailored Search Strategy for Unrestricted Identification of Novel Epigenetic Marks

Molecular & Cellular Proteomics(2025)10.1016/j.mcpro.2025.101080

N/A

0DataRank · unranked

3 citations

Roberta Noberini, Andrea Graziadei, Daniel A. Polasky, Fengchao Yu, Alexey I. Nesvizhskii +2 more

Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant

Molecular & Cellular Proteomics(2020)10.1074/mcp.tir120.002048

N/A

0DataRank · unranked

400 citations

Sarah E. Haynes, Guo Ci Teo, Dmitry M. Avtonomov, Daniel A. Polasky, Alexey I. Nesvizhskii +1 more

A New Detailed Mass Offset Search in MSFragger for Improved Interpretation of Complex PTMs

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.28.667198

N/A

0DataRank · unranked

1 citations

Fengchao Yu, Daniel A. Polasky, Alexey I. Nesvizhskii, Carolina Rojas Ramírez

Pervasive Charge Solvation Permeates Native-like Protein Ions and Dramatically Influences Top-down Sequencing Data

Journal of the American Chemical Society(2020)10.1021/jacs.0c01076

N/A

0DataRank · unranked

20 citations

Sugyan M. Dixit, Michael F. Keating, Varun V. Gadkari, Philip Andrews, Brandon T. Ruotolo +1 more