Allen Tannenbaum

Also affiliated with Stony Brook University

Computer ScienceEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.1Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification of biological correlates associated with respiratory failure in COVID-19

BMC Medical Genomics(2020)10.1186/s12920-020-00839-1

Top 28%

0.715DataRank

Top 28%13 citations

Allen Tannenbaum, Joseph O. Deasy, Jung Hun Oh

Papers

Driven by 50 papers — median percentile 63. Top paper: “The choroid plexus links innate immunity to CSF dysregulation in hydrocephalus”.

The choroid plexus links innate immunity to CSF dysregulation in hydrocephalus

Cell(2023)10.1016/j.cell.2023.01.017

N/A

2.7DataRank · unranked

145 citations

Benjamin C. Reeves, Emre Kiziltug, Phan Q. Duy, Jason K. Karimy, M. Shahid Mansuri +32 more

Identification of biological correlates associated with respiratory failure in COVID-19

BMC Medical Genomics(2020)10.1186/s12920-020-00839-1

Top 28%

0.715DataRank

Top 28%13 citations

Allen Tannenbaum, Joseph O. Deasy, Jung Hun Oh

Changes in the geometry and robustness of diffusion tensor imaging networks: Secondary analysis from a randomized controlled trial of young autistic children receiving an umbilical cord blood infusion

Frontiers in Psychiatry(2022)10.3389/fpsyt.2022.1026279

N/A

0.434DataRank · unranked

11 citations

Kimberly L. H. Carpenter, Joanne Kurtzberg, Allen W. Song, Allen Tannenbaum, Lijia Zhang +3 more

Identification of biological correlates associated with respiratory failure in COVID-19

medRxiv(2020)10.1101/2020.09.29.20204289

Top 47%

0.389DataRank

Top 47%5 citations

Allen Tannenbaum, Joseph O. Deasy, Jung Hun Oh

aWCluster: A Novel Integrative Network-Based Clustering of Multiomics for Subtype Analysis of Cancer Data

IEEE/ACM Transactions on Computational Biology and Bioinformatics(2020)10.1109/tcbb.2020.3039511

N/A

0DataRank · unranked

27 citations

Jung Hun Oh, Pedram Javanmard, James C. Mathews, Zehor Belkhatir, Joseph O. Deasy +2 more

A novel kernel Wasserstein distance on Gaussian measures: An application of identifying dental artifacts in head and neck computed tomography

Computers in Biology and Medicine(2020)10.1016/j.compbiomed.2020.103731

N/A

0DataRank · unranked

23 citations

Maryam Pouryahya, Aditi Iyer, Aditya Apte, Joseph O. Deasy, Allen Tannenbaum +1 more

Stochastic Norton–Simon–Massagué Tumor Growth Modeling: Controlled and Mixed-Effect Uncontrolled Analysis

IEEE Transactions on Control Systems Technology(2020)10.1109/tcst.2020.2975141

N/A

0DataRank · unranked

3 citations

Michele Pavon, James C. Mathews, Maryam Pouryahya, Joseph O. Deasy, Larry Norton +2 more

A Vectorial Approach to Unbalanced Optimal Mass Transport

IEEE Access(2020)10.1109/access.2020.3038567

N/A

0DataRank · unranked

2 citations

Rena Elkin, Jung Hun Oh, Joseph O. Deasy, Allen Tannenbaum, Jiening Zhu

Supervised Image Classification Algorithm Using Representative Spatial Texture Features: Application to COVID-19 Diagnosis Using CT Images

medRxiv(2020)10.1101/2020.12.03.20243493

N/A

0DataRank · unranked

2 citations

Raúl San Jośe Estépar, Allen Tannenbaum, Zehor Belkhatir

Near-tubular fiber bundle segmentation for diffusion weighted imaging: Segmentation through frame reorientation

UNC Libraries(2020)10.17615/zyw7-x927

N/A

0DataRank · unranked

0 citations

Marc Niethammer, John Melonakos, Allen Tannenbaum, Christopher Zach

PathCNN: interpretable convolutional neural networks for survival prediction and pathway analysis applied to glioblastoma

Bioinformatics(2021)10.1093/bioinformatics/btab285

N/A

0DataRank · unranked

66 citations

Wookjin Choi, Euiseong Ko, Mingon Kang, Allen Tannenbaum, Joseph O. Deasy +1 more

Geometric network analysis provides prognostic information in patients with high grade serous carcinoma of the ovary treated with immune checkpoint inhibitors

npj Genomic Medicine(2021)10.1038/s41525-021-00259-9

N/A

0DataRank · unranked

28 citations

Jung Hun Oh, Ying L. Liu, Pier Selenica, Britta Weigelt, Jorge S. Reis‐Filho +6 more

Reproducibility of radiomic features using network analysis and its application in Wasserstein k-means clustering

Journal of Medical Imaging(2021)10.1117/1.jmi.8.3.031904

N/A

0DataRank · unranked

6 citations

Aditya Apte, Evangelia Katsoulakis, Nadeem Riaz, Vaios Hatzoglou, Yao Yu +9 more

Volume Exploration Using Multidimensional Bhattacharyya Flow

IEEE Transactions on Visualization and Computer Graphics(2021)10.1109/tvcg.2021.3127918

N/A

0DataRank · unranked

1 citations

Mahsa Torkaman, Allen Tannenbaum, Saad Nadeem, Arie Kaufman, Shreeraj Jadhav

vWCluster: A Network Based Clustering of Multi-omics Breast Cancer Data Based on Vector-Valued Optimal Transport

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.17.448878

N/A

0DataRank · unranked

3 citations

Jung Hun Oh, Joseph O. Deasy, Allen Tannenbaum, Jiening Zhu

Geometric Network Analysis Provides Prognostic Information in Patients with High Grade Serous Carcinoma of the Ovary Treated with Immune Checkpoint Inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.10.447889

N/A

0DataRank · unranked

2 citations

Jung Hun Oh, Ying L. Liu, Pier Selenica, Britta Weigelt, Jorge S. Reis‐Filho +6 more

Long-term p21 and p53 trends regulate the frequency of mitosis events and cell cycle arrest

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.17.456721

N/A

0DataRank · unranked

0 citations

Christopher J. Tralie, Caroline Moosmüller, Zehor Belkhatir, José Reyes, Arnold J. Levine +3 more

The glymphatic system: Current understanding and modeling

iScience(2022)10.1016/j.isci.2022.104987

N/A

0DataRank · unranked

366 citations

Poul G. Hjorth, Sebastian C. Holst, Sabina Hrabětová, Vesa Kiviniemi, Tuomas O. Lilius +14 more

Physiology of Glymphatic Solute Transport and Waste Clearance from the Brain

Physiology(2022)10.1152/physiol.00015.2022

N/A

0DataRank · unranked

52 citations

Allen Tannenbaum, Erik N.T.P. Bakker, Helene Benveniste, Lucy Zhao

Pan-Cancer Prediction of Cell-Line Drug Sensitivity Using Network-Based Methods

International Journal of Molecular Sciences(2022)10.3390/ijms23031074

N/A

0DataRank · unranked

20 citations

Jung Hun Oh, James C. Mathews, Zehor Belkhatir, Caroline Moosmüller, Joseph O. Deasy +2 more

Long-term p21 and p53 dynamics regulate the frequency of mitosis events and cell cycle arrest following radiation damage

Cell Death and Differentiation(2022)10.1038/s41418-022-01069-x

N/A

0DataRank · unranked

20 citations

Christopher J. Tralie, José Reyes, Caroline Moosmüller, Zehor Belkhatir, Ioannis G. Kevrekidis +4 more

vWCluster: Vector-valued optimal transport for network based clustering using multi-omics data in breast cancer

PLoS ONE(2022)10.1371/journal.pone.0265150

N/A

0DataRank · unranked

9 citations

Jung Hun Oh, Joseph O. Deasy, Allen Tannenbaum, Jiening Zhu

The maximum entropy principle for compositional data

BMC Bioinformatics(2022)10.1186/s12859-022-05007-z

N/A

0DataRank · unranked

8 citations

Jiening Zhu, Joseph O. Deasy, Allen Tannenbaum, Corey Weistuch

Wasserstein-based texture analysis in radiomic studies

Computerized Medical Imaging and Graphics(2022)10.1016/j.compmedimag.2022.102129

N/A

0DataRank · unranked

4 citations

Raúl San Jośe Estépar, Allen Tannenbaum, Zehor Belkhatir

Multi-omic integrated curvature study on pan-cancer genomic data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.24.485712

N/A

0DataRank · unranked

2 citations

Anh Phong Tran, Joseph O. Deasy, Allen Tannenbaum, Jiening Zhu

The Maximum Entropy Principle For Compositional Data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.07.495074

N/A

0DataRank · unranked

1 citations

Jiening Zhu, Joseph O. Deasy, Allen Tannenbaum, Corey Weistuch

Dynamic Network Curvature Analysis of RNA-Seq Data in Sarcoma

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.09.483487

N/A

0DataRank · unranked

0 citations

Jung Hun Oh, Filemon S. Dela Cruz, Joseph O. Deasy, Andrew L. Kung, Allen Tannenbaum +1 more

Dynamic Network Curvature Analysis of Gene Expression Reveals Novel Potential Therapeutic Targets in Sarcoma

Research Square(2022)10.21203/rs.3.rs-1898863/v1

N/A

0DataRank · unranked

0 citations

Rena Elkin, Jung Hun Oh, Filemon S. Dela Cruz, Larry Norton, Joseph O. Deasy +2 more

Continuous positive airway pressure increases CSF flow and glymphatic transport

JCI Insight(2023)10.1172/jci.insight.170270

N/A

0DataRank · unranked

44 citations

Sunil Koundal, Ehab Al Bizri, Xinan Chen, Zachary H. Gursky, Dai Feng +7 more

Geometric graph neural networks on multi-omics data to predict cancer survival outcomes

Computers in Biology and Medicine(2023)10.1016/j.compbiomed.2023.107117

N/A

0DataRank · unranked

40 citations

Jung Hun Oh, Anish K. Simhal, Rena Elkin, Larry Norton, Joseph O. Deasy +2 more

Predicting the germline dependence of hematuria risk in prostate cancer radiotherapy patients

Radiotherapy and Oncology(2023)10.1016/j.radonc.2023.109723

N/A

0DataRank · unranked

9 citations

Sangkyu Lee, Maria Thor, Barry S. Rosenstein, Allen Tannenbaum, Sarah L. Kerns +2 more

Visualizing Fluid Flows via Regularized Optimal Mass Transport with Applications to Neuroscience

Journal of Scientific Computing(2023)10.1007/s10915-023-02337-9

N/A

0DataRank · unranked

9 citations

Anh Phong Tran, Rena Elkin, Helene Benveniste, Allen Tannenbaum, Xinan Chen

Improved prediction of drug-induced liver injury literature using natural language processing and machine learning methods

Frontiers in Genetics(2023)10.3389/fgene.2023.1161047

N/A

0DataRank · unranked

4 citations

Allen Tannenbaum, Joseph O. Deasy, Jung Hun Oh

Functional transcriptional signatures for tumor-type-agnostic phenotype prediction

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.12.536595

N/A

0DataRank · unranked

6 citations

Kevin A. Murgas, Jiening Zhu, Larry Norton, Ken A. Dill, Allen Tannenbaum +2 more

Dynamic Network Curvature Analysis of Gene Expression Reveals Novel Potential Therapeutic Targets in Sarcoma

Research Square(2023)10.21203/rs.3.rs-1898863/v2

N/A

0DataRank · unranked

3 citations

Jung Hun Oh, Filemon S. Dela Cruz, Larry Norton, Joseph O. Deasy, Andrew L. Kung +2 more

Unbalanced Regularized Optimal Mass Transport with Applications to Fluid Flows in the Brain

arXiv (Cornell University)(2023)10.48550/arxiv.2301.11228

N/A

0DataRank · unranked

1 citations

Helene Benveniste, Allen Tannenbaum, Xinan Chen

Tumor immune infiltrates and overall survival in non-small cell lung cancer are associated with an unsupervised radiomic signature.

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.16_suppl.e20525

N/A

0DataRank · unranked

0 citations

Harini Veeraraghavan, Aditya Apte, Allen Tannenbaum, Joseph O. Deasy, Jung Hun Oh

Wasserstein HOG: Local Directionality Extraction via Optimal Transport

IEEE Transactions on Medical Imaging(2023)10.1109/tmi.2023.3325295

N/A

0DataRank · unranked

0 citations

Harini Veeraraghavan, Jue Jiang, Jung Hun Oh, Larry Norton, Joseph O. Deasy +2 more

Optimal Transport for Kernel Gaussian Mixture Models

arXiv (Cornell University)(2023)10.48550/arxiv.2310.18586

N/A

0DataRank · unranked

0 citations

Rena Elkin, Anish K. Simhal, Jie-Ning Zhu, Joseph O. Deasy, Allen Tannenbaum +1 more

Nonlinear Impulsive Control Design for Biologically Grounded NSM Tumor Growth Model Using Exact Linearized Mapping

IFAC-PapersOnLine(2023)10.1016/j.ifacol.2023.10.330

N/A

0DataRank · unranked

0 citations

Soulaimane Berkane, Larry Norton, Allen Tannenbaum, Zehor Belkhatir

Mapping the Single-Cell Differentiation Landscape of Osteosarcoma

Clinical Cancer Research(2024)10.1158/1078-0432.ccr-24-0563

N/A

0DataRank · unranked

29 citations

Corey Weistuch, Kevin A. Murgas, Prasad Admane, Bridgette L. King, Jes Chauviere Lee +12 more

Unbalanced regularized optimal mass transport with applications to fluid flows in the brain

Scientific Reports(2024)10.1038/s41598-023-50874-y

N/A

0DataRank · unranked

9 citations

Helene Benveniste, Allen Tannenbaum, Xinan Chen

Divergent brain solute clearance in rat models of cerebral amyloid angiopathy and Alzheimer’s disease

iScience(2024)10.1016/j.isci.2024.111463

N/A

0DataRank · unranked

9 citations

Xinan Chen, Zachary H. Gursky, Hedok Lee, Kaiming Xu, Feng Liang +9 more

Dynamic network curvature analysis of gene expression reveals novel potential therapeutic targets in sarcoma

Scientific Reports(2024)10.1038/s41598-023-49930-4

N/A

0DataRank · unranked

4 citations

Jung Hun Oh, Filemon S. Dela Cruz, Larry Norton, Joseph O. Deasy, Andrew L. Kung +2 more

Normal tissue transcriptional signatures for tumor-type-agnostic phenotype prediction

Scientific Reports(2024)10.1038/s41598-024-76625-1

N/A

0DataRank · unranked

2 citations

Kevin A. Murgas, Jiening Zhu, Larry Norton, Ken A. Dill, Allen Tannenbaum +2 more

Optimal Mass Transport with Lagrangian Workflow Reveals Advective and Diffusion Driven Solute Transport in the Glymphatic System

Scientific Reports(2020)10.1038/s41598-020-59045-9

N/A

0DataRank · unranked

125 citations

Rena Elkin, Saad Nadeem, Yuechuan Xue, Stefan Constantinou, Simon Sanggaard +10 more

Age-dependent brain responses to mechanical stress determine resilience in a chronic lymphatic drainage impairment model

Journal of Clinical Investigation(2025)10.1172/jci182555

N/A

0DataRank · unranked

3 citations

Zohaib N. Khan, Sunil Koundal, Ankita Bhardwaj, Joaquin Caceres Melgarejo, Kaiming Xu +10 more

The glymphatic system and its role in cerebral homeostasis

Journal of Applied Physiology(2020)10.1152/japplphysiol.00852.2019

N/A

0DataRank · unranked

51 citations

Rena Elkin, Paul M. Heerdt, Sunil Koundal, Yuechuan Xue, Hedok Lee +3 more

Reproducible and Interpretable Spiculation Quantification for Lung Cancer Screening

Computer Methods and Programs in Biomedicine(2020)10.1016/j.cmpb.2020.105839

N/A

0DataRank · unranked

17 citations

Saad Nadeem, Sadegh Alam, Joseph O. Deasy, Allen Tannenbaum, Wei Lü +1 more

Functional network analysis reveals an immune tolerance mechanism in cancer

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2002179117

N/A

0DataRank · unranked

18 citations

Saad Nadeem, Maryam Pouryahya, Zehor Belkhatir, Joseph O. Deasy, Arnold J. Levine +2 more

Allen Tannenbaum

Indexed papers

Top data-sharing exemplar

Papers