🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

David Koslicki

Pennsylvania State University

ORCID: 0000-0002-0640-954X
Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 17 papers. Top paper: “KGML-xDTD: a knowledge graph–based machine learning framework for drug treatment prediction and mechanism description”.

KGML-xDTD: a knowledge graph–based machine learning framework for drug treatment prediction and mechanism description

GigaScience(2022)10.1093/gigascience/giad057
N/A
0.515DataRank · unranked
30 citations

Zhihan Zhou, Han Liu, David Koslicki, Chunyu Ma

Announcing the Biomedical Data Translator: Initial Public Release

Clinical and Translational Science(2025)10.1111/cts.70284
N/A
0.397DataRank · unranked
9 citations

Gustavo Glusman, Sergio E. Baranzini, Chris Bizon, Matthew Brush, William E. Byrd +37 more

Technology dictates algorithms: recent developments in read alignment

Genome biology(2021)10.1186/s13059-021-02443-7
N/A
0DataRank · unranked
9 citations

Jeremy Rotman, Dhrithi Deshpande, Kodi Taraszka, Huwenbo Shi, Pelin Icer Baykal +12 more

Application of MCAT questions as a testing tool and evaluation metric for knowledge graph–based reasoning systems

Clinical and Translational Science(2021)10.1111/cts.13021
N/A
0DataRank · unranked
3 citations

James P. Balhoff, Chris Bizon, William E. Byrd, Sui Hang, David Koslicki +6 more

Lightweight compositional analysis of metagenomes with FracMinHash and minimum metagenome covers

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.11.475838
N/A
0DataRank · unranked
76 citations

Phillip Brooks, Taylor Reiter, N. Tessa Pierce‐Ward, Mahmudur Rahman Hera, David Koslicki +2 more

ARAX: a graph-based modular reasoning tool for translational biomedicine

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.12.503810
N/A
0DataRank · unranked
3 citations

Chunyu Ma, Luis Mendoza, Finn Womack, E. C. Wood, Meghamala Sinha +10 more

ARAX: a graph-based modular reasoning tool for translational biomedicine

Bioinformatics(2023)10.1093/bioinformatics/btad082
N/A
0DataRank · unranked
6 citations

Chunyu Ma, Luis Mendoza, Finn Womack, E. C. Wood, Meghamala Sinha +10 more

Finding phylogeny-aware and biologically meaningful averages of metagenomic samples: L2UniFrac

Bioinformatics(2023)10.1093/bioinformatics/btad238
N/A
0DataRank · unranked
1 citations

Andrew A. Millward, David Koslicki, Wei Wei

Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash

Genome Research(2023)10.1101/gr.277651.123
N/A
0DataRank · unranked
35 citations

N. Tessa Pierce‐Ward, David Koslicki, Mahmudur Rahman Hera

YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.18.537298
N/A
0DataRank · unranked
6 citations

Stephen White, Chunyu Ma, Alexei Novikov, David Koslicki

Metagenomic functional profiling: to sketch or not to sketch?

Bioinformatics(2024)10.1093/bioinformatics/btae397
N/A
0DataRank · unranked
14 citations

Shaopeng Liu, Wei Wei, Judith Rodríguez, Chunyu Ma, David Koslicki +1 more

YACHT : an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample

Bioinformatics(2024)10.1093/bioinformatics/btae047
N/A
0DataRank · unranked
21 citations

Stephen White, Chunyu Ma, Alexei Novikov, David Koslicki

Application of MCAT questions as a testing tool and evaluation metric for knowledge graph-based reasoning systems

UNC Libraries(2024)10.17615/xw1n-xr63
N/A
0DataRank · unranked
0 citations

William E. Byrd, Karamarie Fecho, Patrick L. Schmitt, Stefano Rensi, Chris Bizon +6 more

Analysis of metagenomic data

Nature Reviews Methods Primers(2025)10.1038/s43586-024-00376-6
N/A
0DataRank · unranked
62 citations

Judith Rodríguez, Viorel Munteanu, Cynthia Ronkowski, Nitesh Kumar Sharma, Mohammed Alser +35 more

Announcing the Biomedical Data Translator: Initial Public Release

UNC Libraries(2025)10.17615/9as8-h722
N/A
0DataRank · unranked
0 citations

Gustavo Glusman, Sergio E. Baranzini, Chris Bizon, Matthew Brush, William E. Byrd +37 more

Estimating similarity and distance using FracMinHash

Algorithms for Molecular Biology(2025)10.1186/s13015-025-00276-8
N/A
0DataRank · unranked
1 citations

David Koslicki, Mahmudur Rahman Hera

Metalign: Efficient alignment-based metagenomic profiling via containment min hash

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.17.910521
N/A
0DataRank · unranked
7 citations

Mohammed Alser, Eleazar Eskin, David Koslicki, Serghei Mangul, Nathan LaPierre