Aakrosh Ratan

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.2Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Structural variation across 138,134 samples in the TOPMed consortium

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.25.525428

Top 27%

0.737DataRank

Top 27%18 citations

Adam C. English, Ginger Metcalf, Jianzhi Yang, Mark J. P. Chaisson, Nathan Pankratz +82 more

Papers

Driven by 36 papers — median percentile 43. Top paper: “Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries”.

Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries

Nature Communications(2018)10.1038/s41467-018-04668-w

N/A

3.7DataRank · unranked

109 citations

Sanni Ruotsalainen, Robert E. Handsaker, Maris Alver, Jonathan M. Bloom, Timothy Poterba +442 more

Complete Khoisan and Bantu genomes from southern Africa

Nature(2010)10.1038/nature08795

N/A

0.932DataRank · unranked

500 citations

Webb Miller, Aakrosh Ratan, Lynn P. Tomsho, Belinda Giardine, Lindsay R. Kasson +44 more

Structural variation across 138,134 samples in the TOPMed consortium

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.25.525428

Top 27%

0.737DataRank

Top 27%18 citations

Adam C. English, Ginger Metcalf, Jianzhi Yang, Mark J. P. Chaisson, Nathan Pankratz +82 more

Trans‐Specific Polymorphisms Between Cryptic Daphnia Species Affect Fitness and Behavior

Molecular Ecology(2024)10.1111/mec.17632

N/A

0.300DataRank · unranked

6 citations

Madison Karram, David J. Bass, Madison Doceti, Dörthe Becker, Joaquin C. B. Nunez +3 more

Publisher Correction: Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries

Nature Communications(2020)10.1038/s41467-020-15236-6

Top 57%

0.275DataRank

Top 57%2 citations

Sanni Ruotsalainen, Robert E. Handsaker, Maris Alver, Jonathan M. Bloom, Timothy Poterba +442 more

Clinical characteristics, management, and hematopoietic cell transplantation of patients with TLR8 gain-of-function

Blood Advances(2025)10.1182/bloodadvances.2025016338

N/A

0.212DataRank · unranked

3 citations

Saara Kaviany, Jahnavi Aluri, Katherine R. Calvo, Sarah Mehta, Joshua M. Tobin +19 more

Author Correction: Comparative and demographic analysis of orang-utan genomes

Nature(2022)10.1038/s41586-022-04799-7

Top 67%

0.174DataRank

Top 67%2 citations

LaDeana W. Hillier, Wesley C. Warren, Kim C. Worley, Lynne V. Nazareth, Donna M. Muzny +95 more

Differences in Co-Expression of T Cell Co-Inhibitory and Co-Stimulatory Molecules with PD-1 Across Different Human Cancers

Journal of Oncology Research and Therapy(2024)10.29011/2574-710x.10224

N/A

0.104DataRank · unranked

1 citations

Dale J. Hedges, Aik Choon Tan, Paulo C. Rodrı́guez, Vineeth Sukrithan, Aakrosh Ratan +10 more

Upregulation of human endogenous retrovirus-K (HML-2) mRNAs in hepatoblastoma: Identification of potential new immunotherapeutic targets and biomarkers

Journal of Pediatric Surgery(2020)10.1016/j.jpedsurg.2020.05.022

N/A

0DataRank · unranked

14 citations

Aakrosh Ratan, Laurie R. Gray, Stefan Bekiranov, David Rekosh, Marie‐Louise Hammarskjöld +2 more

Novel genetic risk factors influence progression of islet autoimmunity to type 1 diabetes

Scientific Reports(2020)10.1038/s41598-020-75690-6

N/A

0DataRank · unranked

12 citations

Umadevi Paila, Wei‐Min Chen, Aakrosh Ratan, Zhennan Zhu, Andrea K. Steck +8 more

The pan-cancer landscape of prognostic germline variants in 10,582 patients

Genome Medicine(2020)10.1186/s13073-020-0718-7

N/A

0DataRank · unranked

43 citations

Roza Przanowska, Shashi Kiran, Zhangli Su, Shekhar Saha, Briana Wilson +12 more

Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.04.412486

N/A

0DataRank · unranked

30 citations

Jean Monlong, Xian Chang, Adam M. Novak, Jordan M. Eizenga, Charles Markello +15 more

Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.17.910687

N/A

0DataRank · unranked

15 citations

Zhenjia Wang, Cuijuan Han, Stephanie L. Safgren, Kathryn A. Helmin, Emmalee R. Adelman +8 more

Human endogenous retrovirus-K mRNA expression and genomic alignment data in hepatoblastoma

Data in Brief(2020)10.1016/j.dib.2020.105895

N/A

0DataRank · unranked

6 citations

Aakrosh Ratan, Laurie R. Gray, Stefan Bekiranov, David Rekosh, Marie‐Louise Hammarskjöld +2 more

Upregulation of Human Endogenous Retrovirus-K (HML-2) mRNAs in hepatoblastoma: Identification of potential new immunotherapeutic targets and biomarkers

medRxiv(2020)10.1101/2020.02.28.20026260

N/A

0DataRank · unranked

1 citations

Aakrosh Ratan, Laurie R. Gray, Stefan Bekiranov, David Rekosh, Marie‐Louise Hammarskjöld +2 more

SVXplorer: Three-tier approach to identification of structural variants via sequential recombination of discordant cluster signatures

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007737

N/A

0DataRank · unranked

0 citations

Aakrosh Ratan, Kunal Kathuria

Data Integration with SUMO Detects Latent Relationships Between Patients in Lower-Grade Gliomas

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.10.244343

N/A

0DataRank · unranked

0 citations

Jinyu Chen, Ajay Chatrath, John T. Lawson, Nathan C. Sheffield, Louxin Zhang +2 more

Pangenomics enables genotyping of known structural variants in 5202 diverse genomes

Science(2021)10.1126/science.abg8871

N/A

0DataRank · unranked

419 citations

Jean Monlong, Xian Chang, Adam M. Novak, Jordan M. Eizenga, Charles Markello +15 more

Germline variants predictive of tumor mutational burden and immune checkpoint inhibitor efficacy

iScience(2021)10.1016/j.isci.2021.102248

N/A

0DataRank · unranked

13 citations

Aakrosh Ratan, Anindya Dutta, Ajay Chatrath

Whole genome sequencing identifies common and rare structural variants contributing to hematologic traits in the NHLBI TOPMed program

medRxiv(2021)10.1101/2021.12.16.21267871

N/A

0DataRank · unranked

6 citations

Adrienne M. Stilp, Shuquan Rao, Bjarni V. Halldórsson, Doruk Beyter, Jia Wen +54 more

Polygenic variation in sexual investment across an ephemerality gradient in Daphnia pulex

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.23.449662

N/A

0DataRank · unranked

1 citations

Dörthe Becker, Connor S. Murray, Robert Porter, Grace Gutierrez, Priscilla A. Erickson +7 more

Genomic landscape of TCRαβ and TCRγδ T-large granular lymphocyte leukemia

Blood(2022)10.1182/blood.2021013164

N/A

0DataRank · unranked

65 citations

Jeffrey C. Xing, Katharine B. Moosic, Johnson Ung, Vivian Chan, David Chung +11 more

Detecting molecular subtypes from multi-omics datasets using SUMO

Cell Reports Methods(2022)10.1016/j.crmeth.2021.100152

N/A

0DataRank · unranked

24 citations

Jinyu Chen, Ajay Chatrath, John T. Lawson, Nathan C. Sheffield, Louxin Zhang +2 more

Whole genome sequencing identifies structural variants contributing to hematologic traits in the NHLBI TOPMed program

Nature Communications(2022)10.1038/s41467-022-35354-7

N/A

0DataRank · unranked

18 citations

Adrienne M. Stilp, Shuquan Rao, Bjarni V. Halldórsson, Doruk Beyter, Jia Wen +54 more

Genetic Variation in Reproductive Investment Across an Ephemerality Gradient inDaphnia pulex

Molecular Biology and Evolution(2022)10.1093/molbev/msac121

N/A

0DataRank · unranked

14 citations

Dörthe Becker, Connor S. Murray, Robert Porter, Grace Gutierrez, Priscilla A. Erickson +7 more

Protocol for integrative subtyping of lower-grade gliomas using the SUMO pipeline

STAR Protocols(2022)10.1016/j.xpro.2021.101110

N/A

0DataRank · unranked

5 citations

Aakrosh Ratan, Karolina Sienkiewicz

Integrated bioinformatic pipeline using whole-exome and RNAseq data to identify germline variants correlated with cancer

STAR Protocols(2022)10.1016/j.xpro.2022.101273

N/A

0DataRank · unranked

1 citations

Ajay Chatrath, Aakrosh Ratan, Anindya Dutta, Divya Sahu

Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation

Genome biology(2020)10.1186/s13059-020-02152-7

N/A

0DataRank · unranked

128 citations

Zhenjia Wang, Cuijuan Han, Stephanie L. Safgren, Kathryn A. Helmin, Emmalee R. Adelman +10 more

Structural variation across 138,134 samples in the TOPMed consortium

Research Square(2023)10.21203/rs.3.rs-2515453/v1

N/A

0DataRank · unranked

9 citations

Adam C. English, Ginger Metcalf, Jianzhi Yang, Mark J. P. Chaisson, Nathan Pankratz +82 more

Activating STAT3 mutations in CD8+ T-cells correlate to serological positivity in rheumatoid arthritis

Frontiers in Immunology(2024)10.3389/fimmu.2024.1466276

N/A

0DataRank · unranked

3 citations

Thomas L. Olson, Mark Freijat, Samara Khalique, Cait E. Hamele, Bryna C. Shemo +14 more

Compound heterozygous DAW1 variants reveal tissue-specific roles in left-right patterning and congenital heart disease without primary ciliary dyskinesia

(2026)10.64898/2026.01.27.26344789

N/A

0DataRank · unranked

0 citations

Anburaj Jeyaraj, Shruti Bedekar, Venkatramanan G. Rao, Shelby C White, Matthew J Thomas +8 more

Balancing selection and the functional effects of shared polymorphism in cryptic Daphnia species

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.16.589693

N/A

0DataRank · unranked

0 citations

Madison Karram, David J. Bass, Madison Doceti, Dörthe Becker, Joaquin C. B. Nunez +3 more

Multicellular immune ecotypes within solid tumors predict real-world therapeutic benefits with immune checkpoint inhibitors

Nature Communications(2025)10.1038/s41467-025-65016-3

N/A

0DataRank · unranked

5 citations

Tingyi Li, Islam Eljilany, Alex C. Soupir, Michael D. Radmacher, Phaedra Agius +17 more

Germline Variants That Affect Tumor Progression

Trends in Genetics(2020)10.1016/j.tig.2020.10.005

N/A

0DataRank · unranked

61 citations

Aakrosh Ratan, Anindya Dutta, Ajay Chatrath

cellSTAAR: incorporating single-cell-sequencing-based functional data to boost power in rare variant association testing of noncoding regions

Nature Methods(2025)10.1038/s41592-025-02919-5

N/A

0DataRank · unranked

0 citations

Yi Zhang, Xihao Li, Margaret Sunitha Selvaraj, Zilin Li, Hufeng Zhou +544 more

Implementation of a Hamming distance–like genomic quantum classifier using inner products on ibmqx2 and ibmq_16_melbourne

Quantum Machine Intelligence(2020)10.1007/s42484-020-00017-7

N/A

0DataRank · unranked

26 citations

Aakrosh Ratan, Michael J. McConnell, Stefan Bekiranov, Kunal Kathuria

Aakrosh Ratan

Indexed papers

Top data-sharing exemplar

Papers