🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Alan Perez-Rathke

Vanderbilt University Medical Center

ORCID: 0000-0002-0792-2484
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 7 papers. Top paper: “CHROMATIX: computing the functional landscape of many-body chromatin interactions in transcriptionally active loci from deconvolved single cells”.

CHROMATIX: computing the functional landscape of many-body chromatin interactions in transcriptionally active loci from deconvolved single cells

Genome biology(2020)10.1186/s13059-019-1904-z
N/A
0DataRank · unranked
44 citations

Qiu Sun, Boshen Wang, Valentina Boeva, Zhifeng Shao, Jie Liang +1 more

High-resolution single-cell 3D-models of chromatin ensembles during Drosophila embryogenesis

Nature Communications(2021)10.1038/s41467-020-20490-9
N/A
0DataRank · unranked
34 citations

Alan Perez-Rathke, Daniel M. Czajkowsky, Zhifeng Shao, Jie Liang, Qiu Sun

Minimalistic 3D chromatin models: Sparse interactions in single cells drive the chromatin fold and form many-body units

Current Opinion in Structural Biology(2021)10.1016/j.sbi.2021.06.017
N/A
0DataRank · unranked
20 citations

Alan Perez-Rathke, Jie Liang

Minimalistic 3D Chromatin Models: Sparse Interactions in Single Cells Drive the Chromatin Fold and Form Many-Body Units

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.06.455444
N/A
0DataRank · unranked
1 citations

Alan Perez-Rathke, Jie Liang

SeqMapPDB: A Standalone Pipeline to Identify Representative Structures of Protein Sequences and Mapping Residue Indices in Real-Time at Proteome Scale

arXiv (Cornell University)(2022)10.48550/arxiv.2202.11551
N/A
0DataRank · unranked
1 citations

Lei Xue, Wei Tian, Alan Perez-Rathke, Yan Yuan Tseng, Jie Liang +1 more

SPRI: Structure-Based Pathogenicity Relationship Identifier for Predicting Effects of Single Missense Variants and Discovery of Higher-Order Cancer Susceptibility Clusters of Mutations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.27.508720
N/A
0DataRank · unranked
1 citations

Xue Lei, Wei Tian, Alan Perez-Rathke, Yan Yuan Tseng, Jie Liang +1 more

Structure-based pathogenicity relationship identifier for predicting effects of single missense variants and discovery of higher-order cancer susceptibility clusters of mutations

Briefings in Bioinformatics(2023)10.1093/bib/bbad206
N/A
0DataRank · unranked
13 citations

Xue Lei, Wei Tian, Alan Perez-Rathke, Yan Yuan Tseng, Jie Liang +1 more